Dawn Thompson - Publications

Affiliations: 
University of California, San Francisco, San Francisco, CA 

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Bao XR, Ong SE, Goldberger O, Peng J, Sharma R, Thompson DA, Vafai SB, Cox AG, Marutani E, Ichinose F, Goessling W, Regev A, Carr SA, Clish CB, Mootha VK. Mitochondrial dysfunction remodels one-carbon metabolism in human cells. Elife. 5. PMID 27307216 DOI: 10.7554/eLife.10575  1
2016 Solomon KV, Haitjema CH, Henske JK, Gilmore SP, Borges-Rivera D, Lipzen A, Brewer HM, Purvine SO, Wright AT, Theodorou MK, Grigoriev IV, Regev A, Thompson DA, O'Malley MA. Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes. Science (New York, N.Y.). PMID 26912365 DOI: 10.1126/science.aad1431  1
2016 Knaack SA, Thompson DA, Roy S. Reconstruction and Analysis of the Evolution of Modular Transcriptional Regulatory Programs Using Arboretum. Methods in Molecular Biology (Clifton, N.J.). 1361: 375-89. PMID 26483033 DOI: 10.1007/978-1-4939-3079-1_21  1
2016 Thompson DA. Comparative Transcriptomics in Yeasts. Methods in Molecular Biology (Clifton, N.J.). 1361: 67-76. PMID 26483016 DOI: 10.1007/978-1-4939-3079-1_4  1
2015 Roy S, Thompson D. Evolution of regulatory networks in Candida glabrata: learning to live with the human host. Fems Yeast Research. PMID 26449820 DOI: 10.1093/femsyr/fov087  1
2015 Thompson D, Regev A, Roy S. Comparative Analysis of Gene Regulatory Networks: From Network Reconstruction to Evolution. Annual Review of Cell and Developmental Biology. PMID 26355593 DOI: 10.1146/annurev-cellbio-100913-012908  1
2015 Peacock OJ, Western MJ, Batterham AM, Stathi A, Standage M, Tapp A, Bennett P, Thompson D. Multidimensional individualised Physical ACTivity (Mi-PACT) - a technology-enabled intervention to promote physical activity in primary care: study protocol for a randomised controlled trial. Trials. 16: 381. PMID 26314577 DOI: 10.1186/s13063-015-0892-x  0.4
2015 Lopez KN, Karlsten M, Bonaduce De Nigris F, King J, Salciccioli K, Jiang A, Marelli A, Kovacs AH, Fordis M, Thompson D. Understanding Age-based Transition Needs: Perspectives from Adolescents and Adults with Congenital Heart Disease. Congenital Heart Disease. PMID 26171927 DOI: 10.1111/chd.12283  0.44
2015 Western MJ, Peacock OJ, Stathi A, Thompson D. The understanding and interpretation of innovative technology-enabled multidimensional physical activity feedback in patients at risk of future chronic disease. Plos One. 10: e0126156. PMID 25938455 DOI: 10.1371/journal.pone.0126156  0.4
2015 Ford CB, Funt JM, Abbey D, Issi L, Guiducci C, Martinez DA, Delorey T, Li BY, White TC, Cuomo C, Rao RP, Berman J, Thompson DA, Regev A. The evolution of drug resistance in clinical isolates of Candida albicans. Elife. 4: e00662. PMID 25646566 DOI: 10.7554/eLife.00662  1
2014 Abbey DA, Funt J, Lurie-Weinberger MN, Thompson DA, Regev A, Myers CL, Berman J. YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens. Genome Medicine. 6: 100. PMID 25505934 DOI: 10.1186/s13073-014-0100-8  1
2014 Solomon KV, Haitjema CH, Thompson DA, O'Malley MA. Extracting data from the muck: deriving biological insight from complex microbial communities and non-model organisms with next generation sequencing. Current Opinion in Biotechnology. 28: 103-10. PMID 24503479 DOI: 10.1016/j.copbio.2014.01.007  1
2013 Cooray SN, Gobbetti T, Montero-Melendez T, McArthur S, Thompson D, Clark AJ, Flower RJ, Perretti M. Ligand-specific conformational change of the G-protein-coupled receptor ALX/FPR2 determines proresolving functional responses. Proceedings of the National Academy of Sciences of the United States of America. 110: 18232-7. PMID 24108355 DOI: 10.1073/pnas.1308253110  1
2013 Thompson DA, Roy S, Chan M, Styczynski MP, Pfiffner J, French C, Socha A, Thielke A, Napolitano S, Muller P, Kellis M, Konieczka JH, Wapinski I, Regev A. Correction: Evolutionary principles of modular gene regulation in yeasts. Elife. 2: e01114. PMID 23840936 DOI: 10.7554/eLife.01114  1
2013 Thompson DA, Roy S, Chan M, Styczynsky MP, Pfiffner J, French C, Socha A, Thielke A, Napolitano S, Muller P, Kellis M, Konieczka JH, Wapinski I, Regev A. Evolutionary principles of modular gene regulation in yeasts. Elife. 2: e00603. PMID 23795289 DOI: 10.7554/eLife.00603  1
2013 Adiconis X, Borges-Rivera D, Satija R, DeLuca DS, Busby MA, Berlin AM, Sivachenko A, Thompson DA, Wysoker A, Fennell T, Gnirke A, Pochet N, Regev A, Levin JZ. Comparative analysis of RNA sequencing methods for degraded or low-input samples. Nature Methods. 10: 623-9. PMID 23685885 DOI: 10.1038/nmeth.2483  1
2013 Roy S, Wapinski I, Pfiffner J, French C, Socha A, Konieczka J, Habib N, Kellis M, Thompson D, Regev A. Arboretum: reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules. Genome Research. 23: 1039-50. PMID 23640720 DOI: 10.1101/gr.146233.112  1
2013 Tschische P, Madhavan A, Athiligam J, Milan-Lobo L, Thompson D, Wilbrecht L, Whistler JL. Trafficking of the D2 Dopamine Receptor Promotes Drug-Induced Changes in Neuronal and Behavioral Plasticity Catecholamine Research in the 21st Century: Abstracts and Graphical Abstracts, 10th International Catecholamine Symposium, 2012. 97-98. DOI: 10.1016/B978-0-12-800044-1.00084-2  1
2013 Solomon K, Haitjema C, Borges-Rivera D, Thompson DA, Regev A, O'Malley MA. Discovery and regulation of biomass-degrading enzymes from anaerobic gut fungi using next-generation sequencing Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area At the 2013 Aiche Annual Meeting: Global Challenges For Engineering a Sustainable Future. 268.  1
2012 Chen YL, Konieczka JH, Springer DJ, Bowen SE, Zhang J, Silao FG, Bungay AA, Bigol UG, Nicolas MG, Abraham SN, Thompson DA, Regev A, Heitman J. Convergent Evolution of Calcineurin Pathway Roles in Thermotolerance and Virulence in Candida glabrata. G3 (Bethesda, Md.). 2: 675-91. PMID 22690377 DOI: 10.1534/g3.112.002279  1
2011 Kühhorn J, Götz A, Hübner H, Thompson D, Whistler J, Gmeiner P. Development of a bivalent dopamine D₂ receptor agonist. Journal of Medicinal Chemistry. 54: 7911-9. PMID 21999579 DOI: 10.1021/jm2009919  1
2011 Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology. 29: 644-52. PMID 21572440 DOI: 10.1038/nbt.1883  1
2011 Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, Young SK, Furuya K, Guo Y, Pidoux A, Chen HM, et al. Comparative functional genomics of the fission yeasts. Science (New York, N.Y.). 332: 930-6. PMID 21511999 DOI: 10.1126/science.1203357  1
2011 Tschammer N, Elsner J, Goetz A, Ehrlich K, Schuster S, Ruberg M, Kühhorn J, Thompson D, Whistler J, Hübner H, Gmeiner P. Highly potent 5-aminotetrahydropyrazolopyridines: enantioselective dopamine D3 receptor binding, functional selectivity, and analysis of receptor-ligand interactions. Journal of Medicinal Chemistry. 54: 2477-91. PMID 21388142 DOI: 10.1021/jm101639t  1
2011 Thompson D, Whistler JL. Trafficking properties of the D5 dopamine receptor. Traffic (Copenhagen, Denmark). 12: 644-56. PMID 21348911 DOI: 10.1111/j.1600-0854.2011.01179.x  1
2011 Thompson D, Whistler JL. Dopamine D(3) receptors are down-regulated following heterologous endocytosis by a specific interaction with G protein-coupled receptor-associated sorting protein-1. The Journal of Biological Chemistry. 286: 1598-608. PMID 21030592 DOI: 10.1074/jbc.M110.158345  1
2010 Yassour M, Pfiffner J, Levin JZ, Adiconis X, Gnirke A, Nusbaum C, Thompson DA, Friedman N, Regev A. Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species. Genome Biology. 11: R87. PMID 20796282 DOI: 10.1186/gb-2010-11-8-r87  1
2010 Levin JZ, Yassour M, Adiconis X, Nusbaum C, Thompson DA, Friedman N, Gnirke A, Regev A. Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nature Methods. 7: 709-15. PMID 20711195 DOI: 10.1038/nmeth.1491  1
2010 Anderson JB, Funt J, Thompson DA, Prabhu S, Socha A, Sirjusingh C, Dettman JR, Parreiras L, Guttman DS, Regev A, Kohn LM. Determinants of divergent adaptation and Dobzhansky-Muller interaction in experimental yeast populations. Current Biology : Cb. 20: 1383-8. PMID 20637622 DOI: 10.1016/j.cub.2010.06.022  1
2010 Tsankov AM, Thompson DA, Socha A, Regev A, Rando OJ. The role of nucleosome positioning in the evolution of gene regulation. Plos Biology. 8: e1000414. PMID 20625544 DOI: 10.1371/journal.pbio.1000414  1
2010 Thompson D, Martini L, Whistler JL. Altered ratio of D1 and D2 dopamine receptors in mouse striatum is associated with behavioral sensitization to cocaine. Plos One. 5: e11038. PMID 20543951 DOI: 10.1371/journal.pone.0011038  1
2010 Wapinski I, Pfiffner J, French C, Socha A, Thompson DA, Regev A. Gene duplication and the evolution of ribosomal protein gene regulation in yeast. Proceedings of the National Academy of Sciences of the United States of America. 107: 5505-10. PMID 20212107 DOI: 10.1073/pnas.0911905107  1
2010 Martini L, Thompson D, Kharazia V, Whistler JL. Differential regulation of behavioral tolerance to WIN55,212-2 by GASP1. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. 35: 1363-73. PMID 20164830 DOI: 10.1038/npp.2010.6  1
2010 Tschische P, Moser E, Thompson D, Vischer HF, Parzmair GP, Pommer V, Platzer W, Schwarzbraun T, Schaider H, Smit MJ, Martini L, Whistler JL, Waldhoer M. The G-protein coupled receptor associated sorting protein GASP-1 regulates the signalling and trafficking of the viral chemokine receptor US28. Traffic (Copenhagen, Denmark). 11: 660-74. PMID 20102549 DOI: 10.1111/j.1600-0854.2010.1045.x  1
2009 Fischer G, Thompson D, Wortman JR, Fairhead C. Unraveling the genomic diversity of small eukaryotes. Genome Biology. 10: 318. PMID 20003475 DOI: 10.1186/gb-2009-10-12-318  1
2009 Thompson DA, Regev A. Fungal regulatory evolution: cis and trans in the balance. Febs Letters. 583: 3959-65. PMID 19914250 DOI: 10.1016/j.febslet.2009.11.032  1
2009 Wohlbach DJ, Thompson DA, Gasch AP, Regev A. From elements to modules: regulatory evolution in Ascomycota fungi. Current Opinion in Genetics & Development. 19: 571-8. PMID 19879128 DOI: 10.1016/j.gde.2009.09.007  1
2009 Yassour M, Kaplan T, Fraser HB, Levin JZ, Pfiffner J, Adiconis X, Schroth G, Luo S, Khrebtukova I, Gnirke A, Nusbaum C, Thompson DA, Friedman N, Regev A. Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proceedings of the National Academy of Sciences of the United States of America. 106: 3264-9. PMID 19208812 DOI: 10.1073/pnas.0812841106  1
2008 Styczynski MP, Thompson DA, Pfiffner J, French C, Regev A. A functional genomics analysis of central carbon metabolism evolution in yeasts Aiche Annual Meeting, Conference Proceedings 1
2007 Thompson D, Pusch M, Whistler JL. Changes in G protein-coupled receptor sorting protein affinity regulate postendocytic targeting of G protein-coupled receptors. The Journal of Biological Chemistry. 282: 29178-85. PMID 17635908 DOI: 10.1074/jbc.M704014200  1
2006 Thompson DA, Desai MM, Murray AW. Ploidy controls the success of mutators and nature of mutations during budding yeast evolution. Current Biology : Cb. 16: 1581-90. PMID 16920619 DOI: 10.1016/j.cub.2006.06.070  1
1999 Thompson DA, Stahl FW. Genetic control of recombination partner preference in yeast meiosis: Isolation and characterization of mutants elevated for meiotic unequal sister-chromatid recombination Genetics. 153: 621-641. PMID 10511544  1
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