Raju Tomer - Publications

2016- Biological Sciences Columbia University, New York, NY 
Neuroscience, Microscopy

26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Shekar S, Jayant K, Rabadan MA, Tomer R, Yuste R, Shepard KL. A miniaturized multi-clamp CMOS amplifier for intracellular neural recording. Nature Electronics. 2: 343-350. PMID 31850397 DOI: 10.1038/s41928-019-0285-3  1
2018 Tanaka N, Kanatani S, Tomer R, Sahlgren C, Kronqvist P, Kaczynska D, Louhivuori L, Kis L, Lindh C, Mitura P, Stepulak A, Corvigno S, Hartman J, Micke P, Mezheyeuski A, et al. Publisher Correction: Whole-tissue biopsy phenotyping of three-dimensional tumours reveals patterns of cancer heterogeneity. Nature Biomedical Engineering. 2: 48. PMID 31015657 DOI: 10.1038/S41551-017-0162-1  1
2018 Wei Q, Krolewski DM, Moore S, Kumar V, Li F, Martin B, Tomer R, Murphy GG, Deisseroth K, Watson SJ, Akil H. Uneven balance of power between hypothalamic peptidergic neurons in the control of feeding. Proceedings of the National Academy of Sciences of the United States of America. PMID 30224492 DOI: 10.1073/Pnas.1802237115  1
2018 Migliori B, Datta MS, Dupre C, Apak MC, Asano S, Gao R, Boyden ES, Hermanson O, Yuste R, Tomer R. Light sheet theta microscopy for rapid high-resolution imaging of large biological samples. Bmc Biology. 16: 57. PMID 29843722 DOI: 10.1186/S12915-018-0521-8  0.01
2017 Tanaka N, Kanatani S, Tomer R, Sahlgren C, Kronqvist P, Kaczynska D, Louhivuori L, Kis L, Lindh C, Mitura P, Stepulak A, Corvigno S, Hartman J, Micke P, Mezheyeuski A, et al. Whole-tissue biopsy phenotyping of three-dimensional tumours reveals patterns of cancer heterogeneity. Nature Biomedical Engineering. 1: 796-806. PMID 31015588 DOI: 10.1038/S41551-017-0139-0  1
2017 Fürth D, Vaissière T, Tzortzi O, Xuan Y, Märtin A, Lazaridis I, Spigolon G, Fisone G, Tomer R, Deisseroth K, Carlén M, Miller CA, Rumbaugh G, Meletis K. Publisher Correction: An interactive framework for whole-brain maps at cellular resolution. Nature Neuroscience. PMID 29255166 DOI: 10.1038/S41593-017-0058-0  1
2017 Krolewski DM, Kumar V, Martin B, Tomer R, Deisseroth K, Myers RM, Schatzberg AF, Lee FS, Barchas JD, Bunney WE, Akil H, Watson SJ. Quantitative validation of immunofluorescence and lectin staining using reduced CLARITY acrylamide formulations. Brain Structure & Function. PMID 29243106 DOI: 10.1007/S00429-017-1583-Z  1
2017 Feng Y, Cui P, Lu X, Hsueh B, Möller Billig F, Zarnescu Yanez L, Tomer R, Boerboom D, Carmeliet P, Deisseroth K, Hsueh AJ. CLARITY reveals dynamics of ovarian follicular architecture and vasculature in three-dimensions. Scientific Reports. 7: 44810. PMID 28333125 DOI: 10.1038/Srep44810  1
2016 Romanov RA, Zeisel A, Bakker J, Girach F, Hellysaz A, Tomer R, Alpár A, Mulder J, Clotman F, Keimpema E, Hsueh B, Crow AK, Martens H, Schwindling C, Calvigioni D, et al. Molecular interrogation of hypothalamic organization reveals distinct dopamine neuronal subtypes. Nature Neuroscience. PMID 27991900 DOI: 10.1038/Nn.4462  1
2015 Tomer R, Lovett-Barron M, Kauvar I, Andalman A, Burns VM, Sankaran S, Grosenick L, Broxton M, Yang S, Deisseroth K. SPED Light Sheet Microscopy: Fast Mapping of Biological System Structure and Function. Cell. 163: 1796-806. PMID 26687363 DOI: 10.1016/J.Cell.2015.11.061  1
2015 Lerner TN, Shilyansky C, Davidson TJ, Evans KE, Beier KT, Zalocusky KA, Crow AK, Malenka RC, Luo L, Tomer R, Deisseroth K. Intact-Brain Analyses Reveal Distinct Information Carried by SNc Dopamine Subcircuits. Cell. 162: 635-47. PMID 26232229 DOI: 10.1016/J.Cell.2015.07.014  1
2014 Pettit JB, Tomer R, Achim K, Richardson S, Azizi L, Marioni J. Identifying cell types from spatially referenced single-cell expression datasets. Plos Computational Biology. 10: e1003824. PMID 25254363 DOI: 10.1371/Journal.Pcbi.1003824  1
2014 Lauri A, Brunet T, Handberg-Thorsager M, Fischer AH, Simakov O, Steinmetz PR, Tomer R, Keller PJ, Arendt D. Development of the annelid axochord: insights into notochord evolution. Science (New York, N.Y.). 345: 1365-8. PMID 25214631 DOI: 10.1126/Science.1253396  1
2014 Tomer R, Ye L, Hsueh B, Deisseroth K. Advanced CLARITY for rapid and high-resolution imaging of intact tissues. Nature Protocols. 9: 1682-97. PMID 24945384 DOI: 10.1038/Nprot.2014.123  1
2014 Zhang MD, Tortoriello G, Hsueh B, Tomer R, Ye L, Mitsios N, Borgius L, Grant G, Kiehn O, Watanabe M, Uhlén M, Mulder J, Deisseroth K, Harkany T, Hökfelt TG. Neuronal calcium-binding proteins 1/2 localize to dorsal root ganglia and excitatory spinal neurons and are regulated by nerve injury. Proceedings of the National Academy of Sciences of the United States of America. 111: E1149-58. PMID 24616509 DOI: 10.1073/Pnas.1402318111  1
2014 Marlow H, Tosches MA, Tomer R, Steinmetz PR, Lauri A, Larsson T, Arendt D. Larval body patterning and apical organs are conserved in animal evolution. Bmc Biology. 12: 7. PMID 24476105 DOI: 10.1186/1741-7007-12-7  1
2013 Tomer R, Khairy K, Keller PJ. Light sheet microscopy in cell biology. Methods in Molecular Biology (Clifton, N.J.). 931: 123-37. PMID 23027001 DOI: 10.1007/978-1-62703-056-4_7  1
2012 Tomer R, Khairy K, Amat F, Keller PJ. Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy. Nature Methods. 9: 755-63. PMID 22660741 DOI: 10.1038/Nmeth.2062  1
2011 Kanodia JS, Kim Y, Tomer R, Khan Z, Chung K, Storey JD, Lu H, Keller PJ, Shvartsman SY. A computational statistics approach for estimating the spatial range of morphogen gradients. Development (Cambridge, England). 138: 4867-74. PMID 22007136 DOI: 10.1242/Dev.071571  1
2011 Tomer R, Khairy K, Keller PJ. Shedding light on the system: studying embryonic development with light sheet microscopy. Current Opinion in Genetics & Development. 21: 558-65. PMID 21862314 DOI: 10.1016/J.Gde.2011.07.003  1
2010 Tomer R, Denes AS, Tessmar-Raible K, Arendt D. Profiling by image registration reveals common origin of annelid mushroom bodies and vertebrate pallium. Cell. 142: 800-9. PMID 20813265 DOI: 10.1016/J.Cell.2010.07.043  1
2010 Christodoulou F, Raible F, Tomer R, Simakov O, Trachana K, Klaus S, Snyman H, Hannon GJ, Bork P, Arendt D. Ancient animal microRNAs and the evolution of tissue identity. Nature. 463: 1084-8. PMID 20118916 DOI: 10.1038/Nature08744  1
2007 Pfeiffer V, Sittka A, Tomer R, Tedin K, Brinkmann V, Vogel J. A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. Molecular Microbiology. 66: 1174-91. PMID 17971080 DOI: 10.1111/J.1365-2958.2007.05991.X  1
2006 Dutta S, Singhal P, Agrawal P, Tomer R, Kritee K, Khurana E, Jayaram B. A physicochemical model for analyzing DNA sequences. Journal of Chemical Information and Modeling. 46: 78-85. PMID 16426042 DOI: 10.1021/Ci050119X  1
2004 Laux H, Tomer R, Mader MT, Smida J, Budczies J, Kappler R, Hahn H, Blöchinger M, Schnitzbauer U, Eckardt-Schupp F, Höfler H, Becker KF. Tumor-associated E-cadherin mutations do not induce Wnt target gene expression, but affect E-cadherin repressors. Laboratory Investigation; a Journal of Technical Methods and Pathology. 84: 1372-86. PMID 15311212 DOI: 10.1038/Labinvest.3700158  1
2004 Specht K, Haralambieva E, Bink K, Kremer M, Mandl-Weber S, Koch I, Tomer R, Hofler H, Schuuring E, Kluin PM, Fend F, Quintanilla-Martinez L. Different mechanisms of cyclin D1 overexpression in multiple myeloma revealed by fluorescence in situ hybridization and quantitative analysis of mRNA levels. Blood. 104: 1120-6. PMID 15090460 DOI: 10.1182/Blood-2003-11-3837  1
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