Gary Karpen - Related publications

Affiliations: 
University of California, Berkeley, Berkeley, CA 
Area:
Drosophila genetics, chromosome organization
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Nadarajan S, Altendorfer E, Saito TT, Martinez-Garcia M, Colaiácovo MP. HIM-17 regulates the position of recombination events and GSP-1/2 localization to establish short arm identity on bivalents in meiosis. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33883277 DOI: 10.1073/pnas.2016363118   
2021 Zenk F, Zhan Y, Kos P, Löser E, Atinbayeva N, Schächtle M, Tiana G, Giorgetti L, Iovino N. HP1 drives de novo 3D genome reorganization in early Drosophila embryos. Nature. PMID 33854237 DOI: 10.1038/s41586-021-03460-z   
2021 Liu Y, Liaw YM, Teo CH, Cápal P, Wada N, Fukui K, Doležel J, Ohmido N. Molecular organization of recombinant human-Arabidopsis chromosomes in hybrid cell lines. Scientific Reports. 11: 7160. PMID 33785802 DOI: 10.1038/s41598-021-86130-4   
2021 Maeshima K, Iida S, Tamura S. Physical Nature of Chromatin in the Nucleus. Cold Spring Harbor Perspectives in Biology. PMID 33820775 DOI: 10.1101/cshperspect.a040675   
2021 Barbosa ICO, Schneider CH, Goll LG, Feldberg E, Carvalho-Zilse GA. Chromosomal mapping of repetitive DNA in Cockerell, 1919 (Hymenoptera, Apidae, Meliponini). Comparative Cytogenetics. 15: 77-87. PMID 33815685 DOI: 10.3897/CompCytogen.v15i1.56430   
2021 Alpsoy A, Sood S, Dykhuizen EC. At the Crossroad of Gene Regulation and Genome Organization: Potential Roles for ATP-Dependent Chromatin Remodelers in the Regulation of CTCF-Mediated 3D Architecture. Biology. 10. PMID 33801596 DOI: 10.3390/biology10040272   
2021 Xing H, Wu Y, Zhang MQ, Chen Y. Deciphering hierarchical organization of topologically associated domains through change-point testing. Bmc Bioinformatics. 22: 183. PMID 33838653 DOI: 10.1186/s12859-021-04113-8   
2021 Smith OK, Limouse C, Fryer KA, Teran NA, Sundararajan K, Heald R, Straight AF. Identification and characterization of centromeric sequences in . Genome Research. PMID 33875480 DOI: 10.1101/gr.267781.120   
2021 Guan R, Lian T, Zhou BR, He E, Wu C, Singleton M, Bai Y. Structural and dynamic mechanisms of CBF3-guided centromeric nucleosome formation. Nature Communications. 12: 1763. PMID 33741944 DOI: 10.1038/s41467-021-21985-9   
2021 Zhu Y, Gujar AD, Wong CH, Tjong H, Ngan CY, Gong L, Chen YA, Kim H, Liu J, Li M, Mil-Homens A, Maurya R, Kuhlberg C, Sun F, Yi E, et al. Oncogenic extrachromosomal DNA functions as mobile enhancers to globally amplify chromosomal transcription. Cancer Cell. PMID 33836152 DOI: 10.1016/j.ccell.2021.03.006   
2021 Park J, Yeu SY, Paik S, Kim H, Choi SY, Lee J, Jang J, Lee S, Koh YI, Lee H. Loss of BubR1 acetylation provokes replication stress and leads to complex chromosomal rearrangements. The Febs Journal. PMID 33955658 DOI: 10.1111/febs.15912   
2021 Fortuny A, Chansard A, Caron P, Chevallier O, Leroy O, Renaud O, Polo SE. Imaging the response to DNA damage in heterochromatin domains reveals core principles of heterochromatin maintenance. Nature Communications. 12: 2428. PMID 33893291 DOI: 10.1038/s41467-021-22575-5   
2021 Talbert PB, Henikoff S. Histone variants at a glance. Journal of Cell Science. 134. PMID 33771851 DOI: 10.1242/jcs.244749   
2021 Krátká M, Šmerda J, Lojdová K, Bureš P, Zedek F. Holocentric Chromosomes Probably Do Not Prevent Centromere Drive in Cyperaceae. Frontiers in Plant Science. 12: 642661. PMID 33679859 DOI: 10.3389/fpls.2021.642661   
2021 Chen P, Li W, Li G. Structures and Functions of Chromatin Fibers. Annual Review of Biophysics. 50: 95-116. PMID 33957053 DOI: 10.1146/annurev-biophys-062920-063639   
2021 Arora UP, Charlebois C, Lawal RA, Dumont BL. Population and subspecies diversity at mouse centromere satellites. Bmc Genomics. 22: 279. PMID 33865332 DOI: 10.1186/s12864-021-07591-5   
2021 Cerase A, Young AN, Ruiz NB, Buness A, Sant GM, Arnold M, Di Giacomo M, Ascolani M, Kumar M, Hierholzer A, Trigiante G, Marzi SJ, Avner P. Chd8 regulates X chromosome inactivation in mouse through fine-tuning control of Xist expression. Communications Biology. 4: 485. PMID 33859315 DOI: 10.1038/s42003-021-01945-1   
2021 Oki M, Masai H. Regulation of HP1 protein by phosphorylation during transcriptional repression and cell cycle. Journal of Biochemistry. PMID 33772590 DOI: 10.1093/jb/mvab040   
2021 Nevil M, Duronio RJ. The awesome power of histone genetics. Molecular Cell. 81: 1593-1595. PMID 33861947 DOI: 10.1016/j.molcel.2021.03.023   
2021 Tomikawa J, Miyamoto K. Structural alteration of the nucleus for the reprogramming of gene expression. The Febs Journal. PMID 33891358 DOI: 10.1111/febs.15894   
2021 Li Y, Chen X, Lu C. The interplay between DNA and histone methylation: molecular mechanisms and disease implications. Embo Reports. e51803. PMID 33844406 DOI: 10.15252/embr.202051803   
2021 Fang L, Chen D, Zhang J, Li H, Bradford B, Jin C. Potential Functions of Histone H3.3 Lysine 56 Acetylation in Mammals. Epigenetics. PMID 33902396 DOI: 10.1080/15592294.2021.1922198   
2021 Soo VWC, Warnecke T. Slaying the last unicorn: discovery of histones in the microalga . Royal Society Open Science. 8: 202023. PMID 33972876 DOI: 10.1098/rsos.202023   
2021 Lu C, Coradin M, Janssen KA, Sidoli S, Garcia BA. Combinatorial Histone H3 Modifications Are Dynamically Altered in Distinct Cell Cycle Phases. Journal of the American Society For Mass Spectrometry. PMID 33818074 DOI: 10.1021/jasms.0c00451   
2021 Klein KN, Zhao PA, Lyu X, Sasaki T, Bartlett DA, Singh AM, Tasan I, Zhang M, Watts LP, Hiraga SI, Natsume T, Zhou X, Baslan T, Leung D, Kanemaki MT, et al. Replication timing maintains the global epigenetic state in human cells. Science (New York, N.Y.). 372: 371-378. PMID 33888635 DOI: 10.1126/science.aba5545   
2021 Cruz-Becerra G, Kadonaga JT. Reconstitution of Chromatin by Stepwise Salt Dialysis. Bio-Protocol. 11: e3977. PMID 33889671 DOI: 10.21769/BioProtoc.3977   
2021 Tran TQ, MacAlpine HK, Tripuraneni V, Mitra S, MacAlpine DM, Hartemink AJ. Linking the dynamics of chromatin occupancy and transcription with predictive models. Genome Research. PMID 33893157 DOI: 10.1101/gr.267237.120   
2021 Salim D, Bradford WD, Rubinstein B, Gerton JL. DNA replication, transcription, and H3K56 acetylation regulate copy number and stability at tandem repeats. G3 (Bethesda, Md.). PMID 33729510 DOI: 10.1093/g3journal/jkab082   
2021 Rossmann MP, Zon LI. 'Enhancing' red cell fate through epigenetic mechanisms. Current Opinion in Hematology. PMID 33741760 DOI: 10.1097/MOH.0000000000000654   
2021 Min J, Liu K. Structures of chromatin modulators in complex with nucleosome. Current Opinion in Chemical Biology. 63: 105-114. PMID 33823458 DOI: 10.1016/j.cbpa.2021.02.018   
2021 Nickels JF, Edwards AK, Charlton SJ, Mortensen AM, Hougaard SCL, Trusina A, Sneppen K, Thon G. Establishment of heterochromatin in domain-size-dependent bursts. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33827924 DOI: 10.1073/pnas.2022887118   
2021 Wang N, Liu J, Ricci WA, Gent JI, Dawe RK. Maize centromeric chromatin scales with changes in genome size. Genetics. 217. PMID 33857306 DOI: 10.1093/genetics/iyab020   
2021 Fesquet D, Llères D, Grimaud C, Viganò C, Méchali F, Boulon S, Coux O, Bonne-Andrea C, Baldin V. The 20S proteasome activator PA28γ controls the compaction of chromatin. Journal of Cell Science. 134. PMID 33526472 DOI: 10.1242/jcs.257717   
2021 Espiritu D, Gribkova AK, Gupta S, Shaytan AK, Panchenko AR. Molecular Mechanisms of Oncogenesis through the Lens of Nucleosomes and Histones. The Journal of Physical Chemistry. B. PMID 33769808 DOI: 10.1021/acs.jpcb.1c00694   
2021 Zhou JX, Du P, Liu ZW, Feng C, Cai XW, He XJ. FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin. The Plant Journal : For Cell and Molecular Biology. PMID 33942410 DOI: 10.1111/tpj.15302   
2021 Morrison EA, Baweja L, Poirier MG, Wereszczynski J, Musselman CA. Nucleosome composition regulates the histone H3 tail conformational ensemble and accessibility. Nucleic Acids Research. PMID 33856458 DOI: 10.1093/nar/gkab246   
2021 Marchione AD, Thompson Z, Kathrein KL. DNA methylation and histone modifications are essential for regulation of stem cell formation and differentiation in zebrafish development. Briefings in Functional Genomics. PMID 33782688 DOI: 10.1093/bfgp/elab022   
2021 Liscovitch-Brauer N, Montalbano A, Deng J, Méndez-Mancilla A, Wessels HH, Moss NG, Kung CY, Sookdeo A, Guo X, Geller E, Jaini S, Smibert P, Sanjana NE. Profiling the genetic determinants of chromatin accessibility with scalable single-cell CRISPR screens. Nature Biotechnology. PMID 33927415 DOI: 10.1038/s41587-021-00902-x   
2021 Ren W, Fan H, Grimm SA, Kim JJ, Li L, Guo Y, Petell CJ, Tan XF, Zhang ZM, Coan JP, Yin J, Kim DI, Gao L, Cai L, Khudaverdyan N, et al. DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation. Nature Communications. 12: 2490. PMID 33941775 DOI: 10.1038/s41467-021-22665-4   
2021 Shi J, Ma Y, Hua H, Liu Y, Li W, Yu H, Liu C. Dynamic Histone H3 Modifications Regulate Meiosis Initiation via Respiration. Frontiers in Cell and Developmental Biology. 9: 646214. PMID 33869198 DOI: 10.3389/fcell.2021.646214   
2021 Valencia-Sánchez MI, Abini-Agbomson S, Wang M, Lee R, Vasilyev N, Zhang J, De Ioannes P, La Scola B, Talbert P, Henikoff S, Nudler E, Erives A, Armache KJ. The structure of a virus-encoded nucleosome. Nature Structural & Molecular Biology. PMID 33927388 DOI: 10.1038/s41594-021-00585-7   
2021 Osakabe A, Jamge B, Axelsson E, Montgomery SA, Akimcheva S, Kuehn AL, Pisupati R, Lorković ZJ, Yelagandula R, Kakutani T, Berger F. The chromatin remodeler DDM1 prevents transposon mobility through deposition of histone variant H2A.W. Nature Cell Biology. 23: 391-400. PMID 33833428 DOI: 10.1038/s41556-021-00658-1   
2021 Kupp R, Ruff L, Terranova S, Nathan E, Ballereau S, Stark R, Sekhar Reddy Chilamakuri C, Hoffmann N, Wickham-Rahrmann K, Widdess M, Arabzade A, Zhao Y, Varadharajan S, Zheng T, Murugesan MK, et al. ZFTA-translocations constitute ependymoma chromatin remodeling and transcription factors. Cancer Discovery. PMID 33741711 DOI: 10.1158/2159-8290.CD-20-1052   
2021 Bragantini B, Charron C, Bourguet M, Paul A, Tiotiu D, Rothé B, Marty H, Terral G, Hessmann S, Decourty L, Chagot ME, Strub JM, Massenet S, Bertrand E, Quinternet M, et al. The box C/D snoRNP assembly factor Bcd1 interacts with the histone chaperone Rtt106 and controls its transcription dependent activity. Nature Communications. 12: 1859. PMID 33767140 DOI: 10.1038/s41467-021-22077-4   
2021 Sultana S, Zarreen F, Chakraborty S. Insights into the roles of histone chaperones in nucleosome assembly and disassembly in virus infection. Virus Research. 198395. PMID 33737155 DOI: 10.1016/j.virusres.2021.198395   
2021 Piunti A, Shilatifard A. The roles of Polycomb repressive complexes in mammalian development and cancer. Nature Reviews. Molecular Cell Biology. PMID 33723438 DOI: 10.1038/s41580-021-00341-1   
2021 de Groot C, Houston J, Davis B, Gerson-Gurwitz A, Monen J, Lara-Gonzalez P, Oegema K, Shiau AK, Desai A. The N-terminal Tail of CENP-A Interacts with KNL-2 and is Essential for Centromeric Chromatin Assembly. Molecular Biology of the Cell. mbcE20120798. PMID 33852350 DOI: 10.1091/mbc.E20-12-0798   
2021 Tripuraneni V, Memisoglu G, MacAlpine HK, Tran TQ, Zhu W, Hartemink AJ, Haber JE, MacAlpine DM. Local nucleosome dynamics and eviction following a double-strand break are reversible by NHEJ-mediated repair. Genome Research. PMID 33811083 DOI: 10.1101/gr.271155.120   
2021 Morita K, Hatanaka Y, Ihashi S, Asano M, Miyamoto K, Matsumoto K. Symmetrically dimethylated histone H3R2 promotes global transcription during minor zygotic genome activation in mouse pronuclei. Scientific Reports. 11: 10146. PMID 33980975 DOI: 10.1038/s41598-021-89334-w   
2021 Zhao Z, Fan R, Xu W, Kou Y, Wang Y, Ma X, Du Z. Single-cell dynamics of chromatin activity during cell lineage differentiation in Caenorhabditis elegans embryos. Molecular Systems Biology. 17: e10075. PMID 33900055 DOI: 10.15252/msb.202010075