Martin Steinegger
Affiliations: | 2018- | Biomedical Engineering | Johns Hopkins University, Baltimore, MD |
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Publications
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| Hamamsy T, Barot M, Morton JT, et al. (2023) Learning sequence, structure, and function representations of proteins with language models. Biorxiv : the Preprint Server For Biology |
| Basu S, Zhao B, Biró B, et al. (2023) DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options. Nucleic Acids Research |
| Varabyou A, Sommer MJ, Erdogdu B, et al. (2023) CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure. Genome Biology. 24: 249 |
| Liu D, Steinegger M. (2023) Block Aligner: an adaptive SIMD-accelerated aligner for sequences and position-specific scoring matrices. Bioinformatics (Oxford, England). 39 |
| Ruperti F, Papadopoulos N, Musser JM, et al. (2023) Cross-phyla protein annotation by structural prediction and alignment. Genome Biology. 24: 113 |
| van Kempen M, Kim SS, Tumescheit C, et al. (2023) Fast and accurate protein structure search with Foldseek. Nature Biotechnology |
| Sommer MJ, Cha S, Varabyou A, et al. (2022) Structure-guided isoform identification for the human transcriptome. Elife. 11 |
| Schütze K, Heinzinger M, Steinegger M, et al. (2022) Nearest neighbor search on embeddings rapidly identifies distant protein relations. Frontiers in Bioinformatics. 2: 1033775 |
| Olenyi T, Marquet C, Heinzinger M, et al. (2022) LambdaPP: Fast and accessible protein-specific phenotype predictions. Protein Science : a Publication of the Protein Society. e4524 |
| Varadi M, Nair S, Sillitoe I, et al. (2022) 3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources. Gigascience. 11 |