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Joseph R. Ecker, Ph.D.

Affiliations: 
HHMI-The Salk Institute for Biological Studies 
Area:
epigenetics, molecular genetics
Website:
http://www.salk.edu/faculty/ecker.html
Google:
"Joseph Ecker"
Bio:

http://www.hhmi.org/research/hhmi-gbmf/ecker_bio.html

Parents

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Richard W. Hyman grad student 1978-1982 Penn State College of Medicine (Chemistry Tree)
Ronald W. Davis post-doc 1983-1986 Stanford Medical School (Evolution Tree)

Children

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Ammar Naqvi research assistant 2006-2008 (Chemistry Tree)
Peter Berube grad student UCSD Bioinformatics
Katherine N. Chang grad student Alliances and Partnerships Manager, Illumina
Hanqing Liu grad student UCSD Bioinformatics
Ramlah B. Nehring grad student Vice President of Corporate Development at Foundation Medicine
Jeffrey Nelson grad student UW Madison
Qian Peng grad student Assistant Professor of MCN, Scripps Resarch (Neurotree)
Gregg Roman grad student Associate Professor, University of Houston (Neurotree)
Matt Schultz grad student Team Lead, INVITAE
Anna Stepanova grad student NCSU
Ambika Sundaresan grad student Sr. Bioinformatics Scientist, Illumina
Pengcheng Tan grad student UCLA Bioinformatics Program
Shelly Trigg grad student Research Scientist, Gloucester Marine Genomics Institute
Sung Yeon grad student Yale
Jingtian Zhou grad student UCSD Bioinformatics
post-doc Sr. Associate Vice Provost for Technology Management, Drexel Applied Innovation
José Alonso post-doc Williams Neal Reynolds Distinguished Professor of Plant Biology and Genetics, North Carolina State University
Justin Borevitz post-doc Professor, Australian National University
Qimin Chao post-doc Director, Morphotek, Inc.
Ken Dewar post-doc Associate Professor, Department of Human Genetics, McGill University
Robert H. Dowen post-doc Assistant Professor, Biology Department, University of North Carolina (Chemistry Tree)
Patrick Dunn post-doc Staff Scientist, Celera Genomics
Mary Galli post-doc Research Assistant, Waksman Institute, Rutgers University
Renee M. Garza post-doc HHMI-The Salk Institute for Biological Studies (Chemistry Tree)
Brian Gregory post-doc Associate Professor, Department of Biology, University of Pennsylvania
Hongwei Guo post-doc Assistant Professor, Peking University, CHINA (Cell Biology Tree)
Yupeng He post-doc Manager, Bioinformatics, Guardant Health
Robert Henley post-doc 10X Genomics
Takashi Hirayama post-doc IPSR, Okayama University
Elizabeth Howell post-doc
Shao-Shan Carol Huang post-doc Assistant Professor, New York University
Natanella Illouz-Eliaz post-doc HHMI-The Salk Institute for Biological Studies
Sumie Ishiguro post-doc Assistant Professor, Nagoya University
Florian Jupe post-doc Bayer Crop Science
Taji Kawakatsu post-doc Principal Researcher, National Institute of Agrobiological Sciences, Japan
Joseph John Kieber post-doc UNC Chapel Hill
Yukio Kurihara post-doc RIKEN
Travis Lee post-doc Salk Institute (Chemistry Tree)
Mathew G. Lewsey post-doc Associate Professor, La Trobe University, Australia
Hai Li post-doc Associate Research Scientist, Columbia University
Sarah J. Liljegren post-doc Associate Professor, Department of Biology, University of Mississippi
Jun Lim post-doc Assistant Professor, Department of Bioscience and Biotechnology, Konkuk University, South Korea
Ryan Lister post-doc Winthrop Professor, The University of Western Australia
Chongyuan Luo post-doc Assistant Professor, Department of Human Genetics, UCLA
Tatsuya Nobori post-doc HHMI-The Salk Institute for Biological Studies
Ronan O'Malley post-doc Director of Sequencing Operations, JGI
Hong Qiao post-doc UT Austin
Robert J. Schmitz post-doc Associate Professor, University of Georgia
Hiroshi Shiba post-doc Assistant Professor, Nara University
Tatjana Singer post-doc Manager of Collaborations, Omniome, Inc.
Liang Song post-doc Assistant Professor, University of British Columbia
Joseph Swift post-doc HHMI-The Salk Institute for Biological Studies
Wei Tian post-doc HHMI-The Salk Institute for Biological Studies
Wenliang Wang post-doc HHMI-The Salk Institute for Biological Studies
Bang-An Wang post-doc HHMI-The Salk Institute for Biological Studies
Kevin Wang post-doc Assistant Professor, Academia Sinica, Taiwan
Mingtian Xie post-doc CIBUS
Junshi Yazaki post-doc Staff Scientist, RIKEN
Hitoshi Yoshida post-doc NARO, Japan
Mark Zander post-doc Assistant Professor, Waksman Institute, Rutgers University
Zhuzhu Zhang post-doc HHMI-The Salk Institute for Biological Studies
Roberto Solano post-doc 1996-1999

Collaborators

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Antonio Pinto-Duarte collaborator (Neurotree)
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Publications

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Zemke NR, Armand EJ, Wang W, et al. (2024) Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex. Nature
Cao M, Platre MP, Tsai HH, et al. (2024) Spatial IMA1 regulation restricts root iron acquisition on MAMP perception. Nature
Mukamel EA, Liu H, Behrens MM, et al. (2023) Cell type-specific enrichment of somatic aneuploidy in the mammalian brain. Biorxiv : the Preprint Server For Biology
Zhou J, Zhang Z, Wu M, et al. (2023) Brain-wide correspondence of neuronal epigenomics and distant projections. Nature. 624: 355-365
Zemke NR, Armand EJ, Wang W, et al. (2023) Conserved and divergent gene regulatory programs of the mammalian neocortex. Nature. 624: 390-402
Zu S, Li YE, Wang K, et al. (2023) Single-cell analysis of chromatin accessibility in the adult mouse brain. Nature. 624: 378-389
Liu H, Zeng Q, Zhou J, et al. (2023) Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain. Nature. 624: 366-377
Raikhel N, Ecker JR, Coruzzi G. (2023) Remembering Philip N. Benfey: A visionary pioneer in plant biology and mentor extraordinaire. Proceedings of the National Academy of Sciences of the United States of America. 120: e2317677120
Tian W, Zhou J, Bartlett A, et al. (2023) Single-cell DNA methylation and 3D genome architecture in the human brain. Science (New York, N.Y.). 382: eadf5357
Li YE, Preissl S, Miller M, et al. (2023) A comparative atlas of single-cell chromatin accessibility in the human brain. Science (New York, N.Y.). 382: eadf7044
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