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Christopher D. Herring, Ph.D. - Publications

Affiliations: 
University of Wisconsin, Madison, Madison, WI 
Area:
Genomics, gene regulation, bacteria, bioinformatics, DNA chips, genome engineering
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13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2008 Herring CD. Introduction of conditional lethal amber mutations in Escherichia coli. Methods in Molecular Biology (Clifton, N.J.). 416: 323-34. PMID 18392977 DOI: 10.1007/978-1-59745-321-9_21  0.359
2007 Herring CD, Palsson BØ. An evaluation of Comparative Genome Sequencing (CGS) by comparing two previously-sequenced bacterial genomes. Bmc Genomics. 8: 274. PMID 17697331 DOI: 10.1186/1471-2164-8-274  0.447
2006 Reed JL, Patel TR, Chen KH, Joyce AR, Applebee MK, Herring CD, Bui OT, Knight EM, Fong SS, Palsson BO. Systems approach to refining genome annotation. Proceedings of the National Academy of Sciences of the United States of America. 103: 17480-4. PMID 17088549 DOI: 10.1073/Pnas.0603364103  0.355
2006 Herring CD, Raghunathan A, Honisch C, Patel T, Applebee MK, Joyce AR, Albert TJ, Blattner FR, van den Boom D, Cantor CR, Palsson BØ. Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale. Nature Genetics. 38: 1406-12. PMID 17086184 DOI: 10.1038/Ng1906  0.587
2005 Barrett CL, Herring CD, Reed JL, Palsson BO. The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states. Proceedings of the National Academy of Sciences of the United States of America. 102: 19103-8. PMID 16357206 DOI: 10.1073/Pnas.0505231102  0.386
2005 Herring CD, Raffaelle M, Allen TE, Kanin EI, Landick R, Ansari AZ, Palsson BØ. Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays. Journal of Bacteriology. 187: 6166-74. PMID 16109958 DOI: 10.1128/Jb.187.17.6166-6174.2005  0.315
2005 Fong SS, Burgard AP, Herring CD, Knight EM, Blattner FR, Maranas CD, Palsson BO. In silico design and adaptive evolution of Escherichia coli for production of lactic acid Biotechnology and Bioengineering. 91: 643-648. PMID 15962337 DOI: 10.1002/Bit.20542  0.487
2004 Herring CD, Blattner FR. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR Journal of Bacteriology. 186: 6714-6720. PMID 15466022 DOI: 10.1128/Jb.186.20.6714-6720.2004  0.549
2004 Herring CD, Blattner FR. Conditional Lethal Amber Mutations in Essential Escherichia coli Genes Journal of Bacteriology. 186: 2673-2681. PMID 15090508 DOI: 10.1128/Jb.186.9.2673-2681.2004  0.552
2003 Herring CD, Glasner JD, Blattner FR. Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli. Gene. 311: 153-63. PMID 12853150 DOI: 10.1016/S0378-1119(03)00585-7  0.586
2002 Chevillard C, Ozaki J, Herring CD, Riblet R. A three-megabase yeast artificial chromosome contig spanning the C57BL mouse Igh locus. Journal of Immunology (Baltimore, Md. : 1950). 168: 5659-66. PMID 12023364 DOI: 10.4049/Jimmunol.168.11.5659  0.314
2002 Kolisnychenko V, Plunkett G, Herring CD, Fehér T, Pósfai J, Blattner FR, Pósfai G. Engineering a reduced Escherichia coli genome. Genome Research. 12: 640-7. PMID 11932248 DOI: 10.1101/Gr.217202  0.56
1998 Herring CD, Chevillard C, Johnston SL, Wettstein PJ, Riblet R. Vector-hexamer PCR isolation of all insert ends from a YAC contig of the mouse Igh locus. Genome Research. 8: 673-81. PMID 9647641 DOI: 10.1101/Gr.8.6.673  0.357
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