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Barbara Elizabeth Engelhardt - Publications

Biostatistics & Bioinformatics Duke University, Durham, NC 
 Computer Science Princeton University, Princeton, NJ 
Machine learning, Bayesian statistics, statistical genetics, computational biology, quantitative genetics.

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Oliva M, Muñoz-Aguirre M, Kim-Hellmuth S, Wucher V, Gewirtz ADH, Cotter DJ, Parsana P, Kasela S, Balliu B, Viñuela A, Castel SE, Mohammadi P, Aguet F, Zou Y, Khramtsova EA, ... ... Engelhardt BE, et al. The impact of sex on gene expression across human tissues. Science (New York, N.Y.). 369. PMID 32913072 DOI: 10.1126/Science.Aba3066  0.92
2016 Gao C, McDowell IC, Zhao S, Brown CD, Engelhardt BE. Context Specific and Differential Gene Co-expression Networks via Bayesian Biclustering. Plos Computational Biology. 12: e1004791. PMID 27467526 DOI: 10.1371/Journal.Pcbi.1004791  0.6
2015 Engelhardt BE, Brown CD. Diving deeper to predict noncoding sequence function. Nature Methods. 12: 925-6. PMID 26418766 DOI: 10.1038/Nmeth.3604  0.6
2015 Mimno D, Blei DM, Engelhardt BE. Posterior predictive checks to quantify lack-of-fit in admixture models of latent population structure. Proceedings of the National Academy of Sciences of the United States of America. 112: E3441-50. PMID 26071445 DOI: 10.1073/Pnas.1412301112  0.6
2015 de Moor MH, van den Berg SM, Verweij KJ, Krueger RF, Luciano M, Arias Vasquez A, Matteson LK, Derringer J, Esko T, Amin N, Gordon SD, Hansell NK, Hart AB, Seppälä I, ... ... Engelhardt BE, et al. Meta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder. Jama Psychiatry. 72: 642-50. PMID 25993607 DOI: 10.1001/Jamapsychiatry.2015.0554  0.6
2015 Zhang W, Spector TD, Deloukas P, Bell JT, Engelhardt BE. Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements. Genome Biology. 16: 14. PMID 25616342 DOI: 10.1186/S13059-015-0581-9  0.6
2015 Mimno D, Blei DM, Engelhardt BE. Posterior predictive checks to quantify lack-of-fit in admixture models of latent population structure Proceedings of the National Academy of Sciences of the United States of America. 112: E3441-E3450. DOI: 10.1073/pnas.1412301112  0.6
2014 Mangravite LM, Engelhardt BE, Stephens M, Krauss RM. Mangravite et al. reply. Nature. 513: E3. PMID 25230670 DOI: 10.1038/Nature13630  0.92
2014 Hart AB, Gamazon ER, Engelhardt BE, Sklar P, Kähler AK, Hultman CM, Sullivan PF, Neale BM, Faraone SV, de Wit H, Cox NJ, Palmer AA. Genetic variation associated with euphorigenic effects of d-amphetamine is associated with diminished risk for schizophrenia and attention deficit hyperactivity disorder. Proceedings of the National Academy of Sciences of the United States of America. 111: 5968-73. PMID 24711425 DOI: 10.1073/Pnas.1318810111  0.92
2013 Mangravite LM, Engelhardt BE, Medina MW, Smith JD, Brown CD, Chasman DI, Mecham BH, Howie B, Shim H, Naidoo D, Feng Q, Rieder MJ, Chen YD, Rotter JI, Ridker PM, et al. A statin-dependent QTL for GATM expression is associated with statin-induced myopathy. Nature. 502: 377-80. PMID 23995691 DOI: 10.1038/Nature12508  0.92
2013 Brown CD, Mangravite LM, Engelhardt BE. Integrative Modeling of eQTLs and Cis-Regulatory Elements Suggests Mechanisms Underlying Cell Type Specificity of eQTLs Plos Genetics. 9. PMID 23935528 DOI: 10.1371/Journal.Pgen.1003649  0.92
2013 Mordelet F, Horton J, Hartemink AJ, Engelhardt BE, Gordân R. Stability selection for regression-based models of transcription factor-DNA binding specificity. Bioinformatics (Oxford, England). 29: i117-25. PMID 23812975 DOI: 10.1093/Bioinformatics/Btt221  0.92
2013 Muratore KE, Engelhardt BE, Srouji JR, Jordan MI, Brenner SE, Kirsch JF. Molecular function prediction for a family exhibiting evolutionary tendencies toward substrate specificity swapping: recurrence of tyrosine aminotransferase activity in the Iα subfamily. Proteins. 81: 1593-609. PMID 23671031 DOI: 10.1002/Prot.24318  0.92
2012 Hart AB, Engelhardt BE, Wardle MC, Sokoloff G, Stephens M, de Wit H, Palmer AA. Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13). Plos One. 7: e42646. PMID 22952603 DOI: 10.1371/Journal.Pone.0042646  0.92
2011 Engelhardt BE, Jordan MI, Srouji JR, Brenner SE. Genome-scale phylogenetic function annotation of large and diverse protein families. Genome Research. 21: 1969-80. PMID 21784873 DOI: 10.1101/Gr.104687.109  0.92
2010 Engelhardt BE, Stephens M. Analysis of population structure: a unifying framework and novel methods based on sparse factor analysis. Plos Genetics. 6: e1001117. PMID 20862358 DOI: 10.1371/Journal.Pgen.1001117  0.92
2010 Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, Nkadori E, Veyrieras JB, Stephens M, Gilad Y, Pritchard JK. Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature. 464: 768-72. PMID 20220758 DOI: 10.1038/Nature08872  0.92
2009 Engelhardt BE, Jordan MI, Repo ST, Brenner SE. Phylogenetic molecular function annotation. Journal of Physics. Conference Series. 180: 12024. PMID 20664722 DOI: 10.1088/1742-6596/180/1/012024  0.92
2006 Engelhardt BE, Jordan MI, Brenner SE. A graphical model for predicting protein molecular function Acm International Conference Proceeding Series. 148: 297-304. DOI: 10.1145/1143844.1143882  0.92
2005 Engelhardt BE, Jordan MI, Muratore KE, Brenner SE. Protein molecular function prediction by Bayesian phylogenomics. Plos Computational Biology. 1: e45. PMID 16217548 DOI: 10.1371/Journal.Pcbi.0010045  0.72
2003 Amir E, Engelhardt B. Factored planning Ijcai International Joint Conference On Artificial Intelligence. 929-935.  0.92
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