Jeffrey M. Leiden - Related publications

University of Chicago, Chicago, IL 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Wu Y, Liang S, Zhu H, Zhu Y. Analysis of Immune-related Key Genes in Alzheimer's Disease. Bioengineered. PMID 34719321 DOI: 10.1080/21655979.2021.1999553   
2021 Singh NP. Gene regulation: Context is everything. Current Biology : Cb. 31: R1115-R1117. PMID 34637709 DOI: 10.1016/j.cub.2021.08.064   
2021 Jung HJ, Coleman R, Woodward OM, Welling PA. Doxycycline Changes the Transcriptome Profile of mIMCD3 Renal Epithelial Cells. Frontiers in Physiology. 12: 771691. PMID 34803745 DOI: 10.3389/fphys.2021.771691   
2021 Dai X, Tu X, Du B, Dong P, Sun S, Wang X, Sun J, Li G, Lu T, Zhong S, Li P. Chromatin and regulatory differentiation between bundle sheath and mesophyll cells in maize. The Plant Journal : For Cell and Molecular Biology. PMID 34783109 DOI: 10.1111/tpj.15586   
2021 Gross C, Le-Bel G, Desjardins P, Benhassine M, Germain L, Guérin SL. Contribution of the Transcription Factors Sp1/Sp3 and AP-1 to Gene Expression during Corneal Wound Healing of Tissue-Engineered Human Corneas. International Journal of Molecular Sciences. 22. PMID 34830308 DOI: 10.3390/ijms222212426   
2021 Chermuła B, Hutchings G, Kranc W, Józkowiak M, Jopek K, Stelmach B, Mozdziak P, Pawelczyk L, Piotrowska-Kempisty H, Spaczyński RZ, Kempisty B. Expression Profile of New Gene Markers and Signaling Pathways Involved in Immunological Processes in Human Cumulus-Oophorus Cells. Genes. 12. PMID 34573352 DOI: 10.3390/genes12091369   
2021 Rud D, Marjoram P, Siegmund K, Shibata D. Functional human genes typically exhibit epigenetic conservation. Plos One. 16: e0253250. PMID 34520456 DOI: 10.1371/journal.pone.0253250   
2021 Li H, Zhu B, Xu Z, Adams T, Kaminski N, Zhao H. A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data. Bmc Bioinformatics. 22: 524. PMID 34702190 DOI: 10.1186/s12859-021-04412-0   
2021 Cooper RM, Tonooka T, Didovyk A, Hasty J. Rapid, Affordable, and Uncomplicated Production of Bacterial Cell-free Lysate. Journal of Visualized Experiments : Jove. PMID 34779438 DOI: 10.3791/62753   
2021 Andrade Barbosa B, van Asten SD, Oh JW, Farina-Sarasqueta A, Verheij J, Dijk F, van Laarhoven HWM, Ylstra B, Garcia Vallejo JJ, van de Wiel MA, Kim Y. Bayesian log-normal deconvolution for enhanced in silico microdissection of bulk gene expression data. Nature Communications. 12: 6106. PMID 34671028 DOI: 10.1038/s41467-021-26328-2   
2021 Payankaulam S, Hickey SL, Arnosti DN. Cell cycle expression of polarity genes features Rb targeting of Vang. Cells & Development. 169: 203747. PMID 34583062 DOI: 10.1016/j.cdev.2021.203747   
2021 Akinyemi TS, Shao N, Lyu Z, Drake IJ, Liu Y, Whitman WB. Tuning Gene Expression by Phosphate in the Methanogenic Archaeon . Acs Synthetic Biology. PMID 34665610 DOI: 10.1021/acssynbio.1c00322   
2021 Choudhury SR, Dutta S, Bhaduri U, Rao MRS. LncRNA Hmrhl regulates expression of cancer related genes in chronic myelogenous leukemia through chromatin association. Nar Cancer. 3: zcab042. PMID 34734184 DOI: 10.1093/narcan/zcab042   
2021 Nething DB, Sukul A, Mishler-Elmore JW, Held MA. Posttranscriptional regulation of cellulose synthase genes by small RNAs derived from cellulose synthase antisense transcripts. Plant Direct. 5: e347. PMID 34557619 DOI: 10.1002/pld3.347   
2021 Singh M, Thakur M, Mishra M, Yadav M, Vibhuti R, Menon AM, Nagda G, Dwivedi VP, Dakal TC, Yadav APDV. Gene regulation of Intracellular adhesion Molecule-1 (ICAM-1): A molecule with multiple functions. Immunology Letters. PMID 34715236 DOI: 10.1016/j.imlet.2021.10.007   
2021 Stamos DB, Clubb LM, Mitra A, Chopp LB, Nie J, Ding Y, Das A, Venkataganesh H, Lee J, El-Khoury D, Li L, Bhandoola A, Bosselut R, Love PE. The histone demethylase Lsd1 regulates multiple repressive gene programs during T cell development. The Journal of Experimental Medicine. 218. PMID 34726730 DOI: 10.1084/jem.20202012   
2021 Sheng T, Ho SWT, Ooi WF, Xu C, Xing M, Padmanabhan N, Huang KK, Ma L, Ray M, Guo YA, Sim NL, Anene-Nzelu CG, Chang MM, Razavi-Mohseni M, Beer MA, et al. Integrative epigenomic and high-throughput functional enhancer profiling reveals determinants of enhancer heterogeneity in gastric cancer. Genome Medicine. 13: 158. PMID 34635154 DOI: 10.1186/s13073-021-00970-3   
2021 Herrmann JC, Beagrie RA, Hughes JR. Making connections: enhancers in cellular differentiation. Trends in Genetics : Tig. PMID 34753603 DOI: 10.1016/j.tig.2021.10.008   
2021 Li S, Yang P. Relationship between -regulated gene expression and alternative splicing in mouse cardiomyocytes and cardiac hypertrophy. Journal of Thoracic Disease. 13: 5517-5533. PMID 34659818 DOI: 10.21037/jtd-21-1222   
2021 Thomson E, Dawson R, H'ng CH, Adikusuma F, Piltz S, Thomas PQ. The Nestin neural enhancer is essential for normal levels of endogenous Nestin in neuroprogenitors but is not required for embryo development. Plos One. 16: e0258538. PMID 34739481 DOI: 10.1371/journal.pone.0258538   
2021 Santos-Navarro FN, Vignoni A, Boada Y, Picó J. RBS and Promoter Strengths Determine the Cell-Growth-Dependent Protein Mass Fractions and Their Optimal Synthesis Rates. Acs Synthetic Biology. PMID 34767708 DOI: 10.1021/acssynbio.1c00131   
2021 Yan F, Wang J, Wu X, Lu XT, Wang Y, Cheng W, Cui XP, Jiang F, Guo XS. Nitrosative stress induces downregulation of ribosomal protein genes via MYCT1 in vascular smooth muscle cells. European Review For Medical and Pharmacological Sciences. 25: 5653-5663. PMID 34604957 DOI: 10.26355/eurrev_202109_26784   
2021 Huang J, Sheng J, Wang D. Manifold learning analysis suggests strategies to align single-cell multimodal data of neuronal electrophysiology and transcriptomics. Communications Biology. 4: 1308. PMID 34799674 DOI: 10.1038/s42003-021-02807-6   
2021 Babuadze GG, Echanove J, Lamarre C, deLaVega MA, Fausther-Bovendo H, Racine T, M Gomez A, Azizi H, Wade M, Kozak R, Kobinger GP. A novel DNA platform designed for vaccine use with high transgene expression and immunogenicity. Vaccine. PMID 34774358 DOI: 10.1016/j.vaccine.2021.10.008   
2021 Jeon S, Kim MM. The down-regulation of melanogenesis via MITF and FOXO1 signaling pathways in SIRT1 knockout cells using CRISPR/Cas9 system. Journal of Biotechnology. PMID 34757047 DOI: 10.1016/j.jbiotec.2021.10.005   
2021 Collins JM, Lu R, Wang X, Zhu HJ, Wang D. Transcriptional regulation of carboxylesterase 1 () in human liver: role of the nuclear receptor (LXRα) and its splice isoforms. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 34697082 DOI: 10.1124/dmd.121.000649   
2021 Wang Y, Li Z, Yang G, Cai L, Yang F, Zhang Y, Zeng Y, Ma Q, Zeng F. The Study of Alternative Splicing Events in Human Induced Pluripotent Stem Cells From a Down's Syndrome Patient. Frontiers in Cell and Developmental Biology. 9: 661381. PMID 34660567 DOI: 10.3389/fcell.2021.661381   
2021 Lambert JT, Su-Feher L, Cichewicz K, Warren TL, Zdilar I, Wang Y, Lim KJ, Haigh JL, Morse SJ, Canales CP, Stradleigh TW, Castillo Palacios E, Haghani V, Moss SD, Parolini H, et al. Parallel functional testing identifies enhancers active in early postnatal mouse brain. Elife. 10. PMID 34605404 DOI: 10.7554/eLife.69479   
2021 Diao P, Sun H, Bao Z, Li W, Niu N, Li W, Wuriyanghan H. Expression of an Antiviral Gene from Soybean Is Regulated via Intron-Mediated Enhancement (IME). Viruses. 13. PMID 34696462 DOI: 10.3390/v13102032   
2021 Kumar S, Ruggles A, Logan S, Mazarakis A, Tyson T, Bates M, Grosse C, Reed D, Li Z, Grimwood J, Schmutz J, Saski C. Comparative Transcriptomics of Non-Embryogenic and Embryogenic Callus in Semi-Recalcitrant and Non-Recalcitrant Upland Cotton Lines. Plants (Basel, Switzerland). 10. PMID 34579308 DOI: 10.3390/plants10091775   
2021 Cha HJ, Uyan Ö, Kai Y, Liu T, Zhu Q, Tothova Z, Botten GA, Xu J, Yuan GC, Dekker J, Orkin SH. Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture. Nature Communications. 12: 6241. PMID 34716321 DOI: 10.1038/s41467-021-26574-4   
2021 Luo Y, Wang G, Ren T, Zhang T, Chen H, Li Y, Yin X, Zhang Z, Sun Y. Screening of Host Genes Regulated by ID1 and ID3 Proteins During Foot-and-Mouth Disease Virus Infection. Virus Research. 198597. PMID 34648884 DOI: 10.1016/j.virusres.2021.198597   
2021 Nguyen HT, Najih M, Martin LJ. The AP-1 family of transcription factors are important regulators of gene expression within Leydig cells. Endocrine. 74: 498-507. PMID 34599696 DOI: 10.1007/s12020-021-02888-7   
2021 Grose C, Putman Z, Esposito D. A review of alternative promoters for optimal recombinant protein expression in baculovirus-infected insect cells. Protein Expression and Purification. 186: 105924. PMID 34087362 DOI: 10.1016/j.pep.2021.105924   
2021 Liu Y, Gu Z, Cao H, Kaphle P, Lyu J, Zhang Y, Hu W, Chung SS, Dickerson KE, Xu J. Convergence of oncogenic cooperation at single-cell and single-gene levels drives leukemic transformation. Nature Communications. 12: 6323. PMID 34732703 DOI: 10.1038/s41467-021-26582-4   
2021 Quan X, Zhao C, Gao Z, Zhang Y, Zhao R, Wang J, Zhang Q. DDX10 and BYSL as the potential targets of chondrosarcoma and glioma. Medicine. 100: e27669. PMID 34797290 DOI: 10.1097/MD.0000000000027669   
2021 Chotewutmontri P, Barkan A. Ribosome profiling elucidates differential gene expression in bundle sheath and mesophyll cells in maize. Plant Physiology. 187: 59-72. PMID 34618144 DOI: 10.1093/plphys/kiab272   
2021 Youngblood HA, Parker E, Cai J, Perkumas K, Yu H, Sun J, Smith SB, Bollinger KE, Wiggs JL, Pasquale LR, Hauser MA, Stamer WD, Liu Y. Identification of Estrogen Signaling in a Prioritization Study of Intraocular Pressure-Associated Genes. International Journal of Molecular Sciences. 22. PMID 34638643 DOI: 10.3390/ijms221910288   
2021 Starks RR, Kaur H, Tuteja G. Mapping cis-regulatory elements in the midgestation mouse placenta. Scientific Reports. 11: 22331. PMID 34785717 DOI: 10.1038/s41598-021-01664-x   
2021 Nair VD, Vasoya M, Nair V, Smith GR, Pincas H, Ge Y, Douglas CM, Esser KA, Sealfon SC. Differential analysis of chromatin accessibility and gene expression profiles identifies cis-regulatory elements in rat adipose and muscle. Genomics. 113: 3827-3841. PMID 34547403 DOI: 10.1016/j.ygeno.2021.09.013   
2021 Zhang WL, Leng QY, Zheng JH, Hassan Nawaz A, Jiao ZH, Wang FJ, Zhang L. Cloning and expression of circular transcript of mouse growth hormone receptor gene. Yi Chuan = Hereditas. 43: 890-900. PMID 34702701 DOI: 10.16288/j.yczz.21-156   
2021 Ramos EI, Das K, Harrison AL, Garcia A, Gadad SS, Dhandayuthapani S. and Regulate a Distinct Set of Protein-Coding Genes in Epithelial Cells. Frontiers in Immunology. 12: 738431. PMID 34707609 DOI: 10.3389/fimmu.2021.738431   
2021 Bellido Molias F, Sim A, Leong KW, An O, Song Y, Ng VHE, Lim MWJ, Ying C, Teo JXJ, Göke J, Chen L. Antisense RNAs influence promoter usage of their counterpart sense genes in cancer. Cancer Research. PMID 34649947 DOI: 10.1158/0008-5472.CAN-21-1859   
2021 Liang W, Zou X, Li G, Zhou S, Tian C, Schaefke B. Systematic Analysis of Monoallelic Gene Expression and Chromatin Accessibility Across Multiple Tissues in Hybrid Mice. Frontiers in Cell and Developmental Biology. 9: 717555. PMID 34631706 DOI: 10.3389/fcell.2021.717555   
2021 Zhou H, Li J, Liu X, Wei X, He Z, Hu L, Wang J, Duan M, Xie G, Wang J, Wang L. The Divergent Roles of the Rice bcl-2 Associated Athanogene (BAG) Genes in Plant Development and Environmental Responses. Plants (Basel, Switzerland). 10. PMID 34685978 DOI: 10.3390/plants10102169   
2021 Fraser LCR, Dikdan RJ, Dey S, Singh A, Tyagi S. Reduction in gene expression noise by targeted increase in accessibility at gene loci. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34625470 DOI: 10.1073/pnas.2018640118   
2021 Osma-Garcia IC, Capitan-Sobrino D, Mouysset M, Bell SE, Lebeurrier M, Turner M, Diaz-Muñoz MD. The RNA-binding protein HuR is required for maintenance of the germinal centre response. Nature Communications. 12: 6556. PMID 34772950 DOI: 10.1038/s41467-021-26908-2   
2021 Huang W, Wu Z, Tian H, Li X, Zhang Y. CALMODULIN-BINDING PROTEIN 60b plays dual roles in plant immunity. Plant Communications. 2: 100213. PMID 34778745 DOI: 10.1016/j.xplc.2021.100213   
2021 Sun J, Fahmi NA, Nassereddeen H, Cheng S, Martinez I, Fan D, Yong J, Zhang W. Computational Methods to Study Human Transcript Variants in COVID-19 Infected Lung Cancer Cells. International Journal of Molecular Sciences. 22. PMID 34575842 DOI: 10.3390/ijms22189684   
2021 Wang C, Wang R, Yang H, Wang Y, Zhang Z. Gene cloning and transcriptional regulation of the alkaline and acid phosphatase genes in Scylla paramamosain. Gene. 146057. PMID 34732367 DOI: 10.1016/j.gene.2021.146057