Aysima Hacisuleyman

2020- Swiss Federal Institute of Technology (EPFL) 
Computational Biology, Biophysics
"Aysima Hacisuleyman"
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Burak Erman grad student 2015-2019 Koc University (Chemistry Tree)
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Hacisuleyman A, Erman B. (2023) Synergy and anti-cooperativity in allostery: Molecular dynamics study of WT and oncogenic KRAS-RGL1. Proteins
Hacisuleyman A, Erman B. (2023) Fine tuning rigid body docking results using the Dreiding force field: A computational study of 36 known nanobody-protein complexes. Proteins
Haliloglu T, Hacisuleyman A, Erman B. (2022) Prediction of Allosteric Communication Pathways in Proteins. Bioinformatics (Oxford, England)
Hacisuleyman A, Erman B. (2022) Information flow and allosteric communication in proteins. The Journal of Chemical Physics. 156: 185101
Golcuk M, Hacisuleyman A, Yilmaz SZ, et al. (2022) SARS-CoV-2 Delta Variant Decreases Nanobody Binding and ACE2 Blocking Effectivity. Journal of Chemical Information and Modeling
Golcuk M, Hacisuleyman A, Erman B, et al. (2021) Binding Mechanism of Neutralizing Nanobodies Targeting SARS-CoV-2 Spike Glycoprotein. Journal of Chemical Information and Modeling. 61: 5152-5160
Hacisuleyman A, Erkip A, Erman B, et al. (2021) Synchronous and Asynchronous Response in Dynamically Perturbed Proteins. The Journal of Physical Chemistry. B. 125: 729-739
Hacisuleyman A, Erman B. (2020) ModiBodies: A computational method for modifying nanobodies in nanobody-antigen complexes to improve binding affinity and specificity. Journal of Biological Physics
Hacisuleyman A, Erman B. (2017) Causality, transfer entropy, and allosteric communication landscapes in proteins with harmonic interactions. Proteins. 85: 1056-1064
Hacisuleyman A, Erman B. (2017) Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin. Plos Computational Biology. 13: e1005319
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