Efrain Siller, Ph.D. - Related publications

Apoptosis, Calcium, Neurodegeneration, Gaseous Neurotransmission
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Kraus A, Weskamp M, Zierles J, Balzer M, Busch R, Eisfeld J, Lambertz J, Nowaczyk MM, Narberhaus F. Arginine-Rich Small Proteins with a Domain of Unknown Function, DUF1127, Play a Role in Phosphate and Carbon Metabolism of Agrobacterium tumefaciens. Journal of Bacteriology. 202. PMID 33093235 DOI: 10.1128/JB.00309-20   
2020 Iqbal S, Pérez-Palma E, Jespersen JB, May P, Hoksza D, Heyne HO, Ahmed SS, Rifat ZT, Rahman MS, Lage K, Palotie A, Cottrell JR, Wagner FF, Daly MJ, Campbell AJ, et al. Comprehensive characterization of amino acid positions in protein structures reveals molecular effect of missense variants. Proceedings of the National Academy of Sciences of the United States of America. PMID 33106425 DOI: 10.1073/pnas.2002660117   
2020 Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU. Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2). Genomics & Informatics. 18: e28. PMID 33017872 DOI: 10.5808/GI.2020.18.3.e28   
2020 Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU. Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2). Genomics & Informatics. 18: e28. PMID 33017872 DOI: 10.5808/GI.2020.18.3.e28   
2020 Ayers JI, Borchelt DR. Phenotypic diversity in ALS and the role of poly-conformational protein misfolding. Acta Neuropathologica. PMID 32930869 DOI: 10.1007/s00401-020-02222-x   
2020 Nash MA. Single-molecule and Single-cell Approaches in Molecular Bioengineering. Chimia. 74: 704-709. PMID 32958108 DOI: 10.2533/chimia.2020.704   
2020 Lipsh-Sokolik R, Listov D, Fleishman SJ. The AbDesign computational pipeline for modular backbone assembly and design of binders and enzymes. Protein Science : a Publication of the Protein Society. PMID 33040418 DOI: 10.1002/pro.3970   
2020 Määttä TA, Rettel M, Sridharan S, Helm D, Kurzawa N, Stein F, Savitski MM. Aggregation and disaggregation features of the human proteome. Molecular Systems Biology. 16: e9500. PMID 33022891 DOI: 10.15252/msb.20209500   
2020 Shroff R, Cole AW, Diaz DJ, Morrow BR, Donnell I, Annapareddy A, Gollihar J, Ellington AD, Thyer R. Discovery of Novel Gain-of-Function Mutations Guided by Structure-Based Deep Learning. Acs Synthetic Biology. PMID 33064458 DOI: 10.1021/acssynbio.0c00345   
2020 Badal VD, Kundrotas PJ, Vakser IA. Text mining for modeling of protein complexes enhanced by machine learning. Bioinformatics (Oxford, England). PMID 32960948 DOI: 10.1093/bioinformatics/btaa823   
2020 Jha K, Saha S. Amalgamation of 3D structure and sequence information for protein-protein interaction prediction. Scientific Reports. 10: 19171. PMID 33154416 DOI: 10.1038/s41598-020-75467-x   
2020 Johnston HE, Samant RS. Alternative systems for misfolded protein clearance: life beyond the proteasome. The Febs Journal. PMID 33135311 DOI: 10.1111/febs.15617   
2020 Zhang J, Lv L, Lu D, Kong D, Al-Alashaari MAA, Zhao X. Variable selection from a feature representing protein sequences: a case of classification on bacterial type IV secreted effectors. Bmc Bioinformatics. 21: 480. PMID 33109082 DOI: 10.1186/s12859-020-03826-6   
2020 Tan F, Sun N, Zhang L, Wu J, Xiao S, Tan Q, Uversky VN, Liu Y. Functional characterization of an unknown soybean intrinsically disordered protein in vitro and in Escherichia coli. International Journal of Biological Macromolecules. PMID 33137381 DOI: 10.1016/j.ijbiomac.2020.10.211   
2020 Qianzhu H, Welegedara AP, Williamson H, McGrath AE, Mahawaththa MC, Dixon NE, Otting G, Huber T. Genetic Encoding of -Pentafluorosulfanyl Phenylalanine: A Highly Hydrophobic and Strongly Electronegative Group for Stable Protein Interactions. Journal of the American Chemical Society. PMID 32975937 DOI: 10.1021/jacs.0c07976   
2020 Umstead A, Soliman AS, Lamp J, Vega IE. Validation of recombinant human protein purified from bacteria: an important step to increase scientific rigor. Analytical Biochemistry. 113999. PMID 33098768 DOI: 10.1016/j.ab.2020.113999   
2020 Wang L, Xu X, Jiang Z, You Q. Modulation of protein fate decision by small molecules: targeting molecular chaperone machinery. Acta Pharmaceutica Sinica. B. 10: 1904-1925. PMID 33163343 DOI: 10.1016/j.apsb.2020.01.018   
2020 Sun JL, Li JY, Wang MJ, Song ZT, Liu JX. Protein Quality Control in Plant Organelles: Current Progress and Future Perspectives. Molecular Plant. PMID 33137518 DOI: 10.1016/j.molp.2020.10.011   
2020 Kang TH, Seong BL. Solubility, Stability, and Avidity of Recombinant Antibody Fragments Expressed in Microorganisms. Frontiers in Microbiology. 11: 1927. PMID 33101218 DOI: 10.3389/fmicb.2020.01927   
2020 Lyu X, Liu Y. Nonoptimal Codon Usage Is Critical for Protein Structure and Function of the Master General Amino Acid Control Regulator CPC-1. Mbio. 11. PMID 33051373 DOI: 10.1128/mBio.02605-20   
2020 Banerjee S. Effect of glyoxal and 1-methylisatin on stress-induced fibrillation of Hen Egg White Lysozyme: Insight into the anti-amyloidogenic property of the compounds with possible therapeutic implications. International Journal of Biological Macromolecules. PMID 33065156 DOI: 10.1016/j.ijbiomac.2020.10.017   
2020 Samoudi M, Kuo CC, Robinson CM, Shams-Ud-Doha K, Schinn SM, Kol S, Weiss L, Petersen Bjorn S, Voldborg BG, Rosa Campos A, Lewis NE. In situ detection of protein interactions for recombinant therapeutic enzymes. Biotechnology and Bioengineering. PMID 33169829 DOI: 10.1002/bit.27621   
2020 Agostino M. Comprehensive analysis of carbohydrate-protein recognition in the Protein Data Bank. Carbohydrate Research. 498: 108180. PMID 33096507 DOI: 10.1016/j.carres.2020.108180   
2020 Di Rienzo L, Milanetti E, Testi C, Montemiglio LC, Baiocco P, Boffi A, Ruocco G. A novel strategy for molecular interfaces optimization: The case of Ferritin-Transferrin receptor interaction. Computational and Structural Biotechnology Journal. 18: 2678-2686. PMID 33101606 DOI: 10.1016/j.csbj.2020.09.020   
2020 Fiorentini F, Esposito D, Rittinger K. Does it take two to tango? RING domain self-association and activity in TRIM E3 ubiquitin ligases. Biochemical Society Transactions. PMID 33170204 DOI: 10.1042/BST20200383   
2020 Asher DM, Belay E, Bigio E, Brandner S, Brubaker SA, Caughey B, Clark B, Damon I, Diamond M, Freund M, Hyman BT, Jucker M, Keene CD, Lieberman AP, Mackiewicz M, et al. Risk of Transmissibility From Neurodegenerative Disease-Associated Proteins: Experimental Knowns and Unknowns. Journal of Neuropathology and Experimental Neurology. PMID 33000167 DOI: 10.1093/jnen/nlaa109   
2020 Xiong W, Chen X, Zhu C, Zhang J, Lan T, Liu L, Mo B, Chen X. Arabidopsis paralogous genes RPL23aA and RPL23aB encode functionally equivalent proteins. Bmc Plant Biology. 20: 463. PMID 33032526 DOI: 10.1186/s12870-020-02672-1   
2020 Gaynor AS, Chen W. Conditional Protein Rescue by Binding-Induced Protective Shielding. Acs Synthetic Biology. PMID 33025786 DOI: 10.1021/acssynbio.0c00367   
2020 Wang SK, Zhang H, Hu CY, Liu JF, Chadha S, Kim JW, Simmer JP, Hu JCC. and Autosomal Dominant Hypocalcified Amelogenesis Imperfecta. Journal of Dental Research. 22034520962731. PMID 33034243 DOI: 10.1177/0022034520962731   
2020 Pritišanac I, Zarin T, Forman-Kay JD, Moses AM. Whence Blobs? Phylogenetics of functional protein condensates. Biochemical Society Transactions. PMID 32985656 DOI: 10.1042/BST20200355   
2020 Miranzadeh Mahabadi H, Taghibiglou C. Cellular Prion Protein (PrPc): Putative Interacting Partners and Consequences of the Interaction. International Journal of Molecular Sciences. 21. PMID 32992764 DOI: 10.3390/ijms21197058   
2020 Wegner LH, Hao Z. A quantitative approach relating emergent features of complex traits to protein expression. Progress in Biophysics and Molecular Biology. PMID 33035591 DOI: 10.1016/j.pbiomolbio.2020.10.002   
2020 Zhang H, Wang B, Li B, Lin Y, Yang H, Ding D, Xue Y, Tang J. Comparative proteomic analysis of mitochondrial proteins from maize CMS-C sterile, maintainer and restorer anthers. The Plant Genome. 13: e20022. PMID 33016607 DOI: 10.1002/tpg2.20022   
2020 Zhao B, Zhang Z, Chen X, Shen Y, Qin Y, Yang X, Xing Z, Zhang S, Long X, Zhang Y, An S, Wu H, Qi Y. The important roles of protein SUMOylation in the occurrence and development of leukemia and clinical implications. Journal of Cellular Physiology. PMID 33151565 DOI: 10.1002/jcp.30143   
2020 Mebratu YA, Negasi ZH, Dutta S, Rojas-Quintero J, Tesfaigzi Y. Adaptation of Proteasomes and Lysosomes to Cellular Environments. Cells. 9. PMID 33019542 DOI: 10.3390/cells9102221   
2020 Veith PD, Gorasia DG, Reynolds EC. Towards defining the outer membrane proteome of Porphyromonas gingivalis. Molecular Oral Microbiology. PMID 33124778 DOI: 10.1111/omi.12320   
2020 Trueba-Santiso A, Wasmund K, Soder-Walz JM, Marco-Urrea E, Adrian L. Genome Sequence, Proteome Profile, and Identification of a Multiprotein Reductive Dehalogenase Complex in Strain BRE15M. Journal of Proteome Research. PMID 32975419 DOI: 10.1021/acs.jproteome.0c00569   
2020 Li J, Gao M, Gabriel DW, Liang W, Song L. Secretome-Wide Analysis of Lysine Acetylation in f. sp. Provides Novel Insights Into Infection-Related Proteins. Frontiers in Microbiology. 11: 559440. PMID 33013791 DOI: 10.3389/fmicb.2020.559440   
2020 Aponte-Ubillus JJ, Barajas D, Sterling H, Aghajanirefah A, Bardliving C, Peltier J, Shamlou P, Roy M, Gold D. Proteome profiling and vector yield optimization in a recombinant adeno-associated virus-producing yeast model. Microbiologyopen. e1136. PMID 33166081 DOI: 10.1002/mbo3.1136   
2020 Stecker RA, Moon JM, Russo TJ, Ratliff KM, Mumford PW, Jäger R, Purpura M, Kerksick CM. GBI-30, 6086 improves amino acid absorption from milk protein. Nutrition & Metabolism. 17: 93. PMID 33110439 DOI: 10.1186/s12986-020-00515-2   
2020 Liu S, Kang Y, Zhang C, Lou Y, Li X, Lu L, Qi Z, Jian H, Zhou H. Isobaric Tagging for Relative and Absolute Protein Quantification (iTRAQ)-Based Quantitative Proteomics Analysis of Differentially Expressed Proteins 1 Week After Spinal Cord Injury in a Rat Model. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 26: e924266. PMID 33144554 DOI: 10.12659/MSM.924266   
2020 Walker SP, Yallapragada VVB, Tangney M. Arming Yourself for The In Silico Protein Design Revolution. Trends in Biotechnology. PMID 33139074 DOI: 10.1016/j.tibtech.2020.10.003   
2020 Panda A, Rangani J, Parida AK. Comprehensive proteomic analysis revealing multifaceted regulatory network of the xero-halophyte Haloxylon salicornicum involved in salt tolerance. Journal of Biotechnology. 324: 143-161. PMID 33068696 DOI: 10.1016/j.jbiotec.2020.10.011   
2020 Arooj M, Shehadi I, Nassab CN, Mohamed AA. Physicochemical stability study of protein-benzoic acid complexes using molecular dynamics simulations. Amino Acids. 52: 1353-1362. PMID 33006112 DOI: 10.1007/s00726-020-02897-2   
2020 Tomaszewski T, DeVries RS, Dong M, Bhatia G, Norsworthy MD, Zheng X, Caetano-Anollés G. New Pathways of Mutational Change in SARS-CoV-2 Proteomes Involve Regions of Intrinsic Disorder Important for Virus Replication and Release. Evolutionary Bioinformatics Online. 16: 1176934320965149. PMID 33149541 DOI: 10.1177/1176934320965149   
2020 Vitorino R, Guedes S, Trindade F, Correia I, Moura G, Carvalho P, Santos M, Amado F. sequencing of proteins by mass spectrometry. Expert Review of Proteomics. PMID 33016158 DOI: 10.1080/14789450.2020.1831387   
2020 Diaz N, Lico C, Capodicasa C, Baschieri S, Dessì D, Benvenuto E, Fiori PL, Rappelli P. Production and Functional Characterization of a Recombinant Predicted Pore-Forming Protein (TVSAPLIP12) of in Plants. Frontiers in Cellular and Infection Microbiology. 10: 581066. PMID 33117734 DOI: 10.3389/fcimb.2020.581066   
2020 Xue W, Zhang SX, He WT, Hong JY, Jiang LL, Hu HY. Domain interactions reveal auto-inhibition of the deubiquitinating enzyme USP19 and its activation by HSP90 in modulation of huntingtin aggregation. The Biochemical Journal. PMID 33094816 DOI: 10.1042/BCJ20200536   
2020 Joshi AG, Harini K, Meenakshi I, Shafi KM, Pasha SN, Mahita J, Sajeevan RS, Karpe SD, Ghosh P, Nitish S, Gandhimathi A, Mathew OK, Prasanna SH, Malini M, Mutt E, et al. A knowledge-driven protocol for prediction of proteins of interest with an emphasis on biosynthetic pathways. Methodsx. 7: 101053. PMID 33024710 DOI: 10.1016/j.mex.2020.101053   
2020 Kumar A, Dubey R, Singhai S, Konar AD, Basu A. Structural Characterization with Light Scattering: A Tool for Rationally designing Protein Formulations. Analytical Biochemistry. 113979. PMID 33035463 DOI: 10.1016/j.ab.2020.113979