Sriram Sankararaman - Publications

2010 Computer Science University of California, Berkeley, Berkeley, CA 

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Rakocz N, Chiang JN, Nittala MG, Corradetti G, Tiosano L, Velaga S, Thompson M, Hill BL, Sankararaman S, Haines JL, Pericak-Vance MA, Stambolian D, Sadda SR, Halperin E. Automated identification of clinical features from sparsely annotated 3-dimensional medical imaging. Npj Digital Medicine. 4: 44. PMID 33686212 DOI: 10.1038/s41746-021-00411-w  0.4
2020 Agrawal A, Chiu AM, Le M, Halperin E, Sankararaman S. Scalable probabilistic PCA for large-scale genetic variation data. Plos Genetics. 16: e1008773. PMID 32469896 DOI: 10.1371/Journal.Pgen.1008773  0.4
2020 Durvasula A, Sankararaman S. Recovering signals of ghost archaic introgression in African populations. Science Advances. 6: eaax5097. PMID 32095519 DOI: 10.1126/Sciadv.Aax5097  1
2019 Hill BL, Brown R, Gabel E, Rakocz N, Lee C, Cannesson M, Baldi P, Olde Loohuis L, Johnson R, Jew B, Maoz U, Mahajan A, Sankararaman S, Hofer I, Halperin E. An automated machine learning-based model predicts postoperative mortality using readily-extractable preoperative electronic health record data. British Journal of Anaesthesia. PMID 31627890 DOI: 10.1016/J.Bja.2019.07.030  0.4
2019 Rahmani E, Schweiger R, Rhead B, Criswell LA, Barcellos LF, Eskin E, Rosset S, Sankararaman S, Halperin E. Cell-type-specific resolution epigenetics without the need for cell sorting or single-cell biology. Nature Communications. 10: 3417. PMID 31366909 DOI: 10.1038/S41467-019-11052-9  0.4
2019 Durvasula A, Sankararaman S. A statistical model for reference-free inference of archaic local ancestry. Plos Genetics. 15: e1008175. PMID 31136573 DOI: 10.1371/Journal.Pgen.1008175  1
2018 Schumer M, Xu C, Powell DL, Durvasula A, Skov L, Holland C, Blazier JC, Sankararaman S, Andolfatto P, Rosenthal GG, Przeworski M. Natural selection interacts with recombination to shape the evolution of hybrid genomes. Science (New York, N.Y.). PMID 29674434 DOI: 10.1126/Science.Aar3684  1
2016 Sankararaman S, Mallick S, Patterson N, Reich D. The Combined Landscape of Denisovan and Neanderthal Ancestry in Present-Day Humans. Current Biology : Cb. PMID 27032491 DOI: 10.1016/J.Cub.2016.03.037  0.72
2015 Palamara PF, Francioli LC, Wilton PR, Genovese G, Gusev A, Finucane HK, Sankararaman S, Sunyaev SR, de Bakker PI, Wakeley J, Pe'er I, Price AL. Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates. American Journal of Human Genetics. PMID 26581902 DOI: 10.1016/J.Ajhg.2015.10.006  0.72
2015 Lipson M, Loh PR, Sankararaman S, Patterson N, Berger B, Reich D. Calibrating the Human Mutation Rate via Ancestral Recombination Density in Diploid Genomes. Plos Genetics. 11: e1005550. PMID 26562831 DOI: 10.1371/Journal.Pgen.1005550  0.72
2015 Zou JY, Park DS, Burchard EG, Torgerson DG, Pino-Yanes M, Song YS, Sankararaman S, Halperin E, Zaitlen N. Genetic and socioeconomic study of mate choice in Latinos reveals novel assortment patterns. Proceedings of the National Academy of Sciences of the United States of America. 112: 13621-6. PMID 26483472 DOI: 10.1073/Pnas.1501741112  0.76
2015 Zou JY, Halperin E, Burchard E, Sankararaman S. Inferring parental genomic ancestries using pooled semi-Markov processes. Bioinformatics (Oxford, England). 31: i190-i196. PMID 26072482 DOI: 10.1093/Bioinformatics/Btv239  0.72
2014 Zaitlen N, Pasaniuc B, Sankararaman S, Bhatia G, Zhang J, Gusev A, Young T, Tandon A, Pollack S, Vilhjálmsson BJ, Assimes TL, Berndt SI, Blot WJ, Chanock S, Franceschini N, et al. Leveraging population admixture to characterize the heritability of complex traits. Nature Genetics. 46: 1356-62. PMID 25383972 DOI: 10.1038/Ng.3139  0.72
2014 Sankararaman S, Mallick S, Dannemann M, Prüfer K, Kelso J, Pääbo S, Patterson N, Reich D. The genomic landscape of Neanderthal ancestry in present-day humans. Nature. 507: 354-7. PMID 24476815 DOI: 10.1038/Nature12961  0.72
2014 Williams AL, Jacobs SB, Moreno-Macías H, Huerta-Chagoya A, Churchhouse C, Márquez-Luna C, García-Ortíz H, Gómez-Vázquez MJ, Burtt NP, Aguilar-Salinas CA, González-Villalpando C, Florez JC, Orozco L, Haiman CA, et al. Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico. Nature. 506: 97-101. PMID 24390345 DOI: 10.1038/Nature12828  0.72
2014 Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, et al. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature. 505: 43-9. PMID 24352235 DOI: 10.1038/Nature12886  0.72
2014 Sankararaman S, Teubert C, Goebel K. Uncertainty in steady-state diagnostics of a current-pressure transducer: How confident are we in diagnosing faults? Phm 2014 - Proceedings of the Annual Conference of the Prognostics and Health Management Society 2014. 356-366.  0.01
2013 Bhatia G, Patterson N, Sankararaman S, Price AL. Estimating and interpreting FST: The impact of rare variants Genome Research. 23: 1514-1521. PMID 23861382 DOI: 10.1101/Gr.154831.113  0.72
2013 Pasaniuc B, Sankararaman S, Torgerson DG, Gignoux C, Zaitlen N, Eng C, Rodriguez-Cintron W, Chapela R, Ford JG, Avila PC, Rodriguez-Santana J, Chen GK, Le Marchand L, Henderson B, Reich D, et al. Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinformatics (Oxford, England). 29: 1407-15. PMID 23572411 DOI: 10.1093/Bioinformatics/Btt166  0.72
2012 Sankararaman S, Patterson N, Li H, Pääbo S, Reich D. The date of interbreeding between Neandertals and modern humans. Plos Genetics. 8: e1002947. PMID 23055938 DOI: 10.1371/Journal.Pgen.1002947  0.72
2012 Turchin MC, Chiang CW, Palmer CD, Sankararaman S, Reich D, Hirschhorn JN. Evidence of widespread selection on standing variation in Europe at height-associated SNPs. Nature Genetics. 44: 1015-9. PMID 22902787 DOI: 10.1038/Ng.2368  0.72
2012 Baran Y, Pasaniuc B, Sankararaman S, Torgerson DG, Gignoux C, Eng C, Rodriguez-Cintron W, Chapela R, Ford JG, Avila PC, Rodriguez-Santana J, Burchard EG, Halperin E. Fast and accurate inference of local ancestry in Latino populations. Bioinformatics (Oxford, England). 28: 1359-67. PMID 22495753 DOI: 10.1093/Bioinformatics/Bts144  0.72
2012 Bouchard-Côté A, Sankararaman S, Jordan MI. Phylogenetic inference via sequential Monte Carlo. Systematic Biology. 61: 579-93. PMID 22223445 DOI: 10.1093/Sysbio/Syr131  0.72
2012 Sankararaman S, Chen J, Subramanian L, Ramasubramanian V. TrickleDNS: Bootstrapping DNS security using social trust 2012 4th International Conference On Communication Systems and Networks, Comsnets 2012. DOI: 10.1109/COMSNETS.2012.6151334  0.72
2010 Hodgkinson CA, Enoch MA, Srivastava V, Cummins-Oman JS, Ferrier C, Iarikova P, Sankararaman S, Yamini G, Yuan Q, Zhou Z, Albaugh B, White KV, Shen PH, Goldman D. Genome-wide association identifies candidate genes that influence the human electroencephalogram. Proceedings of the National Academy of Sciences of the United States of America. 107: 8695-700. PMID 20421487 DOI: 10.1073/Pnas.0908134107  0.72
2010 Sankararaman S, Sha F, Kirsch JF, Jordan MI, Sjölander K. Active site prediction using evolutionary and structural information. Bioinformatics (Oxford, England). 26: 617-24. PMID 20080507 DOI: 10.1093/Bioinformatics/Btq008  0.72
2009 Sankararaman S, Obozinski G, Jordan MI, Halperin E. Genomic privacy and limits of individual detection in a pool. Nature Genetics. 41: 965-7. PMID 19701190 DOI: 10.1038/Ng.436  0.72
2009 Alterovitz R, Arvey A, Sankararaman S, Dallett C, Freund Y, Sjölander K. ResBoost: characterizing and predicting catalytic residues in enzymes. Bmc Bioinformatics. 10: 197. PMID 19558703 DOI: 10.1186/1471-2105-10-197  0.72
2009 Pasaniuc B, Sankararaman S, Kimmel G, Halperin E. Inference of locus-specific ancestry in closely related populations. Bioinformatics (Oxford, England). 25: i213-21. PMID 19477991 DOI: 10.1093/Bioinformatics/Btp197  0.72
2009 Sankararaman S, Kolaczkowski B, Sjölander K. INTREPID: a web server for prediction of functionally important residues by evolutionary analysis. Nucleic Acids Research. 37: W390-5. PMID 19443452 DOI: 10.1093/Nar/Gkp339  0.72
2008 Sankararaman S, Sjölander K. INTREPID--INformation-theoretic TREe traversal for Protein functional site IDentification. Bioinformatics (Oxford, England). 24: 2445-52. PMID 18776193 DOI: 10.1093/Bioinformatics/Btn474  0.72
2008 Skibola CF, Bracci PM, Halperin E, Nieters A, Hubbard A, Paynter RA, Skibola DR, Agana L, Becker N, Tressler P, Forrest MS, Sankararaman S, Conde L, Holly EA, Smith MT. Polymorphisms in the estrogen receptor 1 and vitamin C and matrix metalloproteinase gene families are associated with susceptibility to lymphoma. Plos One. 3: e2816. PMID 18636124 DOI: 10.1371/Journal.Pone.0002816  0.72
2008 Sankararaman S, Kimmel G, Halperin E, Jordan MI. On the inference of ancestries in admixed populations. Genome Research. 18: 668-75. PMID 18353809 DOI: 10.1101/Gr.072751.107  0.72
2008 Sankararaman S, Sridhar S, Kimmel G, Halperin E. Estimating local ancestry in admixed populations. American Journal of Human Genetics. 82: 290-303. PMID 18252211 DOI: 10.1016/J.Ajhg.2007.09.022  0.72
2004 Mukherjea S, Subramaniam LV, Chanda G, Sankararaman S, Kothari R, Batra V, Bhardwaj D, Srivastava B. Enhancing a biomedical information extraction system with dictionary mining and context disambiguation Ibm Journal of Research and Development. 48: 693-701. DOI: 10.1147/Rd.485.0693  0.72
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