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Tanja Slotte - Publications

Affiliations: 
2008-2010 Stockholm University, Stockholm, Stockholms län, Sweden 
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Gutiérrez-Valencia J, Fracassetti M, Berdan EL, Bunikis I, Soler L, Dainat J, Kutschera VE, Losvik A, Désamoré A, Hughes PW, Foroozani A, Laenen B, Pesquet E, Abdelaziz M, Pettersson OV, ... ... Slotte T, et al. Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level. Current Biology : Cb. PMID 36087578 DOI: 10.1016/j.cub.2022.08.042  0.478
2022 Berdan EL, Blanckaert A, Butlin RK, Flatt T, Slotte T, Wielstra B. Mutation accumulation opposes polymorphism: supergenes and the curious case of balanced lethals. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 377: 20210199. PMID 35694750 DOI: 10.1098/rstb.2021.0199  0.305
2022 Gutiérrez-Valencia J, Slotte T. Potato genomes pave the way to crop improvement. Nature. 606: 472-473. PMID 35676347 DOI: 10.1038/d41586-022-01419-2  0.339
2022 Gutiérrez-Valencia J, Fracassetti M, Horvath R, Laenen B, Désamore A, Drouzas AD, Friberg M, Kolář F, Slotte T. Genomic Signatures of Sexual Selection on Pollen-Expressed Genes in Arabis alpina. Molecular Biology and Evolution. 39. PMID 34878144 DOI: 10.1093/molbev/msab349  0.385
2021 Yang X, Slotte T, Dainat J, Hambäck PA. Genome assemblies of three closely related leaf beetle species (Galerucella spp.). G3 (Bethesda, Md.). 11. PMID 34849825 DOI: 10.1093/g3journal/jkab214  0.44
2021 Horvath R, Josephs EB, Pesquet E, Stinchcombe JR, Wright SI, Scofield D, Slotte T. Selection on accessible chromatin regions in Capsella grandiflora. Molecular Biology and Evolution. PMID 34498072 DOI: 10.1093/molbev/msab270  0.783
2021 Bohutínská M, Vlček J, Yair S, Laenen B, Konečná V, Fracassetti M, Slotte T, Kolář F. Genomic basis of parallel adaptation varies with divergence in and its relatives. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34001609 DOI: 10.1073/pnas.2022713118  0.528
2021 Bachmann JA, Tedder A, Fracassetti M, Steige KA, Lafon-Placette C, Köhler C, Slotte T. On the origin of the widespread self-compatible allotetraploid Capsella bursa-pastoris (Brassicaceae). Heredity. PMID 33875831 DOI: 10.1038/s41437-021-00434-9  0.439
2021 Gutiérrez-Valencia J, Hughes W, Berdan EL, Slotte T. The genomic architecture and evolutionary fates of supergenes. Genome Biology and Evolution. PMID 33739390 DOI: 10.1093/gbe/evab057  0.442
2020 Nowak MD, Birkeland S, Mandáková T, Choudhury RR, Guo X, Gustafsson ALS, Gizaw A, Schrøder-Nielsen A, Fracassetti M, Brysting AK, Rieseberg L, Slotte T, Parisod C, Lysak MA, Brochmann C. The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic. Molecular Ecology Resources. PMID 33058468 DOI: 10.1111/1755-0998.13280  0.398
2020 Dong Y, Majda M, Šimura J, Horvath R, Srivastava AK, Łangowski Ł, Eldridge T, Stacey N, Slotte T, Sadanandom A, Ljung K, Smith RS, Østergaard L. HEARTBREAK Controls Post-translational Modification of INDEHISCENT to Regulate Fruit Morphology in Capsella. Current Biology : Cb. PMID 32795439 DOI: 10.1016/J.Cub.2020.07.055  0.395
2020 Yang X, Fors L, Slotte T, Theopold U, Binzer-Panchal M, Wheat CW, Hambäck PA. Differential expression of immune genes between two closely related beetle species with different immunocompetence following attack by Asecodes parviclava. Genome Biology and Evolution. PMID 32282901 DOI: 10.1093/Gbe/Evaa075  0.356
2020 Mattila TM, Laenen B, Slotte T. Population Genomics of Transitions to Selfing in Brassicaceae Model Systems. Methods in Molecular Biology (Clifton, N.J.). 2090: 269-287. PMID 31975171 DOI: 10.1007/978-1-0716-0199-0_11  0.559
2019 Mattila TM, Laenen B, Horvath R, Hämälä T, Savolainen O, Slotte T. Impact of demography on linked selection in two outcrossing Brassicaceae species. Ecology and Evolution. 9: 9532-9545. PMID 31534673 DOI: 10.1002/Ece3.5463  0.552
2019 Bachmann JA, Tedder A, Laenen B, Fracassetti M, Désamoré A, Lafon-Placette C, Steige KA, Callot C, Marande W, Neuffer B, Bergès H, Köhler C, Castric V, Slotte T. Genetic basis and timing of a major mating system shift in Capsella. The New Phytologist. PMID 31254395 DOI: 10.1111/Nph.16035  0.434
2019 Koenig D, Hagmann J, Li R, Bemm F, Slotte T, Nueffer B, Wright SI, Weigel D. Long-term balancing selection drives evolution of immunity genes in . Elife. 8. PMID 30806624 DOI: 10.7554/Elife.43606  0.665
2019 Monnahan P, Kolář F, Baduel P, Sailer C, Koch J, Horvath R, Laenen B, Schmickl R, Paajanen P, Šrámková G, Bohutínská M, Arnold B, Weisman CM, Marhold K, Slotte T, et al. Pervasive population genomic consequences of genome duplication in Arabidopsis arenosa. Nature Ecology & Evolution. 3: 457-468. PMID 30804518 DOI: 10.1038/S41559-019-0807-4  0.603
2019 Horvath R, Laenen B, Takuno S, Slotte T. Single-cell expression noise and gene-body methylation in Arabidopsis thaliana. Heredity. PMID 30651589 DOI: 10.1038/S41437-018-0181-Z  0.395
2019 Koenig D, Hagmann J, Li R, Bemm F, Slotte T, Neuffer B, Wright SI, Weigel D. Author response: Long-term balancing selection drives evolution of immunity genes in Capsella Elife. DOI: 10.7554/Elife.43606.048  0.503
2018 Lafon-Placette C, Hatorangan MR, Steige KA, Cornille A, Lascoux M, Slotte T, Köhler C. Paternally expressed imprinted genes associate with hybridization barriers in Capsella. Nature Plants. 4: 352-357. PMID 29808019 DOI: 10.1038/S41477-018-0161-6  0.47
2018 Bachmann JA, Tedder A, Laenen B, Steige KA, Slotte T. Targeted Long-Read Sequencing of a Locus Under Long-Term Balancing Selection in. G3 (Bethesda, Md.). PMID 29476024 DOI: 10.1534/G3.117.300467  0.424
2018 Laenen B, Tedder A, Nowak MD, Toräng P, Wunder J, Wötzel S, Steige KA, Kourmpetis Y, Odong T, Drouzas AD, Bink MCAM, Ågren J, Coupland G, Slotte T. Demography and mating system shape the genome-wide impact of purifying selection in Arabis alpina. Proceedings of the National Academy of Sciences of the United States of America. PMID 29301967 DOI: 10.1073/Pnas.1707492115  0.613
2018 Plue J, Kimberley A, Slotte T. Interspecific variation in ploidy as a key plant trait outlining local extinction risks and community patterns in fragmented landscapes Functional Ecology. 32: 2095-2106. DOI: 10.1111/1365-2435.13127  0.387
2017 Horvath R, Slotte T. The role of small RNA-based epigenetic silencing for purifying selection on transposable elements in Capsella grandiflora. Genome Biology and Evolution. PMID 29036316 DOI: 10.1093/Gbe/Evx206  0.49
2017 Steige KA, Laenen B, Reimegård J, Scofield DG, Slotte T. Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora. Proceedings of the National Academy of Sciences of the United States of America. PMID 28096395 DOI: 10.1073/Pnas.1612561114  0.486
2016 Hatorangan MR, Laenen B, Steige K, Slotte T, Köhler C. Rapid Evolution of Genomic Imprinting in Two Species of the Brassicaceae. The Plant Cell. PMID 27465027 DOI: 10.1105/Tpc.16.00304  0.55
2016 Steige KA, Slotte T. Genomic legacies of the progenitors and the evolutionary consequences of allopolyploidy. Current Opinion in Plant Biology. 30: 88-93. PMID 26943938 DOI: 10.1016/J.Pbi.2016.02.006  0.559
2015 Steige KA, Reimegård J, Koenig D, Scofield DG, Slotte T. Cis-Regulatory Changes Associated with a Recent Mating System Shift and Floral Adaptation in Capsella. Molecular Biology and Evolution. 32: 2501-14. PMID 26318184 DOI: 10.1093/Molbev/Msv169  0.544
2015 Rebernig CA, Lafon-Placette C, Hatorangan MR, Slotte T, Köhler C. Non-reciprocal Interspecies Hybridization Barriers in the Capsella Genus Are Established in the Endosperm. Plos Genetics. 11: e1005295. PMID 26086217 DOI: 10.1371/Journal.Pgen.1005295  0.484
2015 Douglas GM, Gos G, Steige KA, Salcedo A, Holm K, Josephs EB, Arunkumar R, Ågren JA, Hazzouri KM, Wang W, Platts AE, Williamson RJ, Neuffer B, Lascoux M, Slotte T, et al. Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris. Proceedings of the National Academy of Sciences of the United States of America. 112: 2806-11. PMID 25691747 DOI: 10.1073/Pnas.1412277112  0.682
2014 Slotte T. The impact of linked selection on plant genomic variation. Briefings in Functional Genomics. 13: 268-75. PMID 24759704 DOI: 10.1093/Bfgp/Elu009  0.542
2013 Brandvain Y, Slotte T, Hazzouri KM, Wright SI, Coop G. Genomic identification of founding haplotypes reveals the history of the selfing species Capsella rubella. Plos Genetics. 9: e1003754. PMID 24068948 DOI: 10.1371/Journal.Pgen.1003754  0.819
2013 Slotte T, Hazzouri KM, Ã…gren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5. PMID 23749190 DOI: 10.1038/Ng.2669  0.762
2013 Wright SI, Kalisz S, Slotte T. Evolutionary consequences of self-fertilization in plants. Proceedings. Biological Sciences / the Royal Society. 280: 20130133. PMID 23595268 DOI: 10.1098/Rspb.2013.0133  0.596
2012 Gos G, Slotte T, Wright SI. Signatures of balancing selection are maintained at disease resistance loci following mating system evolution and a population bottleneck in the genus Capsella. Bmc Evolutionary Biology. 12: 152. PMID 22909344 DOI: 10.1186/1471-2148-12-152  0.802
2012 Slotte T, Hazzouri KM, Stern D, Andolfatto P, Wright SI. Genetic architecture and adaptive significance of the selfing syndrome in Capsella. Evolution; International Journal of Organic Evolution. 66: 1360-74. PMID 22519777 DOI: 10.1111/J.1558-5646.2011.01540.X  0.765
2012 St Onge KR, Foxe JP, Li J, Li H, Holm K, Corcoran P, Slotte T, Lascoux M, Wright SI. Coalescent-based analysis distinguishes between allo- and autopolyploid origin in Shepherd's Purse (Capsella bursa-pastoris). Molecular Biology and Evolution. 29: 1721-33. PMID 22319173 DOI: 10.1093/Molbev/Mss024  0.78
2011 Slotte T, Bataillon T, Hansen TT, St Onge K, Wright SI, Schierup MH. Genomic determinants of protein evolution and polymorphism in Arabidopsis. Genome Biology and Evolution. 3: 1210-9. PMID 21926095 DOI: 10.1093/Gbe/Evr094  0.676
2011 Qiu S, Zeng K, Slotte T, Wright S, Charlesworth D. Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species Genome Biology and Evolution. 3: 868-880. PMID 21856647 DOI: 10.1093/Gbe/Evr085  0.74
2011 St Onge KR, Källman T, Slotte T, Lascoux M, Palmé AE. Contrasting demographic history and population structure in Capsella rubella and Capsella grandiflora, two closely related species with different mating systems. Molecular Ecology. 20: 3306-20. PMID 21777317 DOI: 10.1111/J.1365-294X.2011.05189.X  0.497
2010 Slotte T, Foxe JP, Hazzouri KM, Wright SI. Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size. Molecular Biology and Evolution. 27: 1813-21. PMID 20194429 DOI: 10.1093/Molbev/Msq062  0.779
2009 Slotte T, Huang HR, Holm K, Ceplitis A, Onge KS, Chen J, Lagercrantz U, Lascoux M. Splicing variation at a FLOWERING LOCUS C homeolog is associated with flowering time variation in the tetraploid Capsella bursa-pastoris. Genetics. 183: 337-45. PMID 19581451 DOI: 10.1534/Genetics.109.103705  0.477
2009 Guo YL, Bechsgaard JS, Slotte T, Neuffer B, Lascoux M, Weigel D, Schierup MH. Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck. Proceedings of the National Academy of Sciences of the United States of America. 106: 5246-51. PMID 19307580 DOI: 10.1073/Pnas.0808012106  0.555
2009 Foxe JP, Slotte T, Stahl EA, Neuffer B, Hurka H, Wright SI. Recent speciation associated with the evolution of selfing in Capsella. Proceedings of the National Academy of Sciences of the United States of America. 106: 5241-5. PMID 19228944 DOI: 10.1073/Pnas.0807679106  0.797
2008 Slotte T, Huang H, Lascoux M, Ceplitis A. Polyploid speciation did not confer instant reproductive isolation in Capsella (Brassicaceae). Molecular Biology and Evolution. 25: 1472-81. PMID 18417485 DOI: 10.1093/Molbev/Msn092  0.498
2007 Slotte T, Holm K, McIntyre LM, Lagercrantz U, Lascoux M. Differential expression of genes important for adaptation in Capsella bursa-pastoris (Brassicaceae). Plant Physiology. 145: 160-73. PMID 17631524 DOI: 10.1104/Pp.107.102632  0.438
2006 Slotte T, Ceplitis A, Neuffer B, Hurka H, Lascoux M. Intrageneric phylogeny of Capsella (Brassicaceae) and the origin of the tetraploid C. bursa-pastoris based on chloroplast and nuclear DNA sequences. American Journal of Botany. 93: 1714-24. PMID 21642116 DOI: 10.3732/Ajb.93.11.1714  0.469
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