| Year |
Citation |
Score |
| 2019 |
Venzin OF, Oates AC. What are you synching about? Emerging complexity of notch signaling in the segmentation clock. Developmental Biology. PMID 31302101 DOI: 10.1016/J.Ydbio.2019.06.024 |
0.416 |
|
| 2018 |
LLeras Forero L, Narayanan R, Huitema LFA, VanBergen M, Apschner A, Peterson-Maduro J, Logister I, Valentin G, Morelli LG, Oates A, Schulte-Merker S. Segmentation of the zebrafish axial skeleton relies on notochord sheath cells and not on the segmentation clock. Elife. 7. PMID 29624170 DOI: 10.7554/Elife.33843 |
0.395 |
|
| 2018 |
Forero LL, Narayanan R, Huitema LF, VanBergen M, Apschner A, Peterson-Maduro J, Logister I, Valentin G, Morelli LG, Oates AC, Schulte-Merker S. Author response: Segmentation of the zebrafish axial skeleton relies on notochord sheath cells and not on the segmentation clock Elife. DOI: 10.7554/Elife.33843.043 |
0.343 |
|
| 2017 |
Richter S, Schulze U, Tomançak P, Oates AC. Small molecule screen in embryonic zebrafish using modular variations to target segmentation. Nature Communications. 8: 1901. PMID 29196645 DOI: 10.1038/S41467-017-01469-5 |
0.307 |
|
| 2017 |
Uriu K, Bhavna R, Oates AC, Morelli LG. A framework for quantification and physical modeling of cell mixing applied to oscillator synchronization in vertebrate somitogenesis. Biology Open. PMID 28652318 DOI: 10.1242/Bio.025148 |
0.419 |
|
| 2017 |
Naganathan SR, Oates AC. Mechanochemical coupling and developmental pattern formation Current Opinion in Systems Biology. 5: 104-111. DOI: 10.1016/J.Coisb.2017.09.007 |
0.365 |
|
| 2016 |
Liao BK, Oates AC. Delta-Notch signalling in segmentation. Arthropod Structure & Development. PMID 27888167 DOI: 10.1016/J.Asd.2016.11.007 |
0.415 |
|
| 2016 |
Jörg DJ, Oates AC, Jülicher F. Sequential pattern formation governed by signaling gradients. Physical Biology. 13: 05LT03. PMID 27727151 DOI: 10.1088/1478-3975/13/5/05Lt03 |
0.424 |
|
| 2016 |
Rajasekaran B, Uriu K, Valentin G, Tinevez JY, Oates AC. Object Segmentation and Ground Truth in 3D Embryonic Imaging. Plos One. 11: e0150853. PMID 27332860 DOI: 10.1371/Journal.Pone.0150853 |
0.309 |
|
| 2016 |
Liao BK, Jörg DJ, Oates AC. Faster embryonic segmentation through elevated Delta-Notch signalling. Nature Communications. 7: 11861. PMID 27302627 DOI: 10.1038/Ncomms11861 |
0.461 |
|
| 2016 |
Webb AB, Lengyel IM, Jörg DJ, Valentin G, Jülicher F, Morelli LG, Oates AC. Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock. Elife. 5. PMID 26880542 DOI: 10.7554/Elife.08438 |
0.431 |
|
| 2015 |
Jörg DJ, Morelli LG, Soroldoni D, Oates AC, Jülicher F. Continuum theory of gene expression waves during vertebrate segmentation. New Journal of Physics. 17: 093042. PMID 28725158 DOI: 10.1088/1367-2630/17/9/093042 |
0.436 |
|
| 2015 |
Webb AB, Oates AC. Timing by rhythms: Daily clocks and developmental rulers. Development, Growth & Differentiation. PMID 26542934 DOI: 10.1111/Dgd.12242 |
0.356 |
|
| 2015 |
Bergert M, Erzberger A, Desai RA, Aspalter IM, Oates AC, Charras G, Salbreux G, Paluch EK. Force transmission during adhesion-independent migration. Nature Cell Biology. 17: 524-9. PMID 25774834 DOI: 10.1038/Ncb3134 |
0.539 |
|
| 2015 |
Windner SE, Doris RA, Ferguson CM, Nelson AC, Valentin G, Tan H, Oates AC, Wardle FC, Devoto SH. Tbx6, Mesp-b and Ripply1 regulate the onset of skeletal myogenesis in zebrafish. Development (Cambridge, England). 142: 1159-68. PMID 25725067 DOI: 10.1242/Dev.113431 |
0.405 |
|
| 2015 |
Webb AB, Lengyel IM, Jörg DJ, Valentin G, Jülicher F, Morelli LG, Oates AC. Author response: Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock Elife. DOI: 10.7554/Elife.08438.029 |
0.317 |
|
| 2014 |
Rost F, Eugster C, Schröter C, Oates AC, Brusch L. Chevron formation of the zebrafish muscle segments. The Journal of Experimental Biology. 217: 3870-82. PMID 25267843 DOI: 10.1242/Jeb.102202 |
0.349 |
|
| 2014 |
Webb AB, Soroldoni D, Oswald A, Schindelin J, Oates AC. Generation of dispersed presomitic mesoderm cell cultures for imaging of the zebrafish segmentation clock in single cells. Journal of Visualized Experiments : Jove. PMID 25078855 DOI: 10.3791/50307 |
0.435 |
|
| 2014 |
Soroldoni D, Jörg DJ, Morelli LG, Richmond DL, Schindelin J, Jülicher F, Oates AC. Genetic oscillations. A Doppler effect in embryonic pattern formation. Science (New York, N.Y.). 345: 222-5. PMID 25013078 DOI: 10.1126/Science.1253089 |
0.351 |
|
| 2014 |
Uriu K, Morelli LG, Oates AC. Interplay between intercellular signaling and cell movement in development. Seminars in Cell & Developmental Biology. 35: 66-72. PMID 24882723 DOI: 10.1016/J.Semcdb.2014.05.011 |
0.335 |
|
| 2014 |
Bajard L, Morelli LG, Ares S, Pécréaux J, Jülicher F, Oates AC. Wnt-regulated dynamics of positional information in zebrafish somitogenesis. Development (Cambridge, England). 141: 1381-91. PMID 24595291 DOI: 10.1242/Dev.093435 |
0.361 |
|
| 2013 |
Valentin G, Oates AC. Opening a can of centipedes: new insights into mechanisms of body segmentation. Bmc Biology. 11: 116. PMID 24289333 DOI: 10.1186/1741-7007-11-116 |
0.334 |
|
| 2012 |
Richmond DL, Oates AC. The segmentation clock: inherited trait or universal design principle? Current Opinion in Genetics & Development. 22: 600-6. PMID 23149154 DOI: 10.1016/J.Gde.2012.10.003 |
0.363 |
|
| 2012 |
Schröter C, Ares S, Morelli LG, Isakova A, Hens K, Soroldoni D, Gajewski M, Jülicher F, Maerkl SJ, Deplancke B, Oates AC. Topology and dynamics of the zebrafish segmentation clock core circuit. Plos Biology. 10: e1001364. PMID 22911291 DOI: 10.1371/Journal.Pbio.1001364 |
0.352 |
|
| 2012 |
Uriu K, Ares S, Oates AC, Morelli LG. Optimal cellular mobility for synchronization arising from the gradual recovery of intercellular interactions. Physical Biology. 9: 036006. PMID 22562967 DOI: 10.1088/1478-3975/9/3/036006 |
0.311 |
|
| 2012 |
Bajard L, Oates AC. Breathe in and straighten your back: hypoxia, notch, and scoliosis. Cell. 149: 255-6. PMID 22500793 DOI: 10.1016/J.Cell.2012.03.024 |
0.348 |
|
| 2012 |
Morelli LG, Uriu K, Ares S, Oates AC. Computational approaches to developmental patterning. Science (New York, N.Y.). 336: 187-91. PMID 22499940 DOI: 10.1126/Science.1215478 |
0.333 |
|
| 2012 |
Oates AC, Morelli LG, Ares S. Patterning embryos with oscillations: structure, function and dynamics of the vertebrate segmentation clock. Development (Cambridge, England). 139: 625-39. PMID 22274695 DOI: 10.1242/Dev.063735 |
0.427 |
|
| 2011 |
Soroldoni D, Oates AC. Live transgenic reporters of the vertebrate embryo's Segmentation Clock. Current Opinion in Genetics & Development. 21: 600-5. PMID 21963131 DOI: 10.1016/J.Gde.2011.09.006 |
0.458 |
|
| 2011 |
Krol AJ, Roellig D, Dequéant ML, Tassy O, Glynn E, Hattem G, Mushegian A, Oates AC, Pourquié O. Evolutionary plasticity of segmentation clock networks. Development (Cambridge, England). 138: 2783-92. PMID 21652651 DOI: 10.1242/Dev.063834 |
0.461 |
|
| 2011 |
Roellig D, Morelli LG, Ares S, Jülicher F, Oates AC. SnapShot: the segmentation clock. Cell. 145: 800-800.e1. PMID 21620141 DOI: 10.1016/J.Cell.2011.05.007 |
0.392 |
|
| 2011 |
Oswald A, Oates AC. Control of endogenous gene expression timing by introns. Genome Biology. 12: 107. PMID 21463534 DOI: 10.1186/Gb-2011-12-3-107 |
0.454 |
|
| 2011 |
Dahmann C, Oates AC, Brand M. Boundary formation and maintenance in tissue development. Nature Reviews. Genetics. 12: 43-55. PMID 21164524 DOI: 10.1038/Nrg2902 |
0.327 |
|
| 2010 |
Strzelecka M, Oates AC, Neugebauer KM. Dynamic control of Cajal body number during zebrafish embryogenesis. Nucleus (Austin, Tex.). 1: 96-108. PMID 21327108 DOI: 10.4161/Nucl.1.1.10680 |
0.393 |
|
| 2010 |
Schröter C, Oates AC. Segment number and axial identity in a segmentation clock period mutant. Current Biology : Cb. 20: 1254-8. PMID 20637625 DOI: 10.1016/J.Cub.2010.05.071 |
0.395 |
|
| 2010 |
Herrgen L, Ares S, Morelli LG, Schröter C, Jülicher F, Oates AC. Intercellular coupling regulates the period of the segmentation clock. Current Biology : Cb. 20: 1244-53. PMID 20637620 DOI: 10.1016/J.Cub.2010.06.034 |
0.37 |
|
| 2009 |
Oates AC, Gorfinkiel N, González-Gaitán M, Heisenberg CP. Quantitative approaches in developmental biology. Nature Reviews. Genetics. 10: 517-30. PMID 19584811 DOI: 10.1038/Nrg2548 |
0.346 |
|
| 2009 |
Morelli LG, Ares S, Herrgen L, Schröter C, Jülicher F, Oates AC. Delayed coupling theory of vertebrate segmentation. Hfsp Journal. 3: 55-66. PMID 19492022 DOI: 10.2976/1.3027088 |
0.421 |
|
| 2009 |
Herrgen L, Schröter C, Bajard L, Oates AC. Multiple embryo time-lapse imaging of zebrafish development. Methods in Molecular Biology (Clifton, N.J.). 546: 243-54. PMID 19378108 DOI: 10.1007/978-1-60327-977-2_15 |
0.328 |
|
| 2009 |
Picker A, Roellig D, Pourquié O, Oates AC, Brand M. Tissue micromanipulation in zebrafish embryos. Methods in Molecular Biology (Clifton, N.J.). 546: 153-72. PMID 19378104 DOI: 10.1007/978-1-60327-977-2_11 |
0.323 |
|
| 2009 |
Soroldoni D, Hogan BM, Oates AC. Simple and efficient transgenesis with meganuclease constructs in zebrafish. Methods in Molecular Biology (Clifton, N.J.). 546: 117-30. PMID 19378101 DOI: 10.1007/978-1-60327-977-2_8 |
0.305 |
|
| 2009 |
Roellig D, Kumichel A, Krol A, Dequeant M, Tassy O, Hattem G, Glynn E, Oates A, Pourquie O. 15-P018 A phase-ordered microarray screen for cyclic genes in zebrafish reveals her genes as the conserved core of the somitogenesis clock Mechanisms of Development. 126: S252-S253. DOI: 10.1016/J.Mod.2009.06.662 |
0.376 |
|
| 2007 |
Riedel-Kruse IH, Müller C, Oates AC. Synchrony dynamics during initiation, failure, and rescue of the segmentation clock. Science (New York, N.Y.). 317: 1911-5. PMID 17702912 DOI: 10.1126/Science.1142538 |
0.403 |
|
| 2007 |
Kikuta H, Laplante M, Navratilova P, Komisarczuk AZ, Engström PG, Fredman D, Akalin A, Caccamo M, Sealy I, Howe K, Ghislain J, Pezeron G, Mourrain P, Ellingsen S, Oates AC, et al. Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates. Genome Research. 17: 545-55. PMID 17387144 DOI: 10.1101/Gr.6086307 |
0.448 |
|
| 2007 |
Shankaran SS, Sieger D, Schröter C, Czepe C, Pauly MC, Laplante MA, Becker TS, Oates AC, Gajewski M. Completing the set of h/E(spl) cyclic genes in zebrafish: her12 and her15 reveal novel modes of expression and contribute to the segmentation clock. Developmental Biology. 304: 615-32. PMID 17274976 DOI: 10.1016/J.Ydbio.2007.01.004 |
0.506 |
|
| 2007 |
Echeverri K, Oates AC. Coordination of symmetric cyclic gene expression during somitogenesis by Suppressor of Hairless involves regulation of retinoic acid catabolism. Developmental Biology. 301: 388-403. PMID 17098223 DOI: 10.1016/J.Ydbio.2006.10.003 |
0.443 |
|
| 2007 |
Tucker B, Hepperle C, Kortschak D, Rainbird B, Wells S, Oates AC, Lardelli M. Zebrafish Angiotensin II Receptor-like 1a (agtrl1a) is expressed in migrating hypoblast, vasculature, and in multiple embryonic epithelia. Gene Expression Patterns : Gep. 7: 258-65. PMID 17085078 DOI: 10.1016/J.Modgep.2006.09.006 |
0.43 |
|
| 2006 |
Langenberg T, Dracz T, Oates AC, Heisenberg CP, Brand M. Analysis and visualization of cell movement in the developing zebrafish brain. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 235: 928-33. PMID 16496282 DOI: 10.1002/Dvdy.20692 |
0.315 |
|
| 2005 |
Oates AC, Rohde LA, Ho RK. Generation of segment polarity in the paraxial mesoderm of the zebrafish through a T-box-dependent inductive event. Developmental Biology. 283: 204-14. PMID 15921674 DOI: 10.1016/J.Ydbio.2005.04.012 |
0.704 |
|
| 2005 |
Oates AC, Mueller C, Ho RK. Cooperative function of deltaC and her7 in anterior segment formation. Developmental Biology. 280: 133-49. PMID 15766754 DOI: 10.1016/J.Ydbio.2005.01.010 |
0.709 |
|
| 2004 |
Hogan BM, Hunter MP, Oates AC, Crowhurst MO, Hall NE, Heath JK, Prince VE, Lieschke GJ. Zebrafish gcm2 is required for gill filament budding from pharyngeal ectoderm. Developmental Biology. 276: 508-22. PMID 15581882 DOI: 10.1016/J.Ydbio.2004.09.018 |
0.453 |
|
| 2004 |
Rohde LA, Oates AC, Ho RK. A crucial interaction between embryonic red blood cell progenitors and paraxial mesoderm revealed in spadetail embryos. Developmental Cell. 7: 251-62. PMID 15296721 DOI: 10.1016/J.Devcel.2004.07.010 |
0.679 |
|
| 2003 |
Brownlie A, Hersey C, Oates AC, Paw BH, Falick AM, Witkowska HE, Flint J, Higgs D, Jessen J, Bahary N, Zhu H, Lin S, Zon L. Characterization of embryonic globin genes of the zebrafish. Developmental Biology. 255: 48-61. PMID 12618133 DOI: 10.1016/S0012-1606(02)00041-6 |
0.472 |
|
| 2002 |
Lieschke GJ, Oates AC, Paw BH, Thompson MA, Hall NE, Ward AC, Ho RK, Zon LI, Layton JE. Zebrafish SPI-1 (PU.1) marks a site of myeloid development independent of primitive erythropoiesis: implications for axial patterning. Developmental Biology. 246: 274-95. PMID 12051816 DOI: 10.1006/Dbio.2002.0657 |
0.707 |
|
| 2002 |
Oates AC, Ho RK. Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafish. Development (Cambridge, England). 129: 2929-46. PMID 12050140 |
0.702 |
|
| 2002 |
Coulthard MG, Duffy S, Down M, Evans B, Power M, Smith F, Stylianou C, Kleikamp S, Oates A, Lackmann M, Burns GF, Boyd AW. The role of the Eph-ephrin signalling system in the regulation of developmental patterning. The International Journal of Developmental Biology. 46: 375-384. DOI: 10.1387/Ijdb.12141423 |
0.386 |
|
| 2001 |
Lyons SE, Shue BC, Lei L, Oates AC, Zon LI, Liu PP. Molecular cloning, genetic mapping, and expression analysis of four zebrafish c/ebp genes. Gene. 281: 43-51. PMID 11750126 DOI: 10.1016/S0378-1119(01)00774-0 |
0.362 |
|
| 2001 |
Lieschke GJ, Oates AC, Crowhurst MO, Ward AC, Layton JE. Morphologic and functional characterization of granulocytes and macrophages in embryonic and adult zebrafish. Blood. 98: 3087-96. PMID 11698295 DOI: 10.1182/Blood.V98.10.3087 |
0.447 |
|
| 2001 |
Oates AC, Pratt SJ, Vail B, Yan Yl, Ho RK, Johnson SL, Postlethwait JH, Zon LI. The zebrafish klf gene family. Blood. 98: 1792-801. PMID 11535513 DOI: 10.1182/Blood.V98.6.1792 |
0.705 |
|
| 2001 |
Bruce AE, Oates AC, Prince VE, Ho RK. Additional hox clusters in the zebrafish: divergent expression patterns belie equivalent activities of duplicate hoxB5 genes. Evolution & Development. 3: 127-44. PMID 11440248 DOI: 10.1046/J.1525-142X.2001.003003127.X |
0.679 |
|
| 2001 |
Prince VE, Holley SA, Bally-Cuif L, Prabhakaran B, Oates AC, Ho RK, Vogt TF. Zebrafish lunatic fringe demarcates segmental boundaries. Mechanisms of Development. 105: 175-80. PMID 11429294 DOI: 10.1016/S0925-4773(01)00398-7 |
0.718 |
|
| 2001 |
Lyons SE, Shue BC, Oates AC, Zon LI, Liu PP. A novel myeloid-restricted zebrafish CCAAT/enhancer-binding protein with a potent transcriptional activation domain. Blood. 97: 2611-7. PMID 11313249 DOI: 10.1182/Blood.V97.9.2611 |
0.335 |
|
| 2000 |
Blake T, Adya N, Kim CH, Oates AC, Zon L, Chitnis A, Weinstein BM, Liu PP. Zebrafish homolog of the leukemia gene CBFB: its expression during embryogenesis and its relationship to scl and gata-1 in hematopoiesis. Blood. 96: 4178-84. PMID 11110689 DOI: 10.1182/Blood.V96.13.4178 |
0.461 |
|
| 2000 |
Ahn DG, Ruvinsky I, Oates AC, Silver LM, Ho RK. tbx20, a new vertebrate T-box gene expressed in the cranial motor neurons and developing cardiovascular structures in zebrafish. Mechanisms of Development. 95: 253-8. PMID 10906473 DOI: 10.1016/S0925-4773(00)00346-4 |
0.691 |
|
| 2000 |
Oates AC, Bruce AE, Ho RK. Too much interference: injection of double-stranded RNA has nonspecific effects in the zebrafish embryo. Developmental Biology. 224: 20-8. PMID 10898958 DOI: 10.1006/Dbio.2000.9761 |
0.671 |
|
| 2000 |
Ruvinsky I, Oates AC, Silver LM, Ho RK. The evolution of paired appendages in vertebrates: T-box genes in the zebrafish. Development Genes and Evolution. 210: 82-91. PMID 10664151 DOI: 10.1007/S004270050014 |
0.704 |
|
| 1999 |
Oates AC, Brownlie A, Pratt SJ, Irvine DV, Liao EC, Paw BH, Dorian KJ, Johnson SL, Postlethwait JH, Zon LI, Wilks AF. Gene duplication of zebrafish JAK2 homologs is accompanied by divergent embryonic expression patterns: only jak2a is expressed during erythropoiesis. Blood. 94: 2622-36. PMID 10515866 DOI: 10.1182/Blood.V94.8.2622.420K39_2622_2636 |
0.52 |
|
| 1999 |
Oates AC, Wollberg P, Pratt SJ, Paw BH, Johnson SL, Ho RK, Postlethwait JH, Zon LI, Wilks AF. Zebrafish stat3 is expressed in restricted tissues during embryogenesis and stat1 rescues cytokine signaling in a STAT1-deficient human cell line. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 215: 352-70. PMID 10417824 DOI: 10.1002/(Sici)1097-0177(199908)215:4<352::Aid-Aja7>3.0.Co;2-J |
0.674 |
|
| 1999 |
Oates AC, Lackmann M, Power MA, Brennan C, Down LM, Do C, Evans B, Holder N, Boyd AW. An early developmental role for eph-ephrin interaction during vertebrate gastrulation. Mechanisms of Development. 83: 77-94. PMID 10381569 DOI: 10.1016/S0925-4773(99)00036-2 |
0.434 |
|
| 1999 |
Halford MM, Oates AC, Hibbs ML, Wilks AF, Stacker SA. Genomic structure and expression of the mouse growth factor receptor related to tyrosine kinases (Ryk). The Journal of Biological Chemistry. 274: 7379-90. PMID 10066802 DOI: 10.1074/Jbc.274.11.7379 |
0.351 |
|
| 1998 |
Oates AC, Bonkovsky JL, Irvine DV, Kelly LE, Thomas JB, Wilks AF. Embryonic expression and activity of doughnut, a second RYK homolog in Drosophila. Mechanisms of Development. 78: 165-9. PMID 9858720 DOI: 10.1016/S0925-4773(98)00167-1 |
0.448 |
|
| 1998 |
Oates AC, Wollberg P, Achen MG, Wilks AF. Sampling the genomic pool of protein tyrosine kinase genes using the polymerase chain reaction with genomic DNA. Biochemical and Biophysical Research Communications. 249: 660-7. PMID 9731193 DOI: 10.1006/Bbrc.1998.9003 |
0.391 |
|
| 1998 |
Thompson MA, Ransom DG, Pratt SJ, MacLennan H, Kieran MW, Detrich HW, Vail B, Huber TL, Paw B, Brownlie AJ, Oates AC, Fritz A, Gates MA, Amores A, Bahary N, et al. The cloche and spadetail genes differentially affect hematopoiesis and vasculogenesis. Developmental Biology. 197: 248-69. PMID 9630750 DOI: 10.1006/Dbio.1998.8887 |
0.498 |
|
| 1998 |
Liao EC, Paw BH, Oates AC, Pratt SJ, Postlethwait JH, Zon LI. SCL/Tal-1 transcription factor acts downstream of cloche to specify hematopoietic and vascular progenitors in zebrafish. Genes & Development. 12: 621-6. PMID 9499398 DOI: 10.1101/Gad.12.5.621 |
0.378 |
|
| 1996 |
Ernst M, Oates A, Dunn AR. Gp130-mediated signal transduction in embryonic stem cells involves activation of Jak and Ras/mitogen-activated protein kinase pathways. The Journal of Biological Chemistry. 271: 30136-43. PMID 8939963 DOI: 10.1074/Jbc.271.47.30136 |
0.308 |
|
| Show low-probability matches. |