Sruthilaya K. Swaminathan - Related publications

Affiliations: 
2012 Neurobiology University of Chicago, Chicago, IL 
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50 most relevant papers in past 60 days:
Year Citation  Score
2019 Fraga FC, Valério A, de Oliveira VA, Di Luccio M, de Oliveira D. Effect of magnetic field on the Eversa® Transform 2.0 enzyme: Enzymatic activity and structural conformation. International Journal of Biological Macromolecules. 122: 653-658. PMID 30416097 DOI: 10.1016/j.ijbiomac.2018.10.171   
2019 Buechner GS, Millington ME, Perry K, D'Antonio EL. The crystal structure of glucokinase from Leishmania braziliensis. Molecular and Biochemical Parasitology. 227: 47-52. PMID 30571993 DOI: 10.1016/j.molbiopara.2018.12.002   
2019 Isupov MN, Boyko KM, Sutter JM, James P, Sayer C, Schmidt M, Schoenheit P, Nikolaeva AY, Stekhanova TN, Mardanov AV, Ravin NV, Bezsudnova EY, Popov VO, Littlechild JA. Thermostable Branched-Chain Amino Acid Transaminases From the Archaea and : Biochemical and Structural Characterization. Frontiers in Bioengineering and Biotechnology. 7: 7. PMID 30733943 DOI: 10.3389/fbioe.2019.00007   
2019 Mydy LS, Cristobal JR, Katigbak RD, Bauer P, Reyes AC, Kamerlin SCL, Richard JP, Gulick AM. Human Glycerol 3-Phosphate Dehydrogenase: X-Ray Crystal Structures that Guide the Interpretation of Mutagenesis Studies. Biochemistry. PMID 30640445 DOI: 10.1021/acs.biochem.8b01103   
2019 Topaz GR, Epiter-Smith V, Robolo C, Emad M, Ford V, Daley J, Byron J, Stieglitz KA. Characterization of Recombinant Fructose 1,6-bisphosphatase (FBPase) Gene Mutations: Evidence of Inhibition/Activation of FBPase Protein by Gene Mutation. Bioscience Reports. PMID 30683805 DOI: 10.1042/BSR20180960   
2019 Loizzi M, Miller DJ, Allemann RK. Silent catalytic promiscuity in the high-fidelity terpene cyclase δ-cadinene synthase. Organic & Biomolecular Chemistry. PMID 30652178 DOI: 10.1039/c8ob02821d   
2019 Tang W, Lan D, Zhao Z, Li S, Li X, Wang Y. A Thermostable Monoacylglycerol Lipase from Marine sp. 12AMOR1: Biochemical Characterization and Mutagenesis Study. International Journal of Molecular Sciences. 20. PMID 30759774 DOI: 10.3390/ijms20030780   
2019 Zhi Y, Narindoshvili T, Bogomolnaya L, Talamantes M, El Saadi A, Andrews-Polymenis H, Raushel FM. Deciphering the Enzymatic Function of the Bovine Enteric Infection Related Protein YfeJ from Salmonella enterica Serotype Typhimurium. Biochemistry. PMID 30715856 DOI: 10.1021/acs.biochem.8b01283   
2019 Lin SF, Li CK, Chung YP. Identification of a novel lactose oxidase in NUK-21. Febs Open Bio. 9: 364-373. PMID 30761260 DOI: 10.1002/2211-5463.12582   
2019 Machovina MM, Ellis ES, Carney TJ, Brushett FR, DuBois JL. How a cofactor-free protein environment lowers the barrier to O reactivity. The Journal of Biological Chemistry. PMID 30602564 DOI: 10.1074/jbc.RA118.006144   
2019 Paul A, Mishra A, Surolia A, Vijayan M. Structural studies on M. tuberculosis argininosuccinate lyase and its liganded complex: Insights into catalytic mechanism. Iubmb Life. PMID 30615268 DOI: 10.1002/iub.2000   
2019 Nakamichi Y, Fouquet T, Ito S, Watanabe M, Matsushika A, Inoue H. Structural and functional characterization of a bifunctional GH30-7 xylanase B from the filamentous fungus . The Journal of Biological Chemistry. PMID 30655295 DOI: 10.1074/jbc.RA118.007207   
2019 Said ZSAM, Arifi FAM, Salleh AB, Rahman RNZRA, Chor ALT, Latip W, Ali MSM. Unravelling protein -organic solvent interaction of organic solvent tolerant elastase from Pseudomonas aeruginosa strain K crystal structure. International Journal of Biological Macromolecules. PMID 30658145 DOI: 10.1016/j.ijbiomac.2019.01.056   
2019 O'Hagan D, Bello D, Rubanu MG, Bandaranayaka N, Götze JP, Bühl M. Acetyl coenzyme A analogues as rationally designed inhibitors of citrate synthase. Chembiochem : a European Journal of Chemical Biology. PMID 30605257 DOI: 10.1002/cbic.201800700   
2019 Rahman Pour R, Ehibhatiomhan A, Huang Y, Ashley B, Rashid GM, Mendel-Williams S, Bugg TDH. Protein engineering of Pseudomonas fluorescens peroxidase Dyp1B for oxidation of phenolic and polymeric lignin substrates. Enzyme and Microbial Technology. 123: 21-29. PMID 30686347 DOI: 10.1016/j.enzmictec.2019.01.002   
2019 Males A, Davies GJ. Structural studies of a surface-entropy reduction mutant of O-GlcNAcase. Acta Crystallographica. Section D, Structural Biology. 75: 70-78. PMID 30644846 DOI: 10.1107/S2059798318016595   
2019 Jeng WY, Liu CI, Lu TJ, Lin HJ, Wang NC, Wang AH. Crystal structures of the C-terminally truncated endoglucanase Cel9Q from Clostridium thermocellum complexed with cellodextrins and Tris. Chembiochem : a European Journal of Chemical Biology. PMID 30609216 DOI: 10.1002/cbic.201800789   
2019 Ellis-Guardiola K, Rui H, Beckner RL, Srivastava P, Sukumar N, Roux B, Lewis JC. Crystal Structure and Conformational Dynamics of Pyrococcus furiosus Prolyl Oligopeptidase. Biochemistry. PMID 30786206 DOI: 10.1021/acs.biochem.9b00031   
2019 Qiao Y, Yan J, Jia J, Xue J, Qu X, Hu Y, Deng Z, Bi H, Zhu D. Characterization of the Biosynthetic Gene Cluster for the Antibiotic Armeniaspirols in Streptomyces armeniacus. Journal of Natural Products. PMID 30747534 DOI: 10.1021/acs.jnatprod.8b00753   
2019 Gholivand K, Pooyan M, Mohammadpanah F, Pirastefar F, Junk PC, Wang J, Ebrahimi Valmoozi AA, Mani-Varnosfaderani A. Synthesis, crystal structure and biological evaluation of new phosphoramide derivatives as urease inhibitors using docking, QSAR and kinetic studies. Bioorganic Chemistry. 86: 482-493. PMID 30772649 DOI: 10.1016/j.bioorg.2019.01.064   
2019 Jia Q, Xie W. Alternative conformation induced by substrate binding for Arabidopsis thaliana N6-methyl-AMP deaminase. Nucleic Acids Research. PMID 30721978 DOI: 10.1093/nar/gkz070   
2019 Bachosz K, Synoradzki K, Staszak M, Pinelo M, Meyer AS, Zdarta J, Jesionowski T. Bioconversion of xylose to xylonic acid via co-immobilized dehydrogenases for conjunct cofactor regeneration. Bioorganic Chemistry. PMID 30739714 DOI: 10.1016/j.bioorg.2019.01.043   
2019 Mera A, de Lima MZT, Bernardes A, Garcia W, Muniz JRC. Low-resolution structure, oligomerization and its role on the enzymatic activity of a sucrose-6-phosphate hydrolase from Bacillus licheniformis. Amino Acids. PMID 30673850 DOI: 10.1007/s00726-018-02690-2   
2019 Bonk BM, Weis JW, Tidor B. Machine Learning Identifies Chemical Characteristics that Promote Enzyme Catalysis. Journal of the American Chemical Society. PMID 30761897 DOI: 10.1021/jacs.8b13879   
2019 Chetri PB, Shukla R, Tripathi T. Identification and characterization of glyceraldehyde 3-phosphate dehydrogenase from Fasciola gigantica. Parasitology Research. PMID 30706165 DOI: 10.1007/s00436-019-06225-w   
2019 Knihtila R, Volmar AY, Meilleur F, Mattos C. Titration of ionizable groups in proteins using multiple neutron data sets from a single crystal: application to the small GTPase Ras. Acta Crystallographica. Section F, Structural Biology Communications. 75: 111-115. PMID 30713162 DOI: 10.1107/S2053230X18018125   
2019 Ullah SF, Souza AA, Hamann PRV, Ticona ARP, Oliveira GM, Barbosa JARG, Freitas SM, Noronha EF. Structural and functional characterisation of xylanase purified from Penicillium chrysogenum produced in response to raw agricultural waste. International Journal of Biological Macromolecules. PMID 30654038 DOI: 10.1016/j.ijbiomac.2019.01.057   
2019 He J, Tang F, Chen D, Yu B, Luo Y, Zheng P, Mao X, Yu J, Yu F. Design, expression and functional characterization of a thermostable xylanase from Trichoderma reesei. Plos One. 14: e0210548. PMID 30650138 DOI: 10.1371/journal.pone.0210548   
2019 Bala SC, Haque N, Pillalamarri V, Reddi R, Kashyap R, Marapaka AK, Addlagatta A. Discovery of a new class of type 1 methionine aminopeptidases that have relaxed substrate specificity. International Journal of Biological Macromolecules. PMID 30763644 DOI: 10.1016/j.ijbiomac.2019.02.055   
2019 Nagy EZA, Nagy CL, Filip A, Nagy K, Gál E, Tőtős R, Poppe L, Paizs C, Bencze LC. Exploring the substrate scope of ferulic acid decarboxylase (FDC1) from Saccharomyces cerevisiae. Scientific Reports. 9: 647. PMID 30679592 DOI: 10.1038/s41598-018-36977-x   
2019 Glasgow EM, Vander Meulen KA, Takasuka TE, Bianchetti CM, Bergeman LF, Deutsch S, Fox BG. Extent and Origins of Functional Diversity in a Subfamily of Glycoside Hydrolases. Journal of Molecular Biology. PMID 30685401 DOI: 10.1016/j.jmb.2019.01.024   
2019 Shields CM, Zvonok N, Zvonok A, Makriyannis A. Biochemical and Proteomic Characterization of Recombinant Human α/β Hydrolase Domain 6. Scientific Reports. 9: 890. PMID 30696836 DOI: 10.1038/s41598-018-36633-4   
2019 Sharma G, Hu Q, Jayasinghe-Arachchige VM, Paul TJ, Schenk G, Prabhakar R. Investigating coordination flexibility of glycerophosphodiesterase (GpdQ) through interactions with mono-, di-, and triphosphoester (NPP, BNPP, GPE, and paraoxon) substrates. Physical Chemistry Chemical Physics : Pccp. PMID 30785142 DOI: 10.1039/c8cp07031h   
2019 Adhav A, Harne S, Bhide A, Giri A, Pananghat G, Joshi R. Mechanistic Insights into Enzymatic Catalysis by Trehalase from the insect gut endosymbiont Enterobacter cloacae. The Febs Journal. PMID 30657252 DOI: 10.1111/febs.14760   
2019 Yamaguchi H, Kamegawa A, Nakata K, Kashiwagi T, Mizukoshi T, Fujiyoshi Y, Tani K. Structural insights into thermostabilization of leucine dehydrogenase from its atomic structure by cryo-electron microscopy. Journal of Structural Biology. 205: 11-21. PMID 30543982 DOI: 10.1016/j.jsb.2018.12.001   
2019 Škedelj V, Fonović UP, Molek P, Magnet S, Mainardi JL, Blanot D, Gobec S, Stojan J, Zega A. Kinetic mechanism of Enterococcus faeciumd-aspartate ligase. Biochimie. 158: 217-223. PMID 30682389 DOI: 10.1016/j.biochi.2019.01.012   
2019 Fischer C, Kleinschmidt T. Effect of glucose depletion during the synthesis of galactooligosaccharides using a trienzymatic system. Enzyme and Microbial Technology. 121: 45-50. PMID 30554644 DOI: 10.1016/j.enzmictec.2018.10.009   
2019 Yang Y, Ghatge S, Hur HG. Characterization of a novel thermostable carboxylesterase from thermoalkaliphilic bacterium Bacillus thermocloaceae. Bioscience, Biotechnology, and Biochemistry. 1-10. PMID 30739541 DOI: 10.1080/09168451.2019.1574555   
2019 Mukherjee KW, Huddleston J, Narindoshvili T, Nemmara V, Raushel FM. Functional Characterization of the ycjQRS Gene Cluster from Escherichia coli: A Novel Pathway for the Transformation of D-Gulosides to D-Glucosides. Biochemistry. PMID 30742415 DOI: 10.1021/acs.biochem.8b01278   
2019 Watanabe Y, Watanabe S, Itoh Y, Watanabe Y. Crystal structure of substrate-bound bifunctional proline racemase/hydroxyproline epimerase from a hyperthermophilic archaeon. Biochemical and Biophysical Research Communications. PMID 30773259 DOI: 10.1016/j.bbrc.2019.01.141   
2019 Wang Y, Kim JY, Song YH, Li ZP, Yoon SH, Uddin Z, Ban YJ, Lee KW, Park KH. Highly potent bacterial neuraminidase inhibitors, chromenone derivatives from Flemingia philippinensis. International Journal of Biological Macromolecules. PMID 30682484 DOI: 10.1016/j.ijbiomac.2019.01.105   
2019 Son J, Kalafatovic D, Kumar M, Yoo B, Cornejo MA, Contel M, Ulijn RV. Customizing Morphology, Size, and Response Kinetics of Matrix Metalloproteinase-Responsive Nanostructures by Systematic Peptide Design. Acs Nano. PMID 30689363 DOI: 10.1021/acsnano.8b07401   
2019 Czech L, Höppner A, Kobus S, Seubert A, Riclea R, Dickschat JS, Heider J, Smits SHJ, Bremer E. Illuminating the catalytic core of ectoine synthase through structural and biochemical analysis. Scientific Reports. 9: 364. PMID 30674920 DOI: 10.1038/s41598-018-36247-w   
2019 Mohammad SF, Feng Y, Yang G. Optimization of cell culture and cell disruption processes to enhance the production of thermophilic cellulase FnCel5A in E.coli using response surface methodology. Plos One. 14: e0210595. PMID 30653549 DOI: 10.1371/journal.pone.0210595   
2019 Marcolongo L, La Cara F, Del Monaco G, Paixão SM, Alves L, Marques IP, Ionata E. A novel β-xylosidase from Anoxybacillus sp. 3M towards an improved agro-industrial residues saccharification. International Journal of Biological Macromolecules. 122: 1224-1234. PMID 30219517 DOI: 10.1016/j.ijbiomac.2018.09.075   
2019 Thornbury M, Sicheri J, Slaine P, Getz LJ, Finlayson-Trick E, Cook J, Guinard C, Boudreau N, Jakeman D, Rohde J, McCormick C. Characterization of novel lignocellulose-degrading enzymes from the porcupine microbiome using synthetic metagenomics. Plos One. 14: e0209221. PMID 30601862 DOI: 10.1371/journal.pone.0209221   
2019 Boran R, Ugur A, Sarac N, Ceylan O. Characterisation of OC125-8 lipase for oily wastewater treatment. 3 Biotech. 9: 5. PMID 30622843 DOI: 10.1007/s13205-018-1539-x   
2019 Kawahara-Nakagawa Y, Nishikawa K, Nakashima S, Inoue S, Ohta T, Ogura T, Shigeta Y, Fukutani K, Yagi T, Higuchi Y. New Assay Method Based on Raman Spectroscopy for Enzymes Reacting with Gaseous Substrates. Protein Science : a Publication of the Protein Society. PMID 30609080 DOI: 10.1002/pro.3569   
2019 Costa DMA, Gómez SV, de Araújo SS, Pereira MS, Alves RB, Favaro DC, Hengge AC, Nagem RAP, Brandão TAS. Catalytic mechanism for the conversion of salicylate into catechol by the flavin-dependent monooxygenase salicylate hydroxylase. International Journal of Biological Macromolecules. PMID 30703421 DOI: 10.1016/j.ijbiomac.2019.01.135   
2019 Pickl M, Kurakin S, Cantú Reinhard FG, Schmid P, Pöcheim A, Winkler CK, Kroutil W, de Visser SP, Faber K. Mechanistic Studies of Fatty Acid Activation by CYP152 Peroxygenases Reveal Unexpected Desaturase Activity. Acs Catalysis. 9: 565-577. PMID 30637174 DOI: 10.1021/acscatal.8b03733