Florian Breitwieser
Affiliations: | 2015-2019 | Institute of Genetic Medicine | Johns Hopkins University, Baltimore, MD |
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| Lu J, Rincon N, Wood DE, et al. (2022) Metagenome analysis using the Kraken software suite. Nature Protocols |
| Breitwieser FP, Salzberg SL. (2019) Pavian: Interactive analysis of metagenomics data for microbiome studies and pathogen identification. Bioinformatics (Oxford, England) |
| Bewick S, Gurarie E, Weissman JL, et al. (2019) Trait-based analysis of the human skin microbiome. Microbiome. 7: 101 |
| Breitwieser FP, Pertea M, Zimin A, et al. (2019) Human contamination in bacterial genomes has created thousands of spurious proteins. Genome Research |
| Pertea M, Shumate A, Pertea G, et al. (2018) CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise. Genome Biology. 19: 208 |
| Li Z, Breitwieser FP, Lu J, et al. (2018) Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing. Investigative Ophthalmology & Visual Science. 59: 280-288 |
| Breitwieser FP, Lu J, Salzberg SL. (2017) A review of methods and databases for metagenomic classification and assembly. Briefings in Bioinformatics |
| Kandathil AJ, Breitwieser FP, Sachithanandham J, et al. (2017) Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs. Annals of Internal Medicine |
| Lu J, Breitwieser FP, Thielen P, et al. (2017) Bracken: estimating species abundance in metagenomics data Peerj Computer Science. 3: e104 |
| Kim D, Song L, Breitwieser FP, et al. (2016) Centrifuge: rapid and sensitive classification of metagenomic sequences. Genome Research |