Dmitry Krotov - Related publications

Affiliations: 
2014 Physics Princeton University, Princeton, NJ 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Exelby K, Herrera-Delgado E, Garcia Perez L, Perez-Carrasco R, Sagner A, Metzis V, Sollich P, Briscoe J. Precision of Tissue Patterning is Controlled by Dynamical Properties of Gene Regulatory Networks. Development (Cambridge, England). PMID 33547135 DOI: 10.1242/dev.197566   
2021 Murad NF, Silva-Brandão KL, Brandão MM. Mechanisms behind polyphagia in a pest insect: Responses of Spodoptera frugiperda (J.E. Smith) strains to preferential and alternative larval host plants assessed with gene regulatory networks. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194687. PMID 33561559 DOI: 10.1016/j.bbagrm.2021.194687   
2021 Wu Q, Ma T, Liu Q, Milton DK, Zhang Y, Chen S. ICN: Extracting interconnected communities in gene Co-expression networks. Bioinformatics (Oxford, England). PMID 33508087 DOI: 10.1093/bioinformatics/btab047   
2021 Bar H, Bang S. A mixture model to detect edges in sparse co-expression graphs with an application for comparing breast cancer subtypes. Plos One. 16: e0246945. PMID 33571253 DOI: 10.1371/journal.pone.0246945   
2021 Zhu D, Yuan T, Gao J, Xu Q, Xue K, Zhu W, Tang J, Liu F, Wang J, Yu C. Correlation between cortical gene expression and resting-state functional network centrality in healthy young adults. Human Brain Mapping. PMID 33570215 DOI: 10.1002/hbm.25362   
2021 Lu J, Dumitrascu B, McDowell IC, Jo B, Barrera A, Hong LK, Leichter SM, Reddy TE, Engelhardt BE. Causal network inference from gene transcriptional time-series response to glucocorticoids. Plos Computational Biology. 17: e1008223. PMID 33513136 DOI: 10.1371/journal.pcbi.1008223   
2021 Sarkar S, Hubbard JB, Halter M, Plant AL. Information Thermodynamics and Reducibility of Large Gene Networks. Entropy (Basel, Switzerland). 23. PMID 33401415 DOI: 10.3390/e23010063   
2021 Pardo-Diaz J, Bozhilova LV, Beguerisse-Díaz M, Poole PS, Deane CM, Reinert G. Robust gene coexpression networks using signed distance correlation. Bioinformatics (Oxford, England). PMID 33523234 DOI: 10.1093/bioinformatics/btab041   
2021 Diniz WJS, Crouse MS, Cushman RA, McLean KJ, Caton JS, Dahlen CR, Reynolds LP, Ward AK. Cerebrum, liver, and muscle regulatory networks uncover maternal nutrition effects in developmental programming of beef cattle during early pregnancy. Scientific Reports. 11: 2771. PMID 33531552 DOI: 10.1038/s41598-021-82156-w   
2021 Xu S, Hong L. Navigating flower development with a new atlas. Developmental Cell. 56: 399-400. PMID 33621487 DOI: 10.1016/j.devcel.2021.02.001   
2021 von Scheidt M, Zhao Y, de Aguiar Vallim TQ, Che N, Wierer M, Seldin MM, Franzén O, Kurt Z, Pang S, Bongiovanni D, Yamamoto M, Edwards PA, Ruusalepp A, Kovacic JC, Mann M, et al. The Transcription Factor MAFF Regulates an Atherosclerosis Relevant Network Connecting Inflammation and Cholesterol Metabolism. Circulation. PMID 33626882 DOI: 10.1161/CIRCULATIONAHA.120.050186   
2021 Yang X, Liu D, Yan Z, Liu C, Feng G. Regulation of flowering under short photoperiods based on transcriptomic and metabolomic analysis in Phaseolus vulgaris L. Molecular Genetics and Genomics : Mgg. PMID 33449160 DOI: 10.1007/s00438-020-01751-0   
2021 Hou J, Ye X, Li C, Wang Y. K-Module Algorithm: An Additional Step to Improve the Clustering Results of WGCNA Co-Expression Networks. Genes. 12. PMID 33445666 DOI: 10.3390/genes12010087   
2021 Zhang P, Southey BR, Sweedler JV, Pradhan A, Rodriguez-Zas SL. Enhanced Understanding of Molecular Interactions and Function Underlying Pain Processes Through Networks of Transcript Isoforms, Genes, and Gene Families. Advances and Applications in Bioinformatics and Chemistry : Aabc. 14: 49-69. PMID 33633454 DOI: 10.2147/AABC.S284986   
2021 Ding H, Yang Y, Xue Y, Seninge L, Gong H, Safavi R, Califano A, Stuart JM. Prioritizing transcriptional factors in gene regulatory networks with PageRank. Iscience. 24: 102017. PMID 33490923 DOI: 10.1016/j.isci.2020.102017   
2021 Luo Y, Wang J, Lu W, Liu Y, Huang Y, Luo D. Identification of a disease-specific gene expression profile of children with acute asthma by weighted gene co-expression network analysis. Genes & Genetic Systems. PMID 33642437 DOI: 10.1266/ggs.20-00031   
2021 Luo Y, Wang J, Lu W, Liu Y, Huang Y, Luo D. Identification of a disease-specific gene expression profile of children with acute asthma by weighted gene co-expression network analysis. Genes & Genetic Systems. PMID 33642437 DOI: 10.1266/ggs.20-00031   
2021 Wright H, Aylwin CF, Toro CA, Ojeda SR, Lomniczi A. Polycomb represses a gene network controlling puberty via modulation of histone demethylase Kdm6b expression. Scientific Reports. 11: 1996. PMID 33479437 DOI: 10.1038/s41598-021-81689-4   
2021 Wu R, Zhuang H, Mei YK, Sun JY, Dong T, Zhao LL, Fan ZN, Liu L. Systematic identification of key functional modules and genes in esophageal cancer. Cancer Cell International. 21: 134. PMID 33632229 DOI: 10.1186/s12935-021-01826-x   
2021 Qu J, Gou X, Zhang W, Li T, Xue J, Guo D, Xu S. New insights into the response of maize to fluctuations in the light environment. Molecular Genetics and Genomics : Mgg. PMID 33630129 DOI: 10.1007/s00438-021-01761-6   
2021 Min W, Wan X, Chang TH, Zhang S. A Novel Sparse Graph-Regularized Singular Value Decomposition Model and Its Application to Genomic Data Analysis. Ieee Transactions On Neural Networks and Learning Systems. PMID 33556027 DOI: 10.1109/TNNLS.2021.3054635   
2021 Chen L, Wu F, Zhang J. NAC and MYB Families and Lignin Biosynthesis-Related Members Identification and Expression Analysis in . Plants (Basel, Switzerland). 10. PMID 33562564 DOI: 10.3390/plants10020303   
2021 Refahi Y, Zardilis A, Michelin G, Wightman R, Leggio B, Legrand J, Faure E, Vachez L, Armezzani A, Risson AE, Zhao F, Das P, Prunet N, Meyerowitz EM, Godin C, et al. A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control. Developmental Cell. 56: 540-556.e8. PMID 33621494 DOI: 10.1016/j.devcel.2021.01.019   
2021 Lee T, Lee H. Shared Blood Transcriptomic Signatures between Alzheimer's Disease and Diabetes Mellitus. Biomedicines. 9. PMID 33406707 DOI: 10.3390/biomedicines9010034   
2021 Jacobs A, Elmer KR. Alternative splicing and gene expression play contrasting roles in the parallel phenotypic evolution of a salmonid fish. Molecular Ecology. PMID 33502030 DOI: 10.1111/mec.15817   
2021 Tian J, Wang J, Roeder K. ESCO: single cell expression simulation incorporating gene co-expression. Bioinformatics (Oxford, England). PMID 33624750 DOI: 10.1093/bioinformatics/btab116   
2021 Pan Q, Li Z, Ju X, Hou C, Xiao Y, Shi R, Fu C, Danchin A, You C. Escherichia coli segments its controls on carbon-dependent gene expression into global and specific regulations. Microbial Biotechnology. PMID 33650807 DOI: 10.1111/1751-7915.13776   
2021 Sarkar A, Mishra P, Kahveci T. Data perturbation and recovery of time series gene expression data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 33566765 DOI: 10.1109/TCBB.2021.3058342   
2021 Merlevede A, Legault EM, Drugge V, Barker RA, Drouin-Ouellet J, Olariu V. A quantitative model of cellular decision making in direct neuronal reprogramming. Scientific Reports. 11: 1514. PMID 33452356 DOI: 10.1038/s41598-021-81089-8   
2021 Li C, Pu B, Gu L, Zhang M, Shen H, Yuan Y, Liao L. Identification of key modules and hub genes in glioblastoma multiforme based on co-expression network analysis. Febs Open Bio. PMID 33423377 DOI: 10.1002/2211-5463.13078   
2021 Wu J, Xia X, Hu Y, Fang X, Orsulic S. Identification of Infertility-Associated Topologically Important Genes Using Weighted Co-expression Network Analysis. Frontiers in Genetics. 12: 580190. PMID 33613630 DOI: 10.3389/fgene.2021.580190   
2021 Thakur V, Bains S, Kaur R, Singh K. Identification and characterization of SlbHLH, SlDof and SlWRKY transcription factors interacting with SlDPD gene involved in costunolide biosynthesis in Saussurea lappa. International Journal of Biological Macromolecules. PMID 33482203 DOI: 10.1016/j.ijbiomac.2021.01.114   
2021 Rivera HE, Aichelman HE, Fifer JE, Kriefall NG, Wuitchik DM, Wuitchik SJS, Davies SW. A framework for understanding gene expression plasticity and its influence on stress tolerance. Molecular Ecology. PMID 33503298 DOI: 10.1111/mec.15820   
2021 Witt E, Svetec N, Benjamin S, Zhao L. Transcription factors drive opposite relationships between gene age and tissue specificity in male and female Drosophila gonads. Molecular Biology and Evolution. PMID 33481021 DOI: 10.1093/molbev/msab011   
2021 Li X, Duan C, Li R, Wang D. Insights into the Mechanism of Bovine Spermiogenesis Based on Comparative Transcriptomic Studies. Animals : An Open Access Journal From Mdpi. 11. PMID 33466297 DOI: 10.3390/ani11010080   
2021 Cao Y, Cai X, Zhu Q, Li N. Screening and identification of potential biomarkers for obstructive sleep apnea via microarray analysis. Medicine. 100: e24435. PMID 33530245 DOI: 10.1097/MD.0000000000024435   
2021 Liu XT, Liu TT, Wu MY, Chen QX, Zhuang JX, Wang Q. Identifying (Gene ID: 2192) as a Potential Melanoma Biomarker for Melanoma based on an Analysis of microRNA Expression Profiles in the GEO and TCGA Databases. Genetic Testing and Molecular Biomarkers. 25: 68-78. PMID 33470885 DOI: 10.1089/gtmb.2020.0274   
2021 Viñas R, Andrés-Terré H, Liò P, Bryson K. Adversarial generation of gene expression data. Bioinformatics (Oxford, England). PMID 33471074 DOI: 10.1093/bioinformatics/btab035   
2021 Zhang W, Qiu Q, Sun B, Xu W. A four-genes based diagnostic signature for osteoarthritis. Rheumatology International. PMID 33555399 DOI: 10.1007/s00296-021-04795-6   
2021 Woolford CA, Mitchell AP. Diminished Expression Alleles for Analysis of Virulence Traits and Genetic Interactions in Candida albicans. Methods in Molecular Biology (Clifton, N.J.). 2260: 1-13. PMID 33405027 DOI: 10.1007/978-1-0716-1182-1_1   
2021 Han Z, Wang Q, Wu X, Wang J, Gao L, Guo R, Wu J. Comprehensive RNA expression profile of therapeutic adipose‑derived mesenchymal stem cells co‑cultured with degenerative nucleus pulposus cells. Molecular Medicine Reports. 23. PMID 33398382 DOI: 10.3892/mmr.2021.11824   
2021 Helbling JC, Kinouchi K, Trifilieff P, Sassone-Corsi P, Moisan MP. Combined Gene Expression and Chromatin Immunoprecipitation From a Single Mouse Hippocampus. Current Protocols. 1: e33. PMID 33566459 DOI: 10.1002/cpz1.33   
2021 Yang Z, Hui Y, Peng H, Zhang H, Li M, Song L, Li F, Cui X. Identification of a PLCE1‑regulated competing endogenous RNA regulatory network for esophageal squamous cell carcinoma. Oncology Reports. PMID 33650665 DOI: 10.3892/or.2021.7921   
2021 Lin Y, Zhao H, Kotlarz M, Jiang J. Enhancer-mediated reporter gene expression in Arabidopsis thaliana: a forward genetic screen. The Plant Journal : For Cell and Molecular Biology. PMID 33547831 DOI: 10.1111/tpj.15189   
2021 Xu B. Prediction and analysis of hub genes between glioblastoma and low-grade glioma using bioinformatics analysis. Medicine. 100: e23513. PMID 33545929 DOI: 10.1097/MD.0000000000023513   
2021 Zhang Z, Zhao S, Wang K, Shang M, Chen Z, Yang H, Chen Y, Chen B. Identification of biomarkers associated with cervical lymph node metastasis in papillary thyroid carcinoma: Evidence from an integrated bioinformatic analysis. Clinical Hemorheology and Microcirculation. PMID 33554894 DOI: 10.3233/CH-201074   
2021 Meng Y, Li C, Liu CX. Immune cell infiltration landscape and immune marker molecular typing in preeclampsia. Bioengineered. 12: 540-554. PMID 33535891 DOI: 10.1080/21655979.2021.1875707   
2021 Ding T, Zhang R, Zhang H, Zhou Z, Liu C, Wu M, Wang H, Dong H, Liu J, Yao JL, Yan Z. Identification of gene co-expression networks and key genes regulating flavonoid accumulation in apple (Malus × domestica) fruit skin. Plant Science : An International Journal of Experimental Plant Biology. 304: 110747. PMID 33568292 DOI: 10.1016/j.plantsci.2020.110747   
2021 Wu C, Wang C, Zhai B, Zhao Y, Zhao Z, Yuan Z, Fu X, Zhang M. Study on the region-specific expression of epididymis mRNA in the rams. Plos One. 16: e0245933. PMID 33493206 DOI: 10.1371/journal.pone.0245933   
2021 Dai L, Weiss RB, Dunn DM, Ramirez A, Paul S, Korenberg JR. Core Transcriptional Networks in Williams Syndrome: IGF1-PI3K-AKT-mTOR, MAPK and Actin Signaling at the Synapse Echo Autism. Human Molecular Genetics. PMID 33564861 DOI: 10.1093/hmg/ddab041