John Quackenbush
Affiliations: | Biostatistics | Harvard Chan School of Public Health |
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"John Quackenbush"Children
Sign in to add trainee| Tian Wang | research assistant | 2018- | Harvard (Neurotree) |
| Marieke Lydia Kuijjer | post-doc | 2013-2018 | Harvard Chan School of Public Health |
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Publications
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| Saha E, Fanfani V, Mandros P, et al. (2023) Bayesian Optimized sample-specific Networks Obtained By Omics data (BONOBO). Biorxiv : the Preprint Server For Biology |
| Ben Guebila M, Wang T, Lopes-Ramos CM, et al. (2023) The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks. Genome Biology. 24: 45 |
| Gaynor SM, Fagny M, Lin X, et al. (2022) Connectivity in eQTL networks dictates reproducibility and genomic properties. Cell Reports Methods. 2: 100218 |
| Ben Guebila M, Weighill D, Lopes-Ramos CM, et al. (2022) An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks. Nature Methods |
| Guebila MB, Morgan DC, Glass K, et al. (2022) gpuZoo: Cost-effective estimation of gene regulatory networks using the Graphics Processing Unit. Nar Genomics and Bioinformatics. 4: lqac002 |
| Sonawane AR, DeMeo DL, Quackenbush J, et al. (2021) Constructing gene regulatory networks using epigenetic data. Npj Systems Biology and Applications. 7: 45 |
| Ben Guebila M, Lopes-Ramos CM, Weighill D, et al. (2021) GRAND: a database of gene regulatory network models across human conditions. Nucleic Acids Research |
| Lopes-Ramos CM, Belova T, Brunner TH, et al. (2021) Regulatory network of PD1 signaling is associated with prognosis in glioblastoma multiforme. Cancer Research |
| Weighill D, Ben Guebila M, Glass K, et al. (2021) Gene Targeting in Disease Networks. Frontiers in Genetics. 12: 649942 |
| Qiang J, Ding W, Kuijjer M, et al. (2020) Clustering Sparse Data With Feature Correlation With Application to Discover Subtypes in Cancer. Ieee Access : Practical Innovations, Open Solutions. 8: 67775-67789 |