Vilas Menon, Ph.D. - Publications

Affiliations: 
Applied Mathematics Northwestern University, Evanston, IL 
Area:
Computational Neuroscience

20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Feng H, Moakley DF, Chen S, McKenzie MG, Menon V, Zhang C. Complexity and graded regulation of neuronal cell-type-specific alternative splicing revealed by single-cell RNA sequencing. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33674385 DOI: 10.1073/pnas.2013056118  0.32
2019 Stražar M, Žagar L, Kokošar J, Tanko V, Erjavec A, Poličar PG, Starič A, Demšar J, Shaulsky G, Menon V, Lemire A, Parikh A, Zupan B. scOrange-a tool for hands-on training of concepts from single-cell data analytics. Bioinformatics (Oxford, England). 35: i4-i12. PMID 31510695 DOI: 10.1093/Bioinformatics/Btz348  0.322
2019 Shekhar K, Menon V. Identification of Cell Types from Single-Cell Transcriptomic Data. Methods in Molecular Biology (Clifton, N.J.). 1935: 45-77. PMID 30758819 DOI: 10.1007/978-1-4939-9057-3_4  0.386
2018 Tasic B, Yao Z, Graybuck LT, Smith KA, Nguyen TN, Bertagnolli D, Goldy J, Garren E, Economo MN, Viswanathan S, Penn O, Bakken T, Menon V, Miller J, Fong O, et al. Shared and distinct transcriptomic cell types across neocortical areas. Nature. 563: 72-78. PMID 30382198 DOI: 10.1038/S41586-018-0654-5  0.394
2018 Cembrowski MS, Menon V. Continuous Variation within Cell Types of the Nervous System. Trends in Neurosciences. PMID 29576429 DOI: 10.1016/J.Tins.2018.02.010  0.609
2018 Teeter C, Iyer R, Menon V, Gouwens N, Feng D, Berg J, Szafer A, Cain N, Zeng H, Hawrylycz M, Koch C, Mihalas S. Generalized leaky integrate-and-fire models classify multiple neuron types. Nature Communications. 9: 709. PMID 29459723 DOI: 10.1038/S41467-017-02717-4  0.379
2017 Menon V. Clustering single cells: a review of approaches on high-and low-depth single-cell RNA-seq data. Briefings in Functional Genomics. PMID 29236955 DOI: 10.1093/Bfgp/Elx044  0.389
2017 Furchtgott LA, Melton S, Menon V, Ramanathan S. Discovering sparse transcription factor codes for cell states and state transitions during development. Elife. 6. PMID 28296636 DOI: 10.7554/Elife.20488  0.368
2017 Jang S, Choubey S, Furchtgott L, Zou LN, Doyle A, Menon V, Loew EB, Krostag AR, Martinez RA, Madisen L, Levi BP, Ramanathan S. Dynamics of embryonic stem cell differentiation inferred from single-cell transcriptomics show a series of transitions through discrete cell states. Elife. 6. PMID 28296635 DOI: 10.7554/Elife.20487  0.351
2017 Close JL, Yao Z, Levi BP, Miller JA, Bakken TE, Menon V, Ting JT, Wall A, Krostag AR, Thomsen ER, Nelson AM, Mich JK, Hodge RD, Shehata SI, Glass IA, et al. Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation. Neuron. 93: 1035-1048.e5. PMID 28279351 DOI: 10.1016/J.Neuron.2017.02.014  0.428
2017 Yao Z, Mich JK, Ku S, Menon V, Krostag AR, Martinez RA, Furchtgott L, Mulholland H, Bort S, Fuqua MA, Gregor BW, Hodge RD, Jayabalu A, May RC, Melton S, et al. A Single-Cell Roadmap of Lineage Bifurcation in Human ESC Models of Embryonic Brain Development. Cell Stem Cell. 20: 120-134. PMID 28094016 DOI: 10.1016/J.Stem.2016.09.011  0.403
2016 Tasic B, Menon V, Nguyen TN, Kim TK, Jarsky T, Yao Z, Levi B, Gray LT, Sorensen SA, Dolbeare T, Bertagnolli D, Goldy J, Shapovalova N, Parry S, Lee C, et al. Adult mouse cortical cell taxonomy revealed by single cell transcriptomics. Nature Neuroscience. PMID 26727548 DOI: 10.1038/Nn.4216  0.411
2015 Hawrylycz M, Miller JA, Menon V, Feng D, Dolbeare T, Guillozet-Bongaarts AL, Jegga AG, Aronow BJ, Lee CK, Bernard A, Glasser MF, Dierker DL, Menche J, Szafer A, Collman F, et al. Canonical genetic signatures of the adult human brain. Nature Neuroscience. PMID 26571460 DOI: 10.1038/Nn.4171  0.349
2015 Sorensen SA, Bernard A, Menon V, Royall JJ, Glattfelder KJ, Desta T, Hirokawa K, Mortrud M, Miller JA, Zeng H, Hohmann JG, Jones AR, Lein ES. Correlated gene expression and target specificity demonstrate excitatory projection neuron diversity. Cerebral Cortex (New York, N.Y. : 1991). 25: 433-49. PMID 24014670 DOI: 10.1093/Cercor/Bht243  0.317
2014 van de Leemput J, Boles NC, Kiehl TR, Corneo B, Lederman P, Menon V, Lee C, Martinez RA, Levi BP, Thompson CL, Yao S, Kaykas A, Temple S, Fasano CA. CORTECON: a temporal transcriptome analysis of in vitro human cerebral cortex development from human embryonic stem cells. Neuron. 83: 51-68. PMID 24991954 DOI: 10.1016/J.Neuron.2014.05.013  0.337
2014 Miller JA, Menon V, Goldy J, Kaykas A, Lee CK, Smith KA, Shen EH, Phillips JW, Lein ES, Hawrylycz MJ. Improving reliability and absolute quantification of human brain microarray data by filtering and scaling probes using RNA-Seq. Bmc Genomics. 15: 154. PMID 24564186 DOI: 10.1186/1471-2164-15-154  0.308
2013 Menon V, Musial TF, Liu A, Katz Y, Kath WL, Spruston N, Nicholson DA. Balanced synaptic impact via distance-dependent synapse distribution and complementary expression of AMPARs and NMDARs in hippocampal dendrites. Neuron. 80: 1451-63. PMID 24360547 DOI: 10.1016/J.Neuron.2013.09.027  0.536
2013 Iyer R, Menon V, Buice M, Koch C, Mihalas S. The influence of synaptic weight distribution on neuronal population dynamics. Plos Computational Biology. 9: e1003248. PMID 24204219 DOI: 10.1371/Journal.Pcbi.1003248  0.308
2009 Menon V, Spruston N, Kath WL. A state-mutating genetic algorithm to design ion-channel models. Proceedings of the National Academy of Sciences of the United States of America. 106: 16829-34. PMID 19805381 DOI: 10.1073/Pnas.0903766106  0.505
2009 Katz Y, Menon V, Nicholson DA, Geinisman Y, Kath WL, Spruston N. Synapse distribution suggests a two-stage model of dendritic integration in CA1 pyramidal neurons. Neuron. 63: 171-7. PMID 19640476 DOI: 10.1016/J.Neuron.2009.06.023  0.543
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