Jeffrey M. Leiden - Related publications

Affiliations: 
University of Chicago, Chicago, IL 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Li X, Lei Y, Yu Y, Zhang Y, Zhang W, Shen H, Tao C, Wu F, Huang S, Shao H. Discovery and characterization of a novel splice variant of the p53 tumor suppressor gene in a human T cell leukemia cellline. International Journal of Clinical and Experimental Pathology. 13: 1121-1135. PMID 32509087   
2020 Ochiai H, Hayashi T, Umeda M, Yoshimura M, Harada A, Shimizu Y, Nakano K, Saitoh N, Liu Z, Yamamoto T, Okamura T, Ohkawa Y, Kimura H, Nikaido I. Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells. Science Advances. 6: eaaz6699. PMID 32596448 DOI: 10.1126/sciadv.aaz6699   
2020 Geigges M, Gubser PM, Unterstab G, Lecoultre Y, Paro R, Hess C. Reference Genes for Expression Studies in Human CD8 Naïve and Effector Memory T Cells under Resting and Activating Conditions. Scientific Reports. 10: 9411. PMID 32523060 DOI: 10.1038/s41598-020-66367-1   
2020 Radens CM, Blake D, Jewell P, Barash Y, Lynch KW. Meta-Analysis of Transcriptomic Variation in T cell Populations Reveals both Variable and Consistent Signatures of Gene Expression and Splicing. Rna (New York, N.Y.). PMID 32554554 DOI: 10.1261/rna.075929.120   
2020 Puttabyatappa M, Guo X, Dou J, Dumesic D, Bakulski KM, Padmanabhan V. Developmental Programming: Sheep Granulosa and Theca Cell-Specific Transcriptional Regulation by Prenatal Testosterone. Endocrinology. PMID 32516392 DOI: 10.1210/endocr/bqaa094   
2020 Zhang X, Chen M, Liu X, Zhang L, Ding X, Guo Y, Li X, Guo H. A novel lncRNA, lnc403, involved in bovine skeletal muscle moygenesis by mediating KRAS/Myf6. Gene. 144706. PMID 32387386 DOI: 10.1016/j.gene.2020.144706   
2020 Tucker NR, Chaffin M, Fleming SJ, Hall AW, Parsons VA, Bedi KC, Akkad AD, Herndon CN, Arduini A, Papangeli I, Roselli C, Aguet F, Choi SH, Ardlie KG, Babadi M, et al. Transcriptional and Cellular Diversity of the Human Heart. Circulation. PMID 32403949 DOI: 10.1161/CIRCULATIONAHA.119.045401   
2020 Tucker NR, Chaffin M, Fleming SJ, Hall AW, Parsons VA, Bedi KC, Akkad AD, Herndon CN, Arduini A, Papangeli I, Roselli C, Aguet F, Choi SH, Ardlie KG, Babadi M, et al. Transcriptional and Cellular Diversity of the Human Heart. Circulation. PMID 32403949 DOI: 10.1161/CIRCULATIONAHA.119.045401   
2020 Liu M, Zhu Y, Xing F, Liu S, Xia Y, Jiang Q, Qin J. The polycomb group protein PCGF6 mediates germline gene silencing by recruiting histone-modifying proteins to target gene promoters. The Journal of Biological Chemistry. PMID 32482889 DOI: 10.1074/jbc.RA119.012121   
2020 Gurdon JB, Javed K, Vodnala M, Garrett N. Long-term association of a transcription factor with its chromatin binding site can stabilize gene expression and cell fate commitment. Proceedings of the National Academy of Sciences of the United States of America. 117: 15075-15084. PMID 32532919 DOI: 10.1073/pnas.2000467117   
2020 Beer MA, Shigaki D, Huangfu D. Enhancer Predictions and Genome-Wide Regulatory Circuits. Annual Review of Genomics and Human Genetics. PMID 32443951 DOI: 10.1146/annurev-genom-121719-010946   
2020 Myung SH, Park J, Han JH, Kim TH. Development of the mammalian expression vector system that can be induced by IPTG and/or lactose. Journal of Microbiology and Biotechnology. PMID 32423185 DOI: 10.4014/jmb.2003.03030   
2020 Linden J, Schnepf D, Wischnewski M, Ye L, Gawron J, Ohnemus A, Friedrich C, Gasteiger G, Staeheli P. Interferon-λ Receptor Expression: Novel Reporter Mouse Reveals Within- and Cross-Tissue Heterogeneity. Journal of Interferon & Cytokine Research : the Official Journal of the International Society For Interferon and Cytokine Research. PMID 32364818 DOI: 10.1089/jir.2019.0265   
2020 Sungnak W, Huang N, Bécavin C, Berg M, Queen R, Litvinukova M, Talavera-López C, Maatz H, Reichart D, Sampaziotis F, Worlock KB, Yoshida M, Barnes JL, . SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes. Nature Medicine. 26: 681-687. PMID 32327758 DOI: 10.1038/s41591-020-0868-6   
2020 Chen Y, Liu J, Zhi S, Zheng Q, Ma W, Huang J, Liu Y, Liu D, Liang P, Songyang Z. Repurposing type I-F CRISPR-Cas system as a transcriptional activation tool in human cells. Nature Communications. 11: 3136. PMID 32561716 DOI: 10.1038/s41467-020-16880-8   
2020 Bravo González-Blas C, Quan XJ, Duran-Romaña R, Taskiran II, Koldere D, Davie K, Christiaens V, Makhzami S, Hulselmans G, de Waegeneer M, Mauduit D, Poovathingal S, Aibar S, Aerts S. Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics. Molecular Systems Biology. 16: e9438. PMID 32431014 DOI: 10.15252/msb.20209438   
2020 Famà R, Borroni E, Merlin S, Airoldi C, Pignani S, Cucci A, Corà D, Bruscaggin V, Scardellato S, Faletti S, Pelicci G, Pinotti M, Walker GE, Follenzi A. Deciphering the Ets-1/2-mediated transcriptional regulation of F8 gene identifies a minimal F8 promoter for hemophilia A gene therapy. Haematologica. PMID 32467137 DOI: 10.3324/haematol.2019.239202   
2020 Callaghan JD, Stella NA, Lehner KM, Treat BR, Brothers KM, St Leger AJ, Shanks RMQ. Generation of Xylose-inducible promoter tools for species and their use in implicating a role for the Type II secretion system protein XcpQ in inhibition of corneal epithelial wound closure. Applied and Environmental Microbiology. PMID 32414795 DOI: 10.1128/AEM.00250-20   
2020 Wang J, Wang Q, Chen Y, Wang L, Zhao A, Sha Z. Cloning, expression profile of the complement component C9 gene and influence of the recombinant C9 protein on peripheral mononuclear leukocytes transcriptome in half-smooth tongue sole (Cynoglossus semilaevis). Fish & Shellfish Immunology. PMID 32464273 DOI: 10.1016/j.fsi.2020.05.042   
2020 Jaiswal PK, Aljebali L, Gaumond MH, Oh CD, Yasuda H, Moffatt P. Biochemical characteristics of the chondrocyte-enriched SNORC protein and its transcriptional regulation by SOX9. Scientific Reports. 10: 7790. PMID 32385306 DOI: 10.1038/s41598-020-64640-x   
2020 Mora A, Bosch R, Cuellar-García C, Blanco L, Sierra J, Nomdedeu J, Moreno C. Gene expression workflow to analyze residual leukemic cells in Chronic Lymphocytic Leukemia. International Journal of Laboratory Hematology. PMID 32333638 DOI: 10.1111/ijlh.13215   
2020 Ng AP, Coughlan HD, Hediyeh-Zadeh S, Behrens K, Johanson TM, Low MSY, Bell CC, Gilan O, Chan YC, Kueh AJ, Boudier T, Feltham R, Gabrielyan A, DiRago L, Hyland CD, et al. An Erg-driven transcriptional program controls B cell lymphopoiesis. Nature Communications. 11: 3013. PMID 32541654 DOI: 10.1038/s41467-020-16828-y   
2020 Nebeluk N, Foster TP. Design, Validation and Evaluation of a SYBR Green-based Quantitative PCR Array for Comprehensive Analysis of Adenovirus Type 5 Transcriptional Patterns. Journal of Virological Methods. 113880. PMID 32413477 DOI: 10.1016/j.jviromet.2020.113880   
2020 Watanabe T, Nishimura M, Izumi T, Kuriyama K, Iwaisako Y, Hosokawa K, Takaori-Kondo A, Fujimuro M. Kaposi's Sarcoma-Associated Herpesvirus ORF66 Is Essential for Late Gene Expression and Virus Production via Interaction with ORF34. Journal of Virology. 94. PMID 31694948 DOI: 10.1128/JVI.01300-19   
2020 Liu W, Li N, Zhang M, Liu Y, Sun J, Zhang S, Peng S, Hua J. Eif2s3y regulates the proliferation of spermatogonial stem cells via Wnt6/-catenin signaling pathway. Biochimica Et Biophysica Acta. Molecular Cell Research. 118790. PMID 32621839 DOI: 10.1016/j.bbamcr.2020.118790   
2020 Das D, Das A, Sahu M, Mishra SS, Khan S, Bejugam PR, Rout PK, Das A, Bano S, Mishra GP, Raghav SK, Dixit A, Panda AC. Identification and Characterization of Circular Intronic RNAs Derived from Insulin Gene. International Journal of Molecular Sciences. 21. PMID 32560282 DOI: 10.3390/ijms21124302   
2020 Borriello G, Russo V, Paradiso R, Riccardi MG, Criscuolo D, Verde G, Marasco R, Pedone PV, Galiero G, Baglivo I. Different Impacts of MucR Binding to the and Promoters on Gene Expression in 2308. Biomolecules. 10. PMID 32438765 DOI: 10.3390/biom10050788   
2020 Carnesecchi J, Lohmann I. Closing the gap: a roadmap to single-cell regulatory genomics. Molecular Systems Biology. 16: e9497. PMID 32430985 DOI: 10.15252/msb.20209497   
2020 Voigt AP, Whitmore SS, Mulfaul K, Chirco KR, Giacalone JC, Flamme-Wiese MJ, Stockman A, Stone EM, Tucker BA, Scheetz TE, Mullins RF. Bulk and single-cell gene expression analyses reveal aging human choriocapillaris has pro-inflammatory phenotype. Microvascular Research. 104031. PMID 32531351 DOI: 10.1016/j.mvr.2020.104031   
2020 Cai H, Li M, Jian W, Song C, Huang Y, Lan X, Lei C, Chen H. A novel lncRNA BADLNCR1 inhibits bovine adipogenesis by repressing GLRX5 expression. Journal of Cellular and Molecular Medicine. PMID 32449295 DOI: 10.1111/jcmm.15181   
2020 Lee Y, Kwak JM, Lee JS. Endogenous p21-Dependent Transgene Control for CHO Cell Engineering. Acs Synthetic Biology. PMID 32539343 DOI: 10.1021/acssynbio.9b00526   
2020 Li H, Chen X, Zeng W, Zhou W, Zhou Q, Wang Z, Jiang W, Xie B, Sun LQ. Radiation-enhanced expression of CCL22 in nasopharyngeal carcinoma is associated with CCR4 CD8 T cell recruitment. International Journal of Radiation Oncology, Biology, Physics. PMID 32428547 DOI: 10.1016/j.ijrobp.2020.05.001   
2020 Zhu Y, Li J, Li Q, Pang Y. Characterization of lamprey (Lampetra japonica) tnfr10-like gene: A potential granulocyte marker molecule and its immune functions. Molecular Immunology. 124: 25-34. PMID 32497752 DOI: 10.1016/j.molimm.2020.05.015   
2020 Li S, Zhao W, Sun M. An Analysis Regarding the Association Between the Gene and Gastric Carcinogenesis. Frontiers in Genetics. 11: 620. PMID 32612640 DOI: 10.3389/fgene.2020.00620   
2020 Ibrahim S, Harris-Kawano A, Haider I, Mirmira RG, Sims EK, Anderson RM. A Novel Cre-Enabled Tetracycline Inducible transgenic system for tissue specific cytokine expression in the zebrafish: CETI-PIC3. Disease Models & Mechanisms. PMID 32457041 DOI: 10.1242/dmm.042556   
2020 Chen L, Li B, Hu S, Qiao R, Sun C, Yang D. A fas apoptotic inhibitory molecule from Ruditapes philippinarum: Investigation on molecular characterization and functional analysis. Fish & Shellfish Immunology. PMID 32470512 DOI: 10.1016/j.fsi.2020.05.058   
2020 Oudelaar AM, Beagrie RA, Gosden M, de Ornellas S, Georgiades E, Kerry J, Hidalgo D, Carrelha J, Shivalingam A, El-Sagheer AH, Telenius JM, Brown T, Buckle VJ, Socolovsky M, Higgs DR, et al. Dynamics of the 4D genome during in vivo lineage specification and differentiation. Nature Communications. 11: 2722. PMID 32483172 DOI: 10.1038/s41467-020-16598-7   
2020 Valipour E, Nooshabadi VT, Mahdipour S, Shabani S, Farhady-Tooli L, Majidian S, Noroozi Z, Mansouri K, Motevaseli E, Modarressi MH. Anti-angiogenic effects of testis-specific gene antigen 10 on primary endothelial cells. Gene. 144856. PMID 32512160 DOI: 10.1016/j.gene.2020.144856   
2020 Sasaki R, Kanda T, Fujisawa M, Matsumoto N, Masuzaki R, Ogawa M, Matsuoka S, Kuroda K, Moriyama M. Different Mechanisms of Action of Regorafenib and Lenvatinib on Toll-Like Receptor-Signaling Pathways in Human Hepatoma Cell Lines. International Journal of Molecular Sciences. 21. PMID 32397371 DOI: 10.3390/ijms21093349   
2020 Chung Nien Chin S, O'Connor L, Scurr M, Busada JT, Graham AN, Alipour Talesh G, Tran CP, Sarkar S, Minamoto T, Giraud AS, Cidlowski JA, Sutton P, Menheniott TR. Coordinate expression loss of GKN1 and GKN2 in gastric cancer via impairment of a glucocorticoid-responsive enhancer. American Journal of Physiology. Gastrointestinal and Liver Physiology. PMID 32538140 DOI: 10.1152/ajpgi.00019.2020   
2020 Nasrallah R, Imianowski CJ, Bossini-Castillo L, Grant FM, Dogan M, Placek L, Kozhaya L, Kuo P, Sadiyah F, Whiteside SK, Mumbach MR, Glinos D, Vardaka P, Whyte CE, Lozano T, et al. A distal enhancer at risk locus 11q13.5 promotes suppression of colitis by T cells. Nature. PMID 32499651 DOI: 10.1038/s41586-020-2296-7   
2020 Jaeger MG, Schwalb B, Mackowiak SD, Velychko T, Hanzl A, Imrichova H, Brand M, Agerer B, Chorn S, Nabet B, Ferguson FM, Müller AC, Bergthaler A, Gray NS, Bradner JE, et al. Selective Mediator dependence of cell-type-specifying transcription. Nature Genetics. PMID 32483291 DOI: 10.1038/s41588-020-0635-0   
2020 Guan G, Fang M, Wong MK, Ho VWS, An X, Tang C, Huang X, Zhao Z. Multilevel regulation of muscle-specific transcription factor hlh-1 during Caenorhabditis elegans embryogenesis. Development Genes and Evolution. PMID 32556563 DOI: 10.1007/s00427-020-00662-9   
2020 Yang J, Xu D, Yu W, Hao R, Wei J. Regulation of aureofuscin production by the PAS-LuxR family regulator AurJ3M. Enzyme and Microbial Technology. 137: 109532. PMID 32423669 DOI: 10.1016/j.enzmictec.2020.109532   
2020 Li X, Ren Z, Xiong C, Geng J, Li Y, Liu C, Ren C, Liu H. Minichromosome maintenance 6 complex component identified by bioinformatics analysis and experimental validation in esophageal squamous cell carcinoma. Oncology Reports. PMID 32583000 DOI: 10.3892/or.2020.7658   
2020 Kim SM, Cho SY, Kim MW, Roh SR, Shin HS, Suh YH, Geum D, Lee MA. Genome-Wide Analysis Identifies NURR1-Controlled Network of New Synapse Formation and Cell Cycle Arrest in Human Neural Stem Cells. Molecules and Cells. PMID 32522891 DOI: 10.14348/molcells.2020.0071   
2020 Vaid S, Huttner WB. Transcriptional Regulators and Human-Specific/Primate-Specific Genes in Neocortical Neurogenesis. International Journal of Molecular Sciences. 21. PMID 32610533 DOI: 10.3390/ijms21134614   
2020 Xia B, Zhao D, Wang G, Zhang M, Lv J, Tomoiaga AS, Li Y, Wang X, Meng S, Cooke JP, Cao Q, Zhang L, Chen K. Machine learning uncovers cell identity regulator by histone code. Nature Communications. 11: 2696. PMID 32483223 DOI: 10.1038/s41467-020-16539-4   
2020 Khara P, Biswas S, Biswas I. Induction of expression by cell-wall targeting antibiotics in . Microbiology (Reading, England). PMID 32416745 DOI: 10.1099/mic.0.000920   
2020 Steinauer N, Guo C, Zhang J. The transcriptional corepressor CBFA2T3 inhibits all-trans retinoic acid-induced myeloid gene expression and differentiation in acute myeloid leukemia. The Journal of Biological Chemistry. PMID 32434928 DOI: 10.1074/jbc.RA120.013042