Andrea E. Wills, Ph.D. - Related publications

2015- Biochemistry University of Washington School of Medicine, Seattle, WA, United States 
development and regeneration
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Esmaeili M, Blythe SA, Tobias JW, Zhang K, Yang J, Klein PS. Chromatin accessibility and histone acetylation in the regulation of competence in early development. Developmental Biology. PMID 32119833 DOI: 10.1016/j.ydbio.2020.02.013   
2020 Karagianni P, Moulos P, Schmidt D, Odom DT, Talianidis I. Bookmarking by Non-pioneer Transcription Factors during Liver Development Establishes Competence for Future Gene Activation. Cell Reports. 30: 1319-1328.e6. PMID 32023452 DOI: 10.1016/j.celrep.2020.01.006   
2020 Tan JY, Biasini A, Young RS, Marques AC. Splicing of enhancer-associated lincRNAs contributes to enhancer activity. Life Science Alliance. 3. PMID 32086317 DOI: 10.26508/lsa.202000663   
2020 Sanders TJ, Wenck BR, Selan JN, Barker MP, Trimmer SA, Walker JE, Santangelo TJ. FttA is a CPSF73 homologue that terminates transcription in Archaea. Nature Microbiology. PMID 32094586 DOI: 10.1038/s41564-020-0667-3   
2020 Panchy NL, Lloyd JP, Shiu SH. Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data. Bmc Genomics. 21: 159. PMID 32054475 DOI: 10.1186/s12864-020-6554-8   
2020 Ngan CY, Wong CH, Tjong H, Wang W, Goldfeder RL, Choi C, He H, Gong L, Lin J, Urban B, Chow J, Li M, Lim J, Philip V, Murray SA, et al. Chromatin interaction analyses elucidate the roles of PRC2-bound silencers in mouse development. Nature Genetics. PMID 32094912 DOI: 10.1038/s41588-020-0581-x   
2020 Pang B, Snyder MP. Systematic identification of silencers in human cells. Nature Genetics. PMID 32094911 DOI: 10.1038/s41588-020-0578-5   
2020 Bolt CC, Duboule D. The regulatory landscapes of developmental genes. Development (Cambridge, England). 147. PMID 32014867 DOI: 10.1242/dev.171736   
2020 Wei D, Raza SHA, Zhang J, Wang X, Khan R, Ma Y, Zhang G, Luoreng Z, Zan L. Characterization of the promoter region of the bovine 3 gene: Roles of SREBF2 and PPARG. Physiological Genomics. PMID 32036767 DOI: 10.1152/physiolgenomics.00091.2019   
2020 Chiang S, Shinohara H, Huang JH, Tsai HK, Okada M. Inferring the transcriptional regulatory mechanism of signal-dependent gene expression via an integrative computational approach. Febs Letters. PMID 32052437 DOI: 10.1002/1873-3468.13757   
2020 Dorman CJ, Schumacher MA, Bush MJ, Brennan RG, Buttner MJ. When is a transcription factor a NAP? Current Opinion in Microbiology. 55: 26-33. PMID 32120333 DOI: 10.1016/j.mib.2020.01.019   
2020 Mavropoulos Papoudas S, Papanikolaou N, Nikolaou C. Monitoring the prolonged Tnf stimulation in space and time with topological-functional networks. Computational and Structural Biotechnology Journal. 18: 220-229. PMID 32021663 DOI: 10.1016/j.csbj.2020.01.001   
2020 Zhang L, Yu M, Xu H, Wei X, Liu Y, Huang C, Chen H, Guo Z. RNA sequencing revealed the abnormal transcriptional profile in cloned bovine embryos. International Journal of Biological Macromolecules. PMID 32035150 DOI: 10.1016/j.ijbiomac.2020.02.026   
2020 Ali MZ, Choubey S, Das D, Brewster RC. Probing Mechanisms of Transcription Elongation Through Cell-to-Cell Variability of RNA Polymerase. Biophysical Journal. PMID 32101716 DOI: 10.1016/j.bpj.2020.02.002   
2020 Fan G, Zheng H, Zhang K, Devi Ganeshan V, Opiyo SO, Liu D, Li M, Li G, Mitchell TK, Yun Y, Wang Z, Lu GD. FgHtf1 regulates global gene expression towards aerial mycelium and conidiophore formation in the cereal fungal pathogen . Applied and Environmental Microbiology. PMID 32086302 DOI: 10.1128/AEM.03024-19   
2020 Du H, Ning L, He B, Wang Y, Ge M, Xu J, Zhao H. Cross-Species Root Transcriptional Network Analysis Highlights Conserved Modules in Response to Nitrate between Maize and Sorghum. International Journal of Molecular Sciences. 21. PMID 32093344 DOI: 10.3390/ijms21041445   
2020 Alvarez JM, Schinke AL, Brooks MD, Pasquino A, Leonelli L, Varala K, Safi A, Krouk G, Krapp A, Coruzzi GM. Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade. Nature Communications. 11: 1157. PMID 32123177 DOI: 10.1038/s41467-020-14979-6   
2020 Luo X, van der Veer BK, Sun L, Bartoccetti M, Boretto M, Vankelecom H, Khoueiry R, Koh KP. Coordination of germ layer lineage choice by TET1 during primed pluripotency. Genes & Development. PMID 32115407 DOI: 10.1101/gad.329474.119   
2020 He B, Shi P, Lv Y, Gao Z, Chen G. Gene coexpression network analysis reveals the role of genes in senescence leaf of maize ( L.). Journal of Genetics. 99. PMID 32089522   
2020 Feldmann A, Dimitrova E, Kenney A, Lastuvkova A, Klose RJ. CDK-Mediator and FBXL19 prime developmental genes for activation by promoting atypical regulatory interactions. Nucleic Acids Research. PMID 31996894 DOI: 10.1093/nar/gkaa064   
2020 Wilkinson M, Darmanis S, Pisco AO, Huber G. Persistent features of intermittent transcription. Scientific Reports. 10: 3138. PMID 32081955 DOI: 10.1038/s41598-020-60094-3   
2020 Koth ML, Garcia-Moreno SA, Novak A, Holthusen KA, Kothandapani A, Jiang K, Taketo MM, Nicol B, Yao HH, Futtner CR, Maatouk DM, Jorgensen JS. Canonical Wnt/β-catenin activity and differential epigenetic marks direct sexually dimorphic regulation of and in developing gonads. Development (Cambridge, England). PMID 32108023 DOI: 10.1242/dev.183814   
2020 Bauersachs S, Mermillod P, Almiñana C. The Oviductal Extracellular Vesicles' RNA Cargo Regulates the Bovine Embryonic Transcriptome. International Journal of Molecular Sciences. 21. PMID 32075098 DOI: 10.3390/ijms21041303   
2020 Mitchelmore J, Grinberg NF, Wallace C, Spivakov M. Functional effects of variation in transcription factor binding highlight long-range gene regulation by epromoters. Nucleic Acids Research. PMID 32112106 DOI: 10.1093/nar/gkaa123   
2020 Tejedor G, Laplace-Builhé B, Luz-Crawford P, Assou S, Barthelaix A, Mathieu M, Kissa K, Jorgensen C, Collignon J, Chuchana P, Djouad F. Whole embryo culture, transcriptomics and RNA interference identify TBX1 and FGF11 as novel regulators of limb development in the mouse. Scientific Reports. 10: 3597. PMID 32107392 DOI: 10.1038/s41598-020-60217-w   
2020 Xing Y, Yang W, Liu G, Cui X, Meng H, Zhao H, Zhao X, Li J, Liu Z, Zhang MQ, Cai L. Dynamic Alternative Splicing During Mouse Preimplantation Embryo Development. Frontiers in Bioengineering and Biotechnology. 8: 35. PMID 32117919 DOI: 10.3389/fbioe.2020.00035   
2020 Hou TY, Nandu T, Li R, Chae M, Murakami S, Kraus WL. Characterization of basal and estrogen-regulated antisense transcription in breast cancer cells: Role in regulating sense transcription. Molecular and Cellular Endocrinology. 110746. PMID 32035111 DOI: 10.1016/j.mce.2020.110746   
2020 Peng Z, Cheng H, Sun G, Pan Z, Wang X, Geng X, He S, Du X. Expression patterns and functional divergence of homologous genes accompanied by polyploidization in cotton (Gossypium hirsutum L.). Science China. Life Sciences. PMID 32112269 DOI: 10.1007/s11427-019-1618-7   
2020 Doni Jayavelu N, Jajodia A, Mishra A, Hawkins RD. Candidate silencer elements for the human and mouse genomes. Nature Communications. 11: 1061. PMID 32103011 DOI: 10.1038/s41467-020-14853-5   
2020 Zhang Y, Huang J, Li X, Fang C, Wang L. Identification of Functional Transcriptional Binding Sites within Chicken Gene Promoter and Screening Its Regulators. Genes. 11. PMID 32050731 DOI: 10.3390/genes11020186   
2020 Basso MF, Lourenço-Tessutti IT, Busanello C, Pinto CEM, de Oliveira Freitas E, Ribeiro TP, de Almeida Engler J, de Oliveira AC, Morgante CV, Alves-Ferreira M, Grossi-de-Sa MF. Insights obtained using different modules of the cotton uceA1.7 promoter. Planta. 251: 56. PMID 32006110 DOI: 10.1007/s00425-020-03348-8   
2020 Flouriot G, Jehanno C, le Page Y, le Goff P, Boutin B, Michel D. The basal level of gene expression associated with chromatin loosening shapes Waddington landscapes and controls cell differentiation. Journal of Molecular Biology. PMID 32105732 DOI: 10.1016/j.jmb.2020.02.016   
2020 Catizone AN, Uzunbas GK, Celadova P, Kuang S, Bose D, Sammons MA. Locally acting transcription factors regulate p53-dependent cis-regulatory element activity. Nucleic Acids Research. PMID 32133495 DOI: 10.1093/nar/gkaa147   
2020 Vissers JHA, Dent LG, House CM, Kondo S, Harvey KF. Pits and CtBP Control Tissue Growth in with the Hippo Pathway Transcription Repressor, Tgi. Genetics. PMID 32122936 DOI: 10.1534/genetics.120.303147   
2020 Morioka MS, Kawaji H, Nishiyori-Sueki H, Murata M, Kojima-Ishiyama M, Carninci P, Itoh M. Cap Analysis of Gene Expression (CAGE): A Quantitative and Genome-Wide Assay of Transcription Start Sites. Methods in Molecular Biology (Clifton, N.J.). 2120: 277-301. PMID 32124327 DOI: 10.1007/978-1-0716-0327-7_20   
2020 Panatta E, Lena AM, Mancini M, Smirnov A, Marini A, Delli Ponti R, Botta-Orfila T, Tartaglia GG, Mauriello A, Zhang X, Calin GA, Melino G, Candi E. Long non-coding RNA uc.291 controls epithelial differentiation by interfering with the ACTL6A/BAF complex. Embo Reports. e46734. PMID 32017402 DOI: 10.15252/embr.201846734   
2020 Li Z, Wang P, You C, Yu J, Zhang X, Yan F, Ye Z, Shen C, Li B, Guo K, Liu N, Thyssen GN, Fang DD, Lindsey K, Zhang X, et al. Combined GWAS and eQTL analysis uncovers a genetic regulatory network orchestrating the initiation of secondary cell wall development in cotton. The New Phytologist. PMID 32017125 DOI: 10.1111/nph.16468   
2020 Yang PJ, Chen EH, Song ZH, He W, Liu SH, Dou W, Wang JJ. Molecular Characterization and Expression Profiling of Nuclear Receptor Gene Families in Oriental Fruit Fly, (Hendel). Insects. 11. PMID 32079114 DOI: 10.3390/insects11020126   
2020 Zhao H, Zhang W, Zhang T, Lin Y, Hu Y, Fang C, Jiang J. Genome-wide MNase hypersensitivity assay unveils distinct classes of open chromatin associated with H3K27me3 and DNA methylation in Arabidopsis thaliana. Genome Biology. 21: 24. PMID 32014062 DOI: 10.1186/s13059-020-1927-5   
2020 Giri R, Papadopoulos DK, Posadas DM, Potluri HK, Tomancak P, Mani M, Carthew RW. Ordered patterning of the sensory system is susceptible to stochastic features of gene expression. Elife. 9. PMID 32101167 DOI: 10.7554/eLife.53638   
2020 Hvitfeldt E, Xia C, Siegmund KD, Shibata D, Marjoram P. Epigenetic Conservation Is a Beacon of Function: An Analysis Using Methcon5 Software for Studying Gene Methylation. Jco Clinical Cancer Informatics. 4: 100-107. PMID 32078366 DOI: 10.1200/CCI.19.00109   
2020 Baluapuri A, Wolf E, Eilers M. Target gene-independent functions of MYC oncoproteins. Nature Reviews. Molecular Cell Biology. PMID 32071436 DOI: 10.1038/s41580-020-0215-2   
2020 Xiang G, Keller CA, Heuston EF, Giardine BM, An L, Wixom AQ, Miller A, Cockburn A, Sauria MEG, Weaver K, Lichtenberg J, Göttgens B, Li Q, Bodine D, Mahony S, et al. An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis. Genome Research. PMID 32132109 DOI: 10.1101/gr.255760.119   
2020 Choe HK, Cho J. Comprehensive Genome-Wide Approaches to Activity-Dependent Translational Control in Neurons. International Journal of Molecular Sciences. 21. PMID 32111062 DOI: 10.3390/ijms21051592   
2020 Khaminets A, Ronnen-Oron T, Baldauf M, Meier E, Jasper H. Cohesin controls intestinal stem cell identity by maintaining association of Escargot with target promoters. Elife. 9. PMID 32022682 DOI: 10.7554/eLife.48160   
2020 Brueckner L, Zhao PA, van Schaik T, Leemans C, Sima J, Peric-Hupkes D, Gilbert DM, van Steensel B. Local rewiring of genome-nuclear lamina interactions by transcription. The Embo Journal. e103159. PMID 32080885 DOI: 10.15252/embj.2019103159   
2020 Xian J, Wang Y, Niu K, Ma H, Ma X. Transcriptional regulation and expression network responding to cadmium stress in a Cd-tolerant perennial grass Poa Pratensis. Chemosphere. 250: 126158. PMID 32092564 DOI: 10.1016/j.chemosphere.2020.126158   
2020 Kauzlaric A, Jang SM, Morchikh M, Cassano M, Planet E, Benkirane M, Trono D. KAP1 targets actively transcribed genomic loci to exert pleomorphic effects on RNA polymerase II activity. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190334. PMID 32068487 DOI: 10.1098/rstb.2019.0334   
2020 Pan X, Yan W, Chang Z, Xu Y, Luo M, Xu C, Chen Z, Wu J, Tang X. OsMYB80 regulates anther development and pollen fertility by targeting multiple biological pathways. Plant & Cell Physiology. PMID 32142141 DOI: 10.1093/pcp/pcaa025   
2020 Ngo KA, Kishimoto K, Davis-Turak J, Pimplaskar A, Cheng Z, Spreafico R, Chen EY, Tam A, Ghosh G, Mitchell S, Hoffmann A. Dissecting the Regulatory Strategies of NF-κB RelA Target Genes in the Inflammatory Response Reveals Differential Transactivation Logics. Cell Reports. 30: 2758-2775.e6. PMID 32101750 DOI: 10.1016/j.celrep.2020.01.108