Theodore J. Perkins, Ph.D. - Publications

University of Massachusetts, Amherst, Amherst, MA 
Reinforcement Learning

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Year Citation  Score
2016 Benyoucef A, Palii CG, Wang C, Porter CJ, Chu A, Dai F, Tremblay V, Rakopoulos P, Singh K, Huang S, Pflumio F, Hébert J, Couture JF, Perkins TJ, Ge K, et al. UTX inhibition as selective epigenetic therapy against TAL1-driven T-cell acute lymphoblastic leukemia. Genes & Development. 30: 508-21. PMID 26944678 DOI: 10.1101/gad.276790.115  1
2015 Ramachandran P, Palidwor GA, Perkins TJ. BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlates. Epigenetics & Chromatin. 8: 33. PMID 26388941 DOI: 10.1186/s13072-015-0028-2  1
2015 Ghadie MA, Japkowicz N, Perkins TJ. Gene selection for the reconstruction of stem cell differentiation trees: a linear programming approach. Bioinformatics (Oxford, England). PMID 25847008 DOI: 10.1093/bioinformatics/btv192  1
2015 Awdeh A, Phenix H, Kaern M, Perkins TJ. The potential power of dynamics in epistasis analysis Bcb 2015 - 6th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 106-115. DOI: 10.1145/2808719.2808730  1
2015 Grinberg Y, Perkins TJ. State sequence analysis in hidden Markov models Uncertainty in Artificial Intelligence - Proceedings of the 31st Conference, Uai 2015. 336-344.  1
2014 Perkins TJ, Foxall E, Glass L, Edwards R. A scaling law for random walks on networks. Nature Communications. 5: 5121. PMID 25311870 DOI: 10.1038/ncomms6121  1
2014 Palii CG, Vulesevic B, Fraineau S, Pranckeviciene E, Griffith AJ, Chu A, Faralli H, Li Y, McNeill B, Sun J, Perkins TJ, Dilworth FJ, Perez-Iratxeta C, Suuronen EJ, Allan DS, et al. Trichostatin A enhances vascular repair by injected human endothelial progenitors through increasing the expression of TAL1-dependent genes. Cell Stem Cell. 14: 644-57. PMID 24792117 DOI: 10.1016/j.stem.2014.03.003  1
2014 Li K, Precup D, Perkins TJ. Pooled screening for synergistic interactions subject to blocking and noise Plos One. 9. PMID 24454940 DOI: 10.1371/journal.pone.0085864  1
2014 Nilufar S, Perkins TJ. Learning to detect contours with dynamic programming snakes Proceedings - International Conference On Pattern Recognition. 984-989. DOI: 10.1109/ICPR.2014.179  1
2013 Nilufar S, Morrow AA, Lee JM, Perkins TJ. FiloDetect: Automatic detection of filopodia from fluorescence microscopy images Bmc Systems Biology. 7. PMID 23880086 DOI: 10.1186/1752-0509-7-66  1
2013 Soleimani VD, Palidwor GA, Ramachandran P, Perkins TJ, Rudnicki MA. Chromatin tandem affinity purification sequencing Nature Protocols. 8: 1525-1534. PMID 23845964 DOI: 10.1038/nprot.2013.088  1
2013 Ramachandran P, Palidwor GA, Porter CJ, Perkins TJ. MaSC: Mappability-sensitive cross-correlation for estimating mean fragment length of single-end short-read sequencing data Bioinformatics. 29: 444-450. PMID 23300135 DOI: 10.1093/bioinformatics/btt001  1
2012 Levin P, Lefebvre J, Perkins TJ. What do molecules do when we are not looking? State sequence analysis for stochastic chemical systems Journal of the Royal Society Interface. 9: 3411-3425. PMID 22977098 DOI: 10.1098/rsif.2012.0633  1
2012 Soleimani VD, Punch VG, Kawabe Y, Jones AE, Palidwor GA, Porter CJ, Cross JW, Carvajal JJ, Kockx CE, van IJcken WF, Perkins TJ, Rigby PW, Grosveld F, Rudnicki MA. Transcriptional dominance of Pax7 in adult myogenesis is due to high-affinity recognition of homeodomain motifs. Developmental Cell. 22: 1208-20. PMID 22609161 DOI: 10.1016/j.devcel.2012.03.014  1
2012 Lefebvre J, Perkins TJ. Neural population densities shape network correlations. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 021914. PMID 22463251 DOI: 10.1103/PhysRevE.85.021914  1
2012 Iacucci E, Zingg HH, Perkins TJ. Methods for determining the statistical significance of enrichment or depletion of gene ontology classifications under weighted membership Frontiers in Genetics. 3. DOI: 10.3389/fgene.2012.00024  1
2011 Chan CC, Scoggin S, Wang D, Cherry S, Dembo T, Greenberg B, Jin EJ, Kuey C, Lopez A, Mehta SQ, Perkins TJ, Brankatschk M, Rothenfluh A, Buszczak M, Hiesinger PR. Systematic discovery of Rab GTPases with synaptic functions in Drosophila. Current Biology : Cb. 21: 1704-15. PMID 22000105 DOI: 10.1016/j.cub.2011.08.058  1
2011 Phenix H, Morin K, Batenchuk C, Parker J, Abedi V, Yang L, Tepliakova L, Perkins TJ, Kærn M. Quantitative epistasis analysis and pathway inference from genetic interaction data. Plos Computational Biology. 7: e1002048. PMID 21589890 DOI: 10.1371/journal.pcbi.1002048  1
2011 Charlebois DA, Perkins TJ, Kaern M. Stochastic gene expression and the processing and propagation of noisy signals in genetic networks Intelligent Systems Reference Library. 11: 89-112. DOI: 10.1007/978-3-642-19621-8_5  1
2010 Salehi M, Perkins TJ. Maximum probability reaction sequences in stochastic chemical kinetic systems. Frontiers in Physiology. 1: 170. PMID 21629860 DOI: 10.3389/fphys.2010.00170  1
2010 Summer G, Perkins TJ. Functional data analysis for identifying nonlinear models of gene regulatory networks. Bmc Genomics. 11: S18. PMID 21143801 DOI: 10.1186/1471-2164-11-S4-S18  1
2010 Husainy AN, Morrow AA, Perkins TJ, Lee JM. Robust patterns in the stochastic organization of filopodia. Bmc Cell Biology. 11: 86. PMID 21083909 DOI: 10.1186/1471-2121-11-86  1
2010 Palidwor GA, Perkins TJ, Xia X. A general model of codon bias due to GC mutational bias. Plos One. 5: e13431. PMID 21048949 DOI: 10.1371/journal.pone.0013431  1
2010 Perkins TJ, Wilds R, Glass L. Robust dynamics in minimal hybrid models of genetic networks. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 368: 4961-75. PMID 20921006 DOI: 10.1098/rsta.2010.0139  1
2010 Song C, Phenix H, Abedi V, Scott M, Ingalls BP, Kaern M, Perkins TJ. Estimating the stochastic bifurcation structure of cellular networks. Plos Computational Biology. 6: e1000699. PMID 20221261 DOI: 10.1371/journal.pcbi.1000699  1
2010 Perkins TJ, Hallett MT. A trade-off between sample complexity and computational complexity in learning Boolean networks from time-series data. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 118-25. PMID 20150674 DOI: 10.1109/TCBB.2008.38  1
2009 Perkins TJ. Maximum likelihood trajectories for continuous-time Markov chains Advances in Neural Information Processing Systems 22 - Proceedings of the 2009 Conference. 1437-1445.  1
2006 Perkins TJ, Jaeger J, Reinitz J, Glass L. Reverse engineering the gap gene network of Drosophila melanogaster. Plos Computational Biology. 2: e51. PMID 16710449 DOI: 10.1371/journal.pcbi.0020051  1
2006 Rosenfeld N, Perkins TJ, Alon U, Elowitz MB, Swain PS. A fluctuation method to quantify in vivo fluorescence data. Biophysical Journal. 91: 759-66. PMID 16648159 DOI: 10.1529/biophysj.105.073098  1
2005 Glass L, Perkins TJ, Mason J, Siegelmann HT, Edwards R. Chaotic dynamics in an electronic model of a genetic network Journal of Statistical Physics. 121: 989-994. DOI: 10.1007/s10955-005-7009-y  1
2003 Perkins TJ, Barto AG. Lyapunov design for safe reinforcement learning Journal of Machine Learning Research. 3: 803-832.  1
2003 Perkins TJ, Precup D. A convergent form of approximate policy iteration Advances in Neural Information Processing Systems 1
2002 Bernstein DS, Perkins TJ, Zilberstein S, Finkelstein L. Scheduling contract algorithms on multiple processors Proceedings of the National Conference On Artificial Intelligence. 702-706.  1
2001 Perkins TJ, Barto AG. Heuristic search in infinite state spaces guided by Lyapunov analysis Ijcai International Joint Conference On Artificial Intelligence. 242-247.  1
1999 Moll R, Barto AG, Perkins TJ, Sutton RS. Learning instance-independent value functions to enhance local search Advances in Neural Information Processing Systems. 1017-1023.  1
Low-probability matches
2002 Perkins TJ. Reinforcement learning for POMDPs based on action values and stochastic optimization Proceedings of the National Conference On Artificial Intelligence. 199-204.  0.12
2008 Perkins TJ. Nothing to sneeze at. Ems Magazine. 37: 30, 32. PMID 18811066  0.08
2007 Perkins TJ. The gap gene system of Drosophila melanogaster: model-fitting and validation. Annals of the New York Academy of Sciences. 1115: 116-31. PMID 17934052 DOI: 10.1196/annals.1407.015  0.08
2007 Perkins TJ. Tell me a story. The importance of good documentation. Ems Magazine. 36: 30, 32-3. PMID 17910240  0.08
2008 Perkins TJ. "Level with me, sugar!" Dealing with diabetics and diabetic emergencies. Ems Magazine. 37: 52, 54, 56. PMID 18814740  0.04
2007 Perkins TJ. Keeping it under control. Common and effective methods of hemorrhage control. Ems Magazine. 36: 36-7. PMID 17642329  0.04
2007 Perkins TJ. Fracture management. Effective prehospital splinting techniques. Emergency Medical Services. 36: 35-7, 39. PMID 17461378  0.04
2021 Awdeh A, Turcotte M, Perkins TJ. WACS: improving ChIP-seq peak calling by optimally weighting controls. Bmc Bioinformatics. 22: 69. PMID 33588754 DOI: 10.1186/s12859-020-03927-2  0.01
2020 Sanchez-Taltavull D, Perkins TJ, Dommann N, Melin N, Keogh A, Candinas D, Stroka D, Beldi G. Bayesian correlation is a robust gene similarity measure for single-cell RNA-seq data. Nar Genomics and Bioinformatics. 2: lqaa002. PMID 33575552 DOI: 10.1093/nargab/lqaa002  0.01
2020 Gillespie MA, Palii CG, Sanchez-Taltavull D, Perkins TJ, Brand M, Ranish JA. Absolute quantification of transcription factors in human erythropoiesis using selected reaction monitoring mass spectrometry. Star Protocols. 1: 100216. PMID 33377109 DOI: 10.1016/j.xpro.2020.100216  0.01
2020 Karimnezhad A, Palidwor GA, Thavorn K, Stewart DJ, Campbell PA, Lo B, Perkins TJ. Accuracy and reproducibility of somatic point mutation calling in clinical-type targeted sequencing data. Bmc Medical Genomics. 13: 156. PMID 33059707 DOI: 10.1186/s12920-020-00803-z  0.01
2020 Lazure F, Blackburn DM, Corchado AH, Sahinyan K, Karam N, Sharanek A, Nguyen D, Lepper C, Najafabadi HS, Perkins TJ, Jahani-Asl A, Soleimani VD. Myf6/MRF4 is a myogenic niche regulator required for the maintenance of the muscle stem cell pool. Embo Reports. e49499. PMID 33047485 DOI: 10.15252/embr.201949499  0.01
2020 Gillespie MA, Palii CG, Sanchez-Taltavull D, Shannon P, Longabaugh WJR, Downes DJ, Sivaraman K, Espinoza HM, Hughes JR, Price ND, Perkins TJ, Ranish JA, Brand M. Absolute Quantification of Transcription Factors Reveals Principles of Gene Regulation in Erythropoiesis. Molecular Cell. PMID 32330456 DOI: 10.1016/j.molcel.2020.03.031  0.01
2020 Matsumoto S, Porter CJ, Ogasawara N, Iwatani C, Tsuchiya H, Seita Y, Chang YW, Okamoto I, Saitou M, Ema M, Perkins TJ, Stanford WL, Tanaka S. Establishment of macaque trophoblast stem cell lines derived from cynomolgus monkey blastocysts. Scientific Reports. 10: 6827. PMID 32321940 DOI: 10.1038/s41598-020-63602-7  0.01
2020 Sanchez-Taltavull D, Perkins TJ, Dommann N, Melin N, Keogh A, Candinas D, Stroka D, Beldi G. Bayesian correlation is a robust gene similarity measure for single-cell RNA-seq data Nar Genomics and Bioinformatics. 2. DOI: 10.1093/nargab/lqaa002  0.01
2019 Carpenedo RL, Kwon SY, Tanner RM, Yockell-Lelièvre J, Choey C, Doré C, Ho M, Stewart DJ, Perkins TJ, Stanford WL. Transcriptomically Guided Mesendoderm Induction of Human Pluripotent Stem Cells Using a Systematically Defined Culture Scheme. Stem Cell Reports. PMID 31813826 DOI: 10.1016/j.stemcr.2019.11.001  0.01
2019 Bashkeel N, Perkins TJ, Kærn M, Lee JM. Human gene expression variability and its dependence on methylation and aging. Bmc Genomics. 20: 941. PMID 31810449 DOI: 10.1186/s12864-019-6308-7  0.01
2019 Blackburn DM, Lazure F, Corchado AH, Perkins TJ, Najafabadi HS, Soleimani VD. High-Resolution Genome-Wide Expression Analysis of Single Myofibers Using SMART-Seq. The Journal of Biological Chemistry. PMID 31753917 DOI: 10.1074/jbc.RA119.011506  0.01
2019 Bharathy N, Berlow NE, Wang E, Abraham J, Settelmeyer TP, Hooper JE, Svalina MN, Bajwa Z, Goros MW, Hernandez BS, Wolff JE, Pal R, Davies AM, Ashok A, Bushby D, ... ... Perkins TJ, et al. Preclinical rationale for entinostat in embryonal rhabdomyosarcoma. Skeletal Muscle. 9: 12. PMID 31113472 DOI: 10.1186/s13395-019-0198-x  0.01
2019 Chitpin JG, Awdeh A, Perkins TJ. RECAP reveals the true statistical significance of ChIP-seq peak calls. Bioinformatics (Oxford, England). PMID 30824903 DOI: 10.1093/bioinformatics/btz150  0.01
2018 Bharathy N, Berlow NE, Wang E, Abraham J, Settelmeyer TP, Hooper JE, Svalina MN, Ishikawa Y, Zientek K, Bajwa Z, Goros MW, Hernandez BS, Wolff JE, Rudek MA, Xu L, ... ... Perkins TJ, et al. The HDAC3-SMARCA4-miR-27a axis promotes expression of the fusion oncogene in rhabdomyosarcoma. Science Signaling. 11. PMID 30459282 DOI: 10.1126/scisignal.aau7632  0.01
2018 Maganti HB, Jrade H, Cafariello C, Manias Rothberg JL, Porter CJ, Yockell-Lelièvre J, Battaion HL, Khan ST, Howard JP, Li Y, Grzybowski AT, Sabri E, Ruthenburg AJ, Dilworth FJ, Perkins TJ, et al. Targeting the MTF2-MDM2 axis sensitizes refractory acute myeloid leukemia to chemotherapy. Cancer Discovery. PMID 30115703 DOI: 10.1158/2159-8290.CD-17-0841  0.01
2018 Soleimani VD, Nguyen D, Ramachandran P, Palidwor GA, Porter CJ, Yin H, Perkins TJ, Rudnicki MA. Cis-regulatory determinants of MyoD function. Nucleic Acids Research. PMID 30016497 DOI: 10.1093/nar/gky388  0.01
2018 Rothberg JLM, Maganti HB, Jrade H, Porter CJ, Palidwor GA, Cafariello C, Battaion HL, Khan ST, Perkins TJ, Paulson RF, Ito CY, Stanford WL. Mtf2-PRC2 control of canonical Wnt signaling is required for definitive erythropoiesis. Cell Discovery. 4: 21. PMID 29736258 DOI: 10.1038/s41421-018-0022-5  0.01
2018 Dorreen AP, Lo B, Little J, Gibbings D, Jonker D, Campbell PA, Moyana T, Perkins T, Chatterjee A. Tu1678 - Micro-RNA in Early Colorectal Cancer: Discovery of a Novel Micro-RNA Profile Gastroenterology. 154: S-992. DOI: 10.1016/s0016-5085(18)33322-5  0.01
2018 Palii C, Chu A, Kelliher M, Perkins T, Brand M. TAL1 Interferes with the Regulatory Function of the T-Cell Regulator BCL11B in T-ALL Experimental Hematology. 64: S91. DOI: 10.1016/j.exphem.2018.06.113  0.01
2017 Fraineau S, Palii CG, McNeill B, Ritso M, Shelley WC, Prasain N, Chu A, Vion E, Rieck K, Nilufar S, Perkins TJ, Rudnicki MA, Allan DS, Yoder MC, Suuronen EJ, et al. Epigenetic Activation of Pro-angiogenic Signaling Pathways in Human Endothelial Progenitors Increases Vasculogenesis. Stem Cell Reports. PMID 29033304 DOI: 10.1016/j.stemcr.2017.09.009  0.01
2017 Ramachandran P, Sánchez-Taltavull D, Perkins TJ. Uncovering robust patterns of microRNA co-expression across cancers using Bayesian Relevance Networks. Plos One. 12: e0183103. PMID 28817636 DOI: 10.1371/journal.pone.0183103  0.01
2017 Chen Z, Chang WY, Etheridge A, Strickfaden H, Jin Z, Palidwor G, Cho JH, Wang K, Kwon SY, Doré C, Raymond A, Hotta A, Ellis J, Kandel RA, Dilworth FJ, ... Perkins TJ, et al. Reprogramming progeria fibroblasts re-establishes a normal epigenetic landscape. Aging Cell. PMID 28597562 DOI: 10.1111/acel.12621  0.01
2017 Kumar R, Gont A, Perkins TJ, Hanson JEL, Lorimer IAJ. Induction of senescence in primary glioblastoma cells by serum and TGFβ. Scientific Reports. 7: 2156. PMID 28526854 DOI: 10.1038/s41598-017-02380-1  0.01
2017 Shah PK, Tanner MR, Kovacevic I, Rankin A, Marshall TE, Noblett N, Tran NN, Roenspies T, Hung J, Chen Z, Slatculescu C, Perkins TJ, Bao Z, Colavita A. PCP and SAX-3/Robo Pathways Cooperate to Regulate Convergent Extension-Based Nerve Cord Assembly in C. elegans. Developmental Cell. 41: 195-203.e3. PMID 28441532 DOI: 10.1016/j.devcel.2017.03.024  0.01
2017 Awdeh A, Phenix H, Kaern M, Perkins T. Dynamics in Epistasis Analysis. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28092574 DOI: 10.1109/TCBB.2017.2653110  0.01
2017 Grinberg Y, Perkins TJ. Fully polynomial-time computation of maximum likelihood trajectories in Markov chains Information Processing Letters. 118: 53-57. DOI: 10.1016/j.ipl.2016.09.012  0.01
2016 Sánchez-Taltavull D, Ramachandran P, Lau N, Perkins TJ. Bayesian Correlation Analysis for Sequence Count Data. Plos One. 11: e0163595. PMID 27701449 DOI: 10.1371/journal.pone.0163595  0.01
2016 Bar J, Hasim MS, Baghai T, Niknejad N, Perkins TJ, Stewart DJ, Sekhon HS, Villeneuve PJ, Dimitroulakos J. Induction of Activating Transcription Factor 3 Is Associated with Cisplatin Responsiveness in Non-Small Cell Lung Carcinoma Cells. Neoplasia (New York, N.Y.). 18: 525-35. PMID 27659012 DOI: 10.1016/j.neo.2016.07.004  0.01
2016 Sánchez-Taltavull D, MacLeod M, Perkins TJ. On cross-conditional and fluctuation correlations in competitive RNA networks. Bioinformatics (Oxford, England). 32: i790-i797. PMID 27587702 DOI: 10.1093/bioinformatics/btw472  0.01
2016 Jahani-Asl A, Yin H, Soleimani VD, Haque T, Luchman HA, Chang NC, Sincennes MC, Puram SV, Scott AM, Lorimer IA, Perkins TJ, Ligon KL, Weiss S, Rudnicki MA, Bonni A. Control of glioblastoma tumorigenesis by feed-forward cytokine signaling. Nature Neuroscience. PMID 27110918 DOI: 10.1038/nn.4295  0.01
2015 Cassar PA, Carpenedo RL, Samavarchi-Tehrani P, Olsen JB, Park CJ, Chang WY, Chen Z, Choey C, Delaney S, Guo H, Guo H, Tanner RM, Perkins TJ, Tenenbaum SA, Emili A, et al. Integrative genomics positions MKRN1 as a novel ribonucleoprotein within the embryonic stem cell gene regulatory network. Embo Reports. 16: 1334-57. PMID 26265008 DOI: 10.15252/embr.201540974  0.01
2015 Perkins TJ, Bittar RG, McGillivray JA, Cox II, Stokes MA. Increased premotor cortex activation in high functioning autism during action observation. Journal of Clinical Neuroscience : Official Journal of the Neurosurgical Society of Australasia. 22: 664-9. PMID 25726458 DOI: 10.1016/j.jocn.2014.10.007  0.01
2015 Bar J, Gorn-Hondermann I, Moretto P, Perkins TJ, Niknejad N, Stewart DJ, Goss GD, Dimitroulakos J. miR Profiling Identifies Cyclin-Dependent Kinase 6 Downregulation as a Potential Mechanism of Acquired Cisplatin Resistance in Non-Small-Cell Lung Carcinoma. Clinical Lung Cancer. PMID 25703099 DOI: 10.1016/j.cllc.2015.01.008  0.01
2015 Jahani-Asl A, Yin H, Soleimani V, Chang N, Sincennes M, Luchman HA, Sidharth P, Scott A, Lorimer I, Perkins T, Ligon K, Weiss S, Rudnicki M, Bonni A. CSIG-06EGFRvIII REQUIRES OSMR AS A CO-RECEPTOR TO DRIVE GLIOBLASTOMA PATHOGENESIS Neuro-Oncology. 17: v67.2-v67. DOI: 10.1093/neuonc/nov210.06  0.01
2014 Nilufar S, Perkins TJ. Learning a cost function for microscope image segmentation. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2014: 5506-9. PMID 25571241 DOI: 10.1109/EMBC.2014.6944873  0.01
2014 Perkins TJ, Stokes MA, McGillivray JA, Mussap AJ, Cox IA, Maller JJ, Bittar RG. Increased left hemisphere impairment in high-functioning autism: a tract based spatial statistics study. Psychiatry Research. 224: 119-23. PMID 25159311 DOI: 10.1016/j.pscychresns.2014.08.003  0.01
2014 Nilufar S, Perkins TJ. Learning a cost function for microscope image segmentation 2014 36th Annual International Conference of the Ieee Engineering in Medicine and Biology Society, Embc 2014. 5506-5509. DOI: 10.1109/EMBC.2014.6944873  0.01
2014 Manias-Rothberg J, Maganti H, Porter C, Palidwor G, Paulson R, Perkins T, Ito C, Stanford W. Polycomb-like 2 (PCL2) is required for hematopoietic development Experimental Hematology. 42: S47. DOI: 10.1016/j.exphem.2014.07.175  0.01
2013 Ramachandran P, Perkins TJ. Adaptive bandwidth kernel density estimation for next-generation sequencing data. Bmc Proceedings. 7: S7. PMID 24564977 DOI: 10.1186/1753-6561-7-S7-S7  0.01
2012 Iacucci E, Zingg HH, Perkins TJ. Methods for Determining the Statistical Significance of Enrichment or Depletion of Gene Ontology Classifications under Weighted Membership. Frontiers in Genetics. 3: 24. PMID 22375144 DOI: 10.3389/fgene.2012.00024  0.01
2012 Perkins TJ. The show that started it all. Emergency! Debuted 40 years ago this month. Ems World. 41: 48-9. PMID 22299493  0.01
2012 Edwards R, Foxall E, Perkins TJ. Scaling properties of paths on graphs Electronic Journal of Linear Algebra. 23: 966-988.  0.01
2010 Salehi M, Perkins TJ. Maximum probability reaction sequences in stochastic chemical kinetic systems. Frontiers in Psychiatry. 1: 137. PMID 21441987 DOI: 10.3389/fpsyt.2010.00137  0.01
2010 Song C, Phenix H, Abedi V, Scott M, Ingalls BP, Kærn M, Perkins TJ. Correction: Estimating the Stochastic Bifurcation Structure of Cellular Networks Plos Computational Biology. 6. DOI: 10.1371/annotation/9a35fa58-f81c-41b4-9fa9-c1aeedbf0fff  0.01
2009 Perkins TJ, Swain PS. Strategies for cellular decision-making. Molecular Systems Biology. 5: 326. PMID 19920811 DOI: 10.1038/msb.2009.83  0.01
2009 Zamparo L, Perkins TJ. Statistical lower bounds on protein copy number from fluorescence expression images. Bioinformatics (Oxford, England). 25: 2670-6. PMID 19574287 DOI: 10.1093/bioinformatics/btp415  0.01
2008 Durnford AJ, Perkins TJ, Perry JM. An evaluation of alcohol attendances to an inner city emergency department before and after the introduction of the UK Licensing Act 2003. Bmc Public Health. 8: 379. PMID 18976454 DOI: 10.1186/1471-2458-8-379  0.01
2008 Moriguchi G, Perkins TJ, Studnek J. Views from the field. Interviewed by Raphael M Barishansky. Ems Magazine. 37: 105-8. PMID 18959346  0.01
2008 Cory SM, Perkins TJ. Implementing arithmetic and other analytic operations by transcriptional regulation. Plos Computational Biology. 4: e1000064. PMID 18437243 DOI: 10.1371/journal.pcbi.1000064  0.01
2007 Libby E, Perkins TJ, Swain PS. Noisy information processing through transcriptional regulation. Proceedings of the National Academy of Sciences of the United States of America. 104: 7151-6. PMID 17420464 DOI: 10.1073/pnas.0608963104  0.01
2006 Perkins TJ, Hallett M, Glass L. Dynamical properties of model gene networks and implications for the inverse problem. Bio Systems. 84: 115-23. PMID 16386356 DOI: 10.1016/j.biosystems.2005.09.010  0.01
2005 Huber PA, Birdsey GM, Lumb MJ, Prowse DT, Perkins TJ, Knight DR, Danpure CJ. Peroxisomal import of human alanine:glyoxylate aminotransferase requires ancillary targeting information remote from its C terminus. The Journal of Biological Chemistry. 280: 27111-20. PMID 15911627 DOI: 10.1074/jbc.M502719200  0.01
2005 Barishansky RM, O'Connor KE, Perkins TJ. "Is there a doctor in the house?" Addressing bystander physician involvement on scene. Emergency Medical Services. 34: 87-90. PMID 15743126  0.01
2005 Barishansky RM, O'Connor KE, Perkins TJ. Name that tune: an introduction to auscultating, differentiating and assessing lung sounds. Emergency Medical Services. 34: 75-80. PMID 15743125  0.01
2004 Perkins TJ, Hallett M, Glass L. Inferring models of gene expression dynamics. Journal of Theoretical Biology. 230: 289-99. PMID 15302539 DOI: 10.1016/j.jtbi.2004.05.022  0.01
1978 Baker BB, Jafek BW, Balkany TJ, Perkins TJ. Undergraduate medical education in facial plastic and reconstructive surgery. Otolaryngology. 86: ORL-865-8. PMID 113744  0.01
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