Aysima Hacisuleyman
Affiliations: | 2020- | Swiss Federal Institute of Technology (EPFL) |
Area:
Computational Biology, BiophysicsGoogle:
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Publications
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Hacisuleyman A, Erman B. (2023) Synergy and anti-cooperativity in allostery: Molecular dynamics study of WT and oncogenic KRAS-RGL1. Proteins |
Hacisuleyman A, Erman B. (2023) Fine tuning rigid body docking results using the Dreiding force field: A computational study of 36 known nanobody-protein complexes. Proteins |
Haliloglu T, Hacisuleyman A, Erman B. (2022) Prediction of Allosteric Communication Pathways in Proteins. Bioinformatics (Oxford, England) |
Hacisuleyman A, Erman B. (2022) Information flow and allosteric communication in proteins. The Journal of Chemical Physics. 156: 185101 |
Golcuk M, Hacisuleyman A, Yilmaz SZ, et al. (2022) SARS-CoV-2 Delta Variant Decreases Nanobody Binding and ACE2 Blocking Effectivity. Journal of Chemical Information and Modeling |
Golcuk M, Hacisuleyman A, Erman B, et al. (2021) Binding Mechanism of Neutralizing Nanobodies Targeting SARS-CoV-2 Spike Glycoprotein. Journal of Chemical Information and Modeling. 61: 5152-5160 |
Hacisuleyman A, Erkip A, Erman B, et al. (2021) Synchronous and Asynchronous Response in Dynamically Perturbed Proteins. The Journal of Physical Chemistry. B. 125: 729-739 |
Hacisuleyman A, Erman B. (2020) ModiBodies: A computational method for modifying nanobodies in nanobody-antigen complexes to improve binding affinity and specificity. Journal of Biological Physics |
Hacisuleyman A, Erman B. (2017) Causality, transfer entropy, and allosteric communication landscapes in proteins with harmonic interactions. Proteins. 85: 1056-1064 |
Hacisuleyman A, Erman B. (2017) Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin. Plos Computational Biology. 13: e1005319 |