| Year |
Citation |
Score |
| 2020 |
de Bernadi Schneider A, Jacob Machado D, Guirales S, Janies DA. FLAVi: An Enhanced Annotator for Viral Genomes of . Viruses. 12. PMID 32824044 DOI: 10.3390/v12080892 |
0.52 |
|
| 2020 |
Yared S, Gebressielasie A, Damodaran L, Bonnell V, Lopez K, Janies D, Carter TE. Insecticide resistance in Anopheles stephensi in Somali Region, eastern Ethiopia. Malaria Journal. 19: 180. PMID 32398055 DOI: 10.1186/s12936-020-03252-2 |
0.4 |
|
| 2020 |
Balkew M, Mumba P, Dengela D, Yohannes G, Getachew D, Yared S, Chibsa S, Murphy M, George K, Lopez K, Janies D, Choi SH, Spear J, Irish SR, Carter TE. Geographical distribution of Anopheles stephensi in eastern Ethiopia. Parasites & Vectors. 13: 35. PMID 31959237 DOI: 10.1186/s13071-020-3904-y |
0.4 |
|
| 2019 |
Janies D, Hernández-Díaz YQ, Solís-Marín FA, Lopez K, Alexandrov B, Galac M, Herrera J, Cobb J, Ebert TA, Bosch I. Discovery of Adults Linked to Cloning Oceanic Starfish Larvae (, Asteroidea: Echinodermata). The Biological Bulletin. 236: 174-185. PMID 31167087 DOI: 10.1086/703233 |
0.36 |
|
| 2019 |
Carter TE, Yared S, Hansel S, Lopez K, Janies D. Sequence-based identification of Anopheles species in eastern Ethiopia. Malaria Journal. 18: 135. PMID 30992003 DOI: 10.1186/s12936-019-2768-0 |
0.4 |
|
| 2018 |
Carter TE, Yared S, Gebresilassie A, Bonnell V, Damodaran L, Lopez K, Ibrahim M, Mohammed S, Janies D. First detection of Anopheles stephensi Liston, 1901 (Diptera: Culicidae) in Ethiopia using molecular and morphological approaches. Acta Tropica. PMID 30189199 DOI: 10.1016/j.actatropica.2018.09.001 |
0.4 |
|
| 2018 |
Jacob Machado D, Janies D, Brouwer C, Grant T. A new strategy to infer circularity applied to four new complete frog mitogenomes. Ecology and Evolution. 8: 4011-4018. PMID 29721275 DOI: 10.1002/ece3.3918 |
0.52 |
|
| 2017 |
Linchangco GV, Foltz DW, Reid R, Williams J, Nodzak C, Kerr AM, Miller AK, Hunter R, Wilson NG, Nielsen WJ, Mah CL, Rouse GW, Wray GA, Janies DA. The phylogeny of extant starfish (Asteroidea: Echinodermata) including Xyloplax, based on comparative transcriptomics. Molecular Phylogenetics and Evolution. PMID 28757447 DOI: 10.1016/j.ympev.2017.07.022 |
0.36 |
|
| 2016 |
Malone RW, Homan J, Callahan MV, Glasspool-Malone J, Damodaran L, Schneider Ade B, Zimler R, Talton J, Cobb RR, Ruzic I, Smith-Gagen J, Janies D, Wilson J. Zika Virus: Medical Countermeasure Development Challenges. Plos Neglected Tropical Diseases. 10: e0004530. PMID 26934531 DOI: 10.1371/journal.pntd.0004530 |
1 |
|
| 2016 |
Janies DA, Witter Z, Linchangco GV, Foltz DW, Miller AK, Kerr AM, Jay J, Reid RW, Wray GA. EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms. Bmc Bioinformatics. 17: 48. PMID 26800861 DOI: 10.1186/s12859-016-0883-2 |
1 |
|
| 2015 |
Clouse RM, Linchangco GV, Kerr AM, Reid RW, Janies DA. Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms. Royal Society Open Science. 2: 150377. PMID 27017967 DOI: 10.1098/rsos.150377 |
1 |
|
| 2015 |
Jones CE, Zandawala M, Semmens DC, Anderson S, Hanson GR, Janies DA, Elphick MR. Identification of a neuropeptide precursor protein that gives rise to a "cocktail" of peptides that bind Cu(II) and generate metal-linked dimers. Biochimica Et Biophysica Acta. PMID 26475641 DOI: 10.1016/j.bbagen.2015.10.008 |
1 |
|
| 2015 |
Janies D, Witter Z, Gibson C, Kraft T, Senturk IF, Çatalyürek Ü. Syndromic Surveillance of Infectious Diseases meets Molecular Epidemiology in a Workflow and Phylogeographic Application. Studies in Health Technology and Informatics. 216: 766-70. PMID 26262155 DOI: 10.3233/978-1-61499-564-7-766 |
1 |
|
| 2015 |
Christensen AB, Herman JL, Elphick MR, Kober KM, Janies D, Linchangco G, Semmens DC, Bailly X, Vinogradov SN, Hoogewijs D. Phylogeny of Echinoderm Hemoglobins. Plos One. 10: e0129668. PMID 26247465 DOI: 10.1371/journal.pone.0129668 |
1 |
|
| 2015 |
Attwood SW, Ibaraki M, Saitoh Y, Nihei N, Janies DA. Comparative Phylogenetic Studies on Schistosoma japonicum and Its Snail Intermediate Host Oncomelania hupensis: Origins, Dispersal and Coevolution. Plos Neglected Tropical Diseases. 9: e0003935. PMID 26230619 DOI: 10.1371/journal.pntd.0003935 |
1 |
|
| 2015 |
Hoffmann M, Luo Y, Monday SR, Gonzalez-Escalona N, Ottesen AR, Muruvanda T, Wang C, Kastanis G, Keys C, Janies D, Senturk IF, Catalyurek UV, Wang H, Hammack TS, Wolfgang WJ, et al. Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States. The Journal of Infectious Diseases. PMID 25995194 DOI: 10.1093/infdis/jiv297 |
1 |
|
| 2015 |
Handelman SK, Aaronson JM, Seweryn M, Voronkin I, Kwiek JJ, Sadee W, Verducci JS, Janies DA. Cladograms with Path to Event (ClaPTE): a novel algorithm to detect associations between genotypes or phenotypes using phylogenies. Computers in Biology and Medicine. 58: 1-13. PMID 25577610 DOI: 10.1016/j.compbiomed.2014.12.013 |
1 |
|
| 2015 |
Grace-Lema DM, Yared S, Quitadamo A, Janies DA, Wheeler WC, Balkew M, Hailu A, Warburg A, Clouse RM. A phylogeny of sand flies (Diptera: Psychodidae: Phlebotominae), using recent Ethiopian collections and a broad selection of publicly available DNA sequence data Systematic Entomology. 40: 733-744. DOI: 10.1111/syen.12135 |
1 |
|
| 2015 |
Janies DA, Pomeroy LW, Krueger C, Zhang Y, Senturk IF, Kaya K, Çatalyürek ÜV. Phylogenetic visualization of the spread of H7 influenza A viruses Cladistics. DOI: 10.1111/cla.12107 |
1 |
|
| 2014 |
Mates JM, Kumar SB, Bazan J, Mefford M, Voronkin I, Handelman S, Mwapasa V, Ackerman W, Janies D, Kwiek JJ. Genotypic and phenotypic heterogeneity in the U3R region of HIV type 1 subtype C. Aids Research and Human Retroviruses. 30: 102-12. PMID 23826737 DOI: 10.1089/AID.2013.0026 |
1 |
|
| 2013 |
Goldberg DW, Cockburn MG, Hammond TA, Jacquez GM, Janies D, Knoblock C, Kuhn W, Pultar E, Raubal M. Envisioning a future for a Spatial-Health Cybergis Marketplace Healthgis 2013 - Proc. of the 2nd Acm Sigspatial Int. Workshop On the Use of Gis in Public Health, in Conjunction With the 21st Acm Sigspatial Int. Conf. On Advances in Geographic Information Systems. 27-30. DOI: 10.1145/2535708.2535716 |
1 |
|
| 2013 |
Janies DA, Studer J, Handelman SK, Linchangco G. A comparison of supermatrix and supertree methods for multilocus phylogenetics using organismal datasets Cladistics. 29: 560-566. DOI: 10.1111/cla.12014 |
1 |
|
| 2013 |
Zhuang L, Cressie N, Pomeroy L, Janies D. Multi-species SIR models from a dynamical Bayesian perspective Theoretical Ecology. 6: 457-473. DOI: 10.1007/s12080-013-0180-x |
1 |
|
| 2013 |
Cai Z, Eulenstein O, Janies D, Schwartz D. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7875. |
1 |
|
| 2012 |
Janies DA, Pomeroy LW, Aaronson JM, Handelman S, Hardman J, Kawalec K, Bitterman T, Wheeler WC. Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service. Cladistics : the International Journal of the Willi Hennig Society. 28: 483-488. PMID 32313365 DOI: 10.1111/j.1096-0031.2012.00401.x |
0.92 |
|
| 2012 |
Newman SH, Hill NJ, Spragens KA, Janies D, Voronkin IO, Prosser DJ, Yan B, Lei F, Batbayar N, Natsagdorj T, Bishop CM, Butler PJ, Wikelski M, Balachandran S, Mundkur T, et al. Eco-virological approach for assessing the role of wild birds in the spread of avian influenza H5N1 along the Central Asian Flyway. Plos One. 7: e30636. PMID 22347393 DOI: 10.1371/journal.pone.0030636 |
1 |
|
| 2012 |
Bokhari SH, Pomeroy LW, Janies DA. Reassortment Networks and the evolution of pandemic H1N1 swine-origin influenza. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 214-27. PMID 22076498 DOI: 10.1109/TCBB.2011.95 |
1 |
|
| 2012 |
Janies DA, Pomeroy LW, Aaronson JM, Handelman S, Hardman J, Kawalec K, Bitterman T, Wheeler WC. Analysis and visualization of h7 influenza using genomic, evolutionary and geographic information in a modular web service Cladistics. 28: 483-488. DOI: 10.1111/j.1096-0031.2012.00401.x |
1 |
|
| 2012 |
Chakrabarty P, Lam C, Hardman J, Aaronson J, House PH, Janies DA. SpeciesMap: A web-based application for visualizing the overlap of distributions and pollution events, with a list of fishes put at risk by the 2010 Gulf of Mexico oil spill Biodiversity and Conservation. 21: 1865-1876. DOI: 10.1007/s10531-012-0284-4 |
1 |
|
| 2011 |
Janies DA, Treseder T, Alexandrov B, Habib F, Chen JJ, Ferreira R, Çatalyürek Ü, Varón A, Wheeler WC. The Supramap project: linking pathogen genomes with geography to fight emergent infectious diseases. Cladistics : the International Journal of the Willi Hennig Society. 27: 61-66. PMID 32313364 DOI: 10.1111/j.1096-0031.2010.00314.x |
0.92 |
|
| 2011 |
Studer J, Janies DA. Global spread and evolution of viral haemorrhagic septicaemia virus. Journal of Fish Diseases. 34: 741-7. PMID 21916899 DOI: 10.1111/j.1365-2761.2011.01290.x |
1 |
|
| 2011 |
Griffen AL, Beall CJ, Firestone ND, Gross EL, Difranco JM, Hardman JH, Vriesendorp B, Faust RA, Janies DA, Leys EJ. CORE: a phylogenetically-curated 16S rDNA database of the core oral microbiome. Plos One. 6: e19051. PMID 21544197 DOI: 10.1371/journal.pone.0019051 |
1 |
|
| 2011 |
Kumar SB, Handelman SK, Voronkin I, Mwapasa V, Janies D, Rogerson SJ, Meshnick SR, Kwiek JJ. Different regions of HIV-1 subtype C env are associated with placental localization and in utero mother-to-child transmission. Journal of Virology. 85: 7142-52. PMID 21543508 DOI: 10.1128/JVI.01955-10 |
1 |
|
| 2011 |
Janies DA, Voight JR, Daly M. Echinoderm phylogeny including Xyloplax, a progenetic asteroid. Systematic Biology. 60: 420-38. PMID 21525529 DOI: 10.1093/sysbio/syr044 |
1 |
|
| 2011 |
Hersh W, Jacko JA, Greenes R, Tan J, Janies D, Embi PJ, Payne PR. Health-care hit or miss? Nature. 470: 327-9. PMID 21331020 DOI: 10.1038/470327a |
1 |
|
| 2011 |
Janies DA, Treseder T, Alexandrov B, Habib F, Chen JJ, Ferreira R, Çatalyürek U, Varón A, Wheeler WC. The Supramap project: Linking pathogen genomes with geography to fight emergent infectious diseases Cladistics. 27: 61-66. DOI: 10.1111/j.1096-0031.2010.00314.x |
1 |
|
| 2010 |
Gross EL, Leys EJ, Gasparovich SR, Firestone ND, Schwartzbaum JA, Janies DA, Asnani K, Griffen AL. Bacterial 16S sequence analysis of severe caries in young permanent teeth. Journal of Clinical Microbiology. 48: 4121-8. PMID 20826648 DOI: 10.1128/JCM.01232-10 |
1 |
|
| 2010 |
Bulach D, Halpin R, Spiro D, Pomeroy L, Janies D, Boyle DB. Molecular analysis of H7 avian influenza viruses from Australia and New Zealand: genetic diversity and relationships from 1976 to 2007. Journal of Virology. 84: 9957-66. PMID 20668069 DOI: 10.1128/JVI.00930-10 |
1 |
|
| 2010 |
Janies DA, Voronkin IO, Das M, Hardman J, Treseder TW, Studer J. Genome informatics of influenza A: from data sharing to shared analytical capabilities. Animal Health Research Reviews / Conference of Research Workers in Animal Diseases. 11: 73-9. PMID 20591214 DOI: 10.1017/S1466252310000083 |
1 |
|
| 2010 |
Bokhari SH, Janies DA. Reassortment networks for investigating the evolution of segmented viruses. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 288-98. PMID 20431148 DOI: 10.1109/TCBB.2008.73 |
1 |
|
| 2010 |
Janies DA, Voronkin IO, Studer J, Hardman J, Alexandrov BB, Treseder TW, Valson C. Selection for resistance to oseltamivir in seasonal and pandemic H1N1 influenza and widespread co-circulation of the lineages. International Journal of Health Geographics. 9: 13. PMID 20181276 DOI: 10.1186/1476-072X-9-13 |
1 |
|
| 2010 |
Hovmöller R, Alexandrov B, Hardman J, Janies D. Tracking the geographical spread of avian influenza (H5N1) with multiple phylogenetic trees Cladistics. 26: 1-13. DOI: 10.1111/j.1096-0031.2009.00297.x |
1 |
|
| 2009 |
Hill AW, Guralnick RP, Wilson MJ, Habib F, Janies D. Evolution of drug resistance in multiple distinct lineages of H5N1 avian influenza. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 9: 169-78. PMID 19022400 DOI: 10.1016/j.meegid.2008.10.006 |
1 |
|
| 2009 |
Yilmaz A, Nishiyama MY, Fuentes BG, Souza GM, Janies D, Gray J, Grotewold E. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiology. 149: 171-80. PMID 18987217 DOI: 10.1104/pp.108.128579 |
1 |
|
| 2008 |
Janies D, Habib F, Alexandrov B, Hill A, Pol D. Evolution of genomes, host shifts and the geographic spread of SARS-CoV and related coronaviruses. Cladistics : the International Journal of the Willi Hennig Society. 24: 111-130. PMID 32313363 DOI: 10.1111/j.1096-0031.2008.00199.x |
0.36 |
|
| 2008 |
Ott M, Zola J, Aluru S, Johnson AD, Janies D, Stamatakis A. Large-scale phylogenetic analysis on current HPC architectures Scientific Programming. 16: 255-270. DOI: 10.3233/SPR-2008-0247 |
1 |
|
| 2008 |
Janies D, Habib F, Alexandrov B, Hill A, Pol D. Evolution of genomes, host shifts and the geographic spread of SARS-CoV and related coronaviruses Cladistics. 24: 111-130. DOI: 10.1111/j.1096-0031.2008.00199.x |
1 |
|
| 2008 |
Janies D, Pol D. Large-scale phylogenetic analysis of emerging infectious diseases Lecture Notes in Mathematics. 1922: 39-76. DOI: 10.1007/978-3-540-74331-6_2 |
1 |
|
| 2007 |
Hill AW, Alexandrov B, Guralnick RP, Janies D. Genomic analysis and geographic visualization of H5N1 and SARS-CoV. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 975. PMID 18694075 |
1 |
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| 2007 |
Salzberg SL, Kingsford C, Cattoli G, Spiro DJ, Janies DA, Aly MM, Brown IH, Couacy-Hymann E, De Mia GM, Dung do H, Guercio A, Joannis T, Maken Ali AS, Osmani A, Padalino I, et al. Genome analysis linking recent European and African influenza (H5N1) viruses. Emerging Infectious Diseases. 13: 713-8. PMID 17553249 DOI: 10.3201/eid1305.070013 |
1 |
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| 2007 |
Zhang X, Hasoksuz M, Spiro D, Halpin R, Wang S, Vlasova A, Janies D, Jones LR, Ghedin E, Saif LJ. Quasispecies of bovine enteric and respiratory coronaviruses based on complete genome sequences and genetic changes after tissue culture adaptation. Virology. 363: 1-10. PMID 17434558 DOI: 10.1016/j.virol.2007.03.018 |
1 |
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| 2007 |
Habib F, Johnson AD, Bundschuh R, Janies D. Large scale genotype-phenotype correlation analysis based on phylogenetic trees. Bioinformatics (Oxford, England). 23: 785-8. PMID 17267431 DOI: 10.1093/bioinformatics/btm003 |
1 |
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| 2007 |
Zhang X, Hasoksuz M, Spiro D, Halpin R, Wang S, Stollar S, Janies D, Hadya N, Tang Y, Ghedin E, Saif L. Complete genomic sequences, a key residue in the spike protein and deletions in nonstructural protein 3b of US strains of the virulent and attenuated coronaviruses, transmissible gastroenteritis virus and porcine respiratory coronavirus. Virology. 358: 424-35. PMID 17023013 DOI: 10.1016/j.virol.2006.08.051 |
1 |
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| 2006 |
Kurc T, Janies DA, Johnson AD, Langella S, Oster S, Hastings S, Habib F, Camerlengo T, Ervin D, Catalyurek UV, Saltz JH. An XML-based System for Synthesis of Data from Disparate Databases Journal of the American Medical Informatics Association. 13: 289-301. PMID 16501185 DOI: 10.1197/jamia.M1848 |
1 |
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| 2005 |
Clouse R, Janies D, Kerr AM. Resurrection of Bohadschia bivittata from B. marmorata (Holothuroidea: Holothuriidae) based on behavioral, morphological, and mitochondrial DNA evidence. Zoology (Jena, Germany). 108: 27-39. PMID 16351952 DOI: 10.1016/j.zool.2004.07.007 |
1 |
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| 2005 |
Wang QH, Han MG, Funk JA, Bowman G, Janies DA, Saif LJ. Genetic diversity and recombination of porcine sapoviruses. Journal of Clinical Microbiology. 43: 5963-72. PMID 16333083 DOI: 10.1128/JCM.43.12.5963-5972.2005 |
1 |
|
| 2005 |
Kerr AM, Janies DA, Clouse RM, Samyn Y, Kuszak J, Kim J. Molecular phylogeny of coral-reef sea cucumbers (Holothuriidae: Aspidochirotida) based on 16S mitochondrial ribosomal DNA sequence. Marine Biotechnology (New York, N.Y.). 7: 53-60. PMID 15997365 DOI: 10.1007/s10126-004-0019-y |
1 |
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| 2005 |
Hastings S, Langella S, Oster S, Kurc T, Pan T, Catalyurek U, Janies D, Saltz J. G-based management of biomedical data using an XML-based distributed data management system Proceedings of the Acm Symposium On Applied Computing. 1: 105-109. DOI: 10.1145/1066677.1066707 |
1 |
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| 2002 |
Janies DA, Wheeler WC. Theory and practice of parallel direct optimization. Exs. 115-23. PMID 11924490 |
1 |
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| 2001 |
Janies DA, Wheeler WC. Efficiency of parallel direct optimization. Cladistics : the International Journal of the Willi Hennig Society. 17: S71-82. PMID 12240679 DOI: 10.1006/clad.2000.0160 |
1 |
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| 2001 |
Janies D. Phylogenetic relationships of extant echinoderm classes Canadian Journal of Zoology. 79: 1232-1250. DOI: 10.1139/cjz-79-7-1232 |
1 |
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| 2001 |
Giribet G, Wheeler W, Janies D. Introduction Cladistics. 17: S1-S2. DOI: 10.1006/clad.2000.0153 |
1 |
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| 2000 |
Phillips A, Janies D, Wheeler W. Multiple sequence alignment in phylogenetic analysis. Molecular Phylogenetics and Evolution. 16: 317-30. PMID 10991785 DOI: 10.1006/mpev.2000.0785 |
1 |
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| 2000 |
Blake DB, Janies DA. Evolution of starfishes: Morphology, molecules, development, and paleobiology. Introduction to the symposium American Zoologist. 40: 311-315. |
1 |
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| 1999 |
Janies D, DeSalle R. Development, evolution, and corroboration. The Anatomical Record. 257: 6-14. PMID 10333399 DOI: 10.1002/(SICI)1097-0185(19990215)257:1<6::AID-AR4>3.0.CO;2-I |
1 |
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| 1997 |
Mcedward LR, Janies DA. Relationships among development, ecology, and morphology in the evolution of echinoderm larvae and life cycles Biological Journal of the Linnean Society. 60: 381-400. DOI: 10.1006/bijl.1996.0107 |
1 |
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| 1993 |
McEdward LR, Janies DA. Life cycle evolution of asteroids: what is a larva? Biological Bulletin. 184: 255-268. |
1 |
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