Alexis Scherl, Ph.D. - Publications

Yeshiva University, New York, NY, United States 

68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Banchereau R, Chitre AS, Scherl A, Wu TD, Patil NS, de Almeida P, Kadel Iii EE, Madireddi S, Au-Yeung A, Takahashi C, Chen YJ, Modrusan Z, McBride J, Nersesian R, El-Gabry EA, et al. Intratumoral CD103+ CD8+ T cells predict response to PD-L1 blockade. Journal For Immunotherapy of Cancer. 9. PMID 33827905 DOI: 10.1136/jitc-2020-002231  0.01
2018 Manzanillo P, Mouchess M, Ota N, Dai B, Ichikawa R, Wuster A, Haley B, Alvarado G, Kwon Y, Caothien R, Roose-Girma M, Warming S, McKenzie BS, Keir ME, Scherl A, et al. Inflammatory Bowel Disease Susceptibility Gene Regulates Intestinal Epithelial Permeability. Immunohorizons. 2: 164-171. PMID 31022698 DOI: 10.4049/immunohorizons.1800027  0.01
2018 Ichikawa R, Lamb CA, Eastham-Anderson J, Scherl A, Raffals L, Faubion WA, Bennett MR, Long AK, Mansfield JC, Kirby JA, Keir ME. AlphaE Integrin Expression Is Increased in the Ileum Relative to the Colon and Unaffected by Inflammation. Journal of Crohn's & Colitis. PMID 29912405 DOI: 10.1093/ecco-jcc/jjy084  0.01
2016 Colombel JF, Keir ME, Scherl A, Zhao R, de Hertogh G, Faubion WA, Lu TT. Discrepancies between patient-reported outcomes, and endoscopic and histological appearance in UC. Gut. PMID 27590995 DOI: 10.1136/gutjnl-2016-312307  1
2016 Marchal-Bressenot A, Scherl A, Salleron J, Peyrin-Biroulet L. A practical guide to assess the Nancy histological index for UC. Gut. PMID 27566129 DOI: 10.1136/Gutjnl-2016-312722  0.01
2016 Cameron DB, Scherl A, Fitzgerald T, Ozgediz D. Colonic Diverticulitis in a 19-Year-Old Boy With Juvenile Idiopathic Arthritis: Surgical Implications of Chronic Immunosuppression. Journal of Pediatric Gastroenterology and Nutrition. 62: e15-e17. PMID 26799279 DOI: 10.1097/Mpg.0000000000000378  1
2015 Campos A, Díaz R, Martínez-Bartolomé S, Sierra J, Gallardo O, Sabidó E, López-Lucendo M, Ignacio Casal J, Pasquarello C, Scherl A, Chiva C, Borras E, Odena A, Elortza F, Azkargorta M, et al. Multicenter experiment for quality control of peptide-centric LC-MS/MS analysis - A longitudinal performance assessment with nLC coupled to orbitrap MS analyzers. Journal of Proteomics. PMID 25982386 DOI: 10.1016/j.jprot.2015.05.012  1
2015 Graça DC, Hartmer R, Jabs W, Beris P, Clerici L, Stoermer C, Samii K, Hochstrasser D, Tsybin YO, Scherl A, Lescuyer P. Identification of hemoglobin variants by top-down mass spectrometry using selected diagnostic product ions. Analytical and Bioanalytical Chemistry. 407: 2837-45. PMID 25753013 DOI: 10.1007/s00216-015-8525-5  0.01
2015 Scherl A. Clinical protein mass spectrometry. Methods (San Diego, Calif.). 81: 3-14. PMID 25752846 DOI: 10.1016/j.ymeth.2015.02.015  0.01
2015 Loo JM, Scherl A, Nguyen A, Man FY, Weinberg E, Zeng Z, Saltz L, Paty PB, Tavazoie SF. Extracellular metabolic energetics can promote cancer progression. Cell. 160: 393-406. PMID 25601461 DOI: 10.1016/j.cell.2014.12.018  1
2014 von Tobel JS, Antinori P, Zurich MG, Rosset R, Aschner M, Glück F, Scherl A, Monnet-Tschudi F. Repeated exposure to Ochratoxin A generates a neuroinflammatory response, characterized by neurodegenerative M1 microglial phenotype. Neurotoxicology. 44: 61-70. PMID 24792326 DOI: 10.1016/J.Neuro.2014.04.005  0.01
2014 Nicholson J, Scherl A, Way L, Blackburn EA, Walkinshaw MD, Ball KL, Hupp TR. A systems wide mass spectrometric based linear motif screen to identify dominant in-vivo interacting proteins for the ubiquitin ligase MDM2. Cellular Signalling. 26: 1243-57. PMID 24583282 DOI: 10.1016/j.cellsig.2014.02.011  1
2014 Sandström von Tobel J, Zoia D, Althaus J, Antinori P, Mermoud J, Pak HS, Scherl A, Monnet-Tschudi F. Immediate and delayed effects of subchronic Paraquat exposure during an early differentiation stage in 3D-rat brain cell cultures. Toxicology Letters. 230: 188-97. PMID 24521700 DOI: 10.1016/j.toxlet.2014.02.001  1
2014 Steiner C, Ducret A, Tille JC, Thomas M, McKee TA, Rubbia-Brandt L, Scherl A, Lescuyer P, Cutler P. Applications of mass spectrometry for quantitative protein analysis in formalin-fixed paraffin-embedded tissues. Proteomics. 14: 441-51. PMID 24339433 DOI: 10.1002/pmic.201300311  1
2014 François P, Scherl A, Hochstrasser D, Schrenzel J. Proteomic approach to investigate pathogenicity and metabolism of methicillin-resistant Staphylococcus aureus. Methods in Molecular Biology (Clifton, N.J.). 1085: 231-50. PMID 24085700 DOI: 10.1007/978-1-62703-664-1_14  0.01
2013 Apcher S, Millot G, Daskalogianni C, Scherl A, Manoury B, Fåhraeus R. Translation of pre-spliced RNAs in the nuclear compartment generates peptides for the MHC class I pathway. Proceedings of the National Academy of Sciences of the United States of America. 110: 17951-6. PMID 24082107 DOI: 10.1073/pnas.1309956110  0.01
2013 Pak H, Nikitin F, Gluck F, Lisacek F, Scherl A, Muller M. Clustering and filtering tandem mass spectra acquired in data-independent mode. Journal of the American Society For Mass Spectrometry. 24: 1862-71. PMID 24006250 DOI: 10.1007/s13361-013-0720-z  1
2013 Sajic T, Hainard A, Scherl A, Wohlwend A, Negro F, Sanchez JC, Szanto I. STAT6 promotes bi-directional modulation of PKM2 in liver and adipose inflammatory cells in rosiglitazone-treated mice. Scientific Reports. 3: 2350. PMID 23917405 DOI: 10.1038/srep02350  0.01
2013 Acosta-Martin AE, Graça DC, Antinori P, Clerici L, Hartmer R, Meyer M, Hochstrasser D, Samii K, Lescuyer P, Scherl A. Quantitative mass spectrometry analysis of intact hemoglobin A2 by precursor ion isolation and detection. Analytical Chemistry. 85: 7971-5. PMID 23883289 DOI: 10.1021/ac401782t  0.01
2013 Gray TA, Murray E, Nowicki MW, Remnant L, Scherl A, Muller P, Vojtesek B, Hupp TR. Development of a fluorescent monoclonal antibody-based assay to measure the allosteric effects of synthetic peptides on self-oligomerization of AGR2 protein. Protein Science : a Publication of the Protein Society. 22: 1266-78. PMID 23780840 DOI: 10.1002/pro.2299  0.01
2013 Bouchal P, Dvorakova M, Scherl A, Garbis SD, Nenutil R, Vojtesek B. Intact protein profiling in breast cancer biomarker discovery: protein identification issue and the solutions based on 3D protein separation, bottom-up and top-down mass spectrometry. Proteomics. 13: 1053-8. PMID 23303686 DOI: 10.1002/Pmic.201200121  1
2013 Gluck F, Hoogland C, Antinori P, Robin X, Nikitin F, Zufferey A, Pasquarello C, Fétaud V, Dayon L, Müller M, Lisacek F, Geiser L, Hochstrasser D, Sanchez JC, Scherl A. EasyProt--an easy-to-use graphical platform for proteomics data analysis. Journal of Proteomics. 79: 146-60. PMID 23277275 DOI: 10.1016/j.jprot.2012.12.012  0.01
2013 Lehmann S, Hoofnagle A, Hochstrasser D, Brede C, Glueckmann M, Cocho JA, Ceglarek U, Lenz C, Vialaret J, Scherl A, Hirtz C. Quantitative Clinical Chemistry Proteomics (qCCP) using mass spectrometry: general characteristics and application. Clinical Chemistry and Laboratory Medicine : Cclm / Fescc. 51: 919-35. PMID 23183755 DOI: 10.1515/cclm-2012-0723  0.01
2013 Scherl A. Dramatika období "Sturm und Drang" ve Stavovském divadle 1783-1848 Divadelni Revue. 24: 143-148.  0.01
2012 Scherl A, Dethleffsen K, Meyer M. Interactive knowledge networks for interdisciplinary course navigation within Moodle. Advances in Physiology Education. 36: 284-97. PMID 23209009 DOI: 10.1152/advan.00086.2012  0.01
2012 Coelho Graça D, Lescuyer P, Clerici L, Tsybin YO, Hartmer R, Meyer M, Samii K, Hochstrasser DF, Scherl A. Electron transfer dissociation mass spectrometry of hemoglobin on clinical samples. Journal of the American Society For Mass Spectrometry. 23: 1750-6. PMID 22869297 DOI: 10.1007/s13361-012-0446-3  0.01
2012 Scherl A. The development of theatre in Bohemia during the enlightenment | Uvažování o vývoji divadla v českých zemích v době osvícenství Divadelni Revue. 23: 31-38.  0.01
2011 Ahrné E, Ohta Y, Nikitin F, Scherl A, Lisacek F, Müller M. An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates. Proteomics. 11: 4085-95. PMID 21898822 DOI: 10.1002/pmic.201000665  0.01
2011 Kistler AD, Siwy J, Breunig F, Jeevaratnam P, Scherl A, Mullen W, Warnock DG, Wanner C, Hughes DA, Mischak H, Wüthrich RP, Serra AL. A distinct urinary biomarker pattern characteristic of female Fabry patients that mirrors response to enzyme replacement therapy. Plos One. 6: e20534. PMID 21698285 DOI: 10.1371/journal.pone.0020534  1
2011 Priego-Capote F, Ramirez-Boo M, Hoogland C, Scherl A, Mueller M, Lisacek F, Sanchez JC. Human hemolysate glycated proteome. Analytical Chemistry. 83: 5673-80. PMID 21630644 DOI: 10.1021/ac200864b  0.01
2011 Fischer A, Yang SJ, Bayer AS, Vaezzadeh AR, Herzig S, Stenz L, Girard M, Sakoulas G, Scherl A, Yeaman MR, Proctor RA, Schrenzel J, François P. Daptomycin resistance mechanisms in clinically derived Staphylococcus aureus strains assessed by a combined transcriptomics and proteomics approach. The Journal of Antimicrobial Chemotherapy. 66: 1696-711. PMID 21622973 DOI: 10.1093/jac/dkr195  0.01
2011 Nguyen-Lefebvre AT, Gonin-Giraud S, Scherl A, Arboit P, Granger L, Sanchez JC, Diaz JJ, Gandrillon O, Madjar JJ. Identification of human, rat and chicken ribosomal proteins by a combination of two-dimensional polyacrylamide gel electrophoresis and mass spectrometry. Journal of Proteomics. 74: 167-85. PMID 21055487 DOI: 10.1016/j.jprot.2010.10.007  0.01
2010 Dayon L, Turck N, Scherl A, Hochstrasser DF, Burkhard PR, Sanchez JC. From relative to absolute quantification of tryptic peptides with tandem mass tags: application to cerebrospinal fluid. Chimia. 64: 132-5. PMID 21140904 DOI: 10.2533/chimia.2010.132  0.01
2010 Tiberti N, Hainard A, Lejon V, Robin X, Ngoyi DM, Turck N, Matovu E, Enyaru J, Ndung'u JM, Scherl A, Dayon L, Sanchez JC. Discovery and verification of osteopontin and Beta-2-microglobulin as promising markers for staging human African trypanosomiasis. Molecular & Cellular Proteomics : McP. 9: 2783-95. PMID 20724469 DOI: 10.1074/mcp.M110.001008  0.01
2010 Kim JH, Stevens RC, MacCoss MJ, Goodlett DR, Scherl A, Richter RJ, Suzuki SM, Furlong CE. Identification and characterization of biomarkers of organophosphorus exposures in humans. Advances in Experimental Medicine and Biology. 660: 61-71. PMID 20221871 DOI: 10.1007/978-1-60761-350-3_7  1
2010 Dayon L, Turck N, Kienle S, Schulz-Knappe P, Hochstrasser DF, Scherl A, Sanchez JC. Isobaric tagging-based selection and quantitation of cerebrospinal fluid tryptic peptides with reporter calibration curves. Analytical Chemistry. 82: 848-58. PMID 20058875 DOI: 10.1021/ac901854k  1
2010 Priego-Capote F, Scherl A, Müller M, Waridel P, Lisacek F, Sanchez JC. Glycation isotopic labeling with 13C-reducing sugars for quantitative analysis of glycated proteins in human plasma. Molecular & Cellular Proteomics : McP. 9: 579-92. PMID 19955080 DOI: 10.1074/mcp.M900439-MCP200  0.01
2010 Dayon L, Pasquarello C, Hoogland C, Sanchez JC, Scherl A. Combining low- and high-energy tandem mass spectra for optimized peptide quantification with isobaric tags. Journal of Proteomics. 73: 769-77. PMID 19903544 DOI: 10.1016/j.jprot.2009.10.015  0.01
2010 François P, Scherl A, Hochstrasser D, Schrenzel J. Proteomic approaches to study Staphylococcus aureus pathogenesis. Journal of Proteomics. 73: 701-8. PMID 19879388 DOI: 10.1016/j.jprot.2009.10.007  0.01
2009 Tsai YS, Scherl A, Shaw JL, MacKay CL, Shaffer SA, Langridge-Smith PR, Goodlett DR. Precursor ion independent algorithm for top-down shotgun proteomics. Journal of the American Society For Mass Spectrometry. 20: 2154-66. PMID 19773183 DOI: 10.1016/J.Jasms.2009.07.024  1
2009 Panchaud A, Scherl A, Shaffer SA, von Haller PD, Kulasekara HD, Miller SI, Goodlett DR. Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean. Analytical Chemistry. 81: 6481-8. PMID 19572557 DOI: 10.1021/Ac900888S  1
2008 Singh P, Shaffer SA, Scherl A, Holman C, Pfuetzner RA, Larson Freeman TJ, Miller SI, Hernandez P, Appel RD, Goodlett DR. Characterization of protein cross-links via mass spectrometry and an open-modification search strategy. Analytical Chemistry. 80: 8799-806. PMID 18947195 DOI: 10.1021/Ac801646F  1
2008 Scherl A, Tsai YS, Shaffer SA, Goodlett DR. Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses. Proteomics. 8: 2791-7. PMID 18655048 DOI: 10.1002/Pmic.200800045  1
2008 Scherl A, Shaffer SA, Taylor GK, Hernandez P, Appel RD, Binz PA, Goodlett DR. On the benefits of acquiring peptide fragment ions at high measured mass accuracy. Journal of the American Society For Mass Spectrometry. 19: 891-901. PMID 18417358 DOI: 10.1016/J.Jasms.2008.02.005  1
2008 Scherl A, Shaffer SA, Taylor GK, Kulasekara HD, Miller SI, Goodlett DR. Genome-specific gas-phase fractionation strategy for improved shotgun proteomic profiling of proteotypic peptides. Analytical Chemistry. 80: 1182-91. PMID 18211032 DOI: 10.1021/Ac701680F  1
2008 Vaezzadeh AR, Zimmermann-Ivol CG, Deshusses J, Scherl A, Hochstrasser DF. IEF Analysis of Peptides for Biomarkers Discovery Clinical Proteomics: From Diagnosis to Therapy. 61-71. DOI: 10.1002/9783527622153.ch5  0.01
2007 Francois P, Scherl A, Hochstrasser D, Schrenzel J. Proteomic approach to investigate MRSA. Methods in Molecular Biology (Clifton, N.J.). 391: 179-99. PMID 18025678 DOI: 10.1007/978-1-59745-468-1_14  0.01
2006 Scherl A, François P, Charbonnier Y, Deshusses JM, Koessler T, Huyghe A, Bento M, Stahl-Zeng J, Fischer A, Masselot A, Vaezzadeh A, Gallé F, Renzoni A, Vaudaux P, Lew D, et al. Exploring glycopeptide-resistance in Staphylococcus aureus: a combined proteomics and transcriptomics approach for the identification of resistance-related markers. Bmc Genomics. 7: 296. PMID 17121677 DOI: 10.1186/1471-2164-7-296  0.01
2006 Nunn BL, Shaffer SA, Scherl A, Gallis B, Wu M, Miller SI, Goodlett DR. Comparison of a Salmonella typhimurium proteome defined by shotgun proteomics directly on an LTQ-FT and by proteome pre-fractionation on an LCQ-DUO. Briefings in Functional Genomics & Proteomics. 5: 154-68. PMID 16798750 DOI: 10.1093/Bfgp/Ell024  1
2006 Scherl A, Sanchez JC, Hochstrasser DF. Challenges in the overall analysis of microbial proteomes Complexus. 2: 79-86. DOI: 10.1159/000089985  1
2005 Li J, Scherl A, Medina F, Frank PG, Kitsis RN, Tanowitz HB, Sotgia F, Lisanti MP. Impaired phagocytosis in caveolin-1 deficient macrophages. Cell Cycle (Georgetown, Tex.). 4: 1599-607. PMID 16205123 DOI: 10.4161/Cc.4.11.2117  1
2005 Scherl A, Zimmermann-Ivol CG, Di Dio J, Vaezzadeh AR, Binz PA, Amez-Droz M, Cochard R, Sanchez JC, Glückmann M, Hochstrasser DF. Gold coating of non-conductive membranes before matrix-assisted laser desorption/ionization tandem mass spectrometric analysis prevents charging effect. Rapid Communications in Mass Spectrometry : Rcm. 19: 605-10. PMID 15685683 DOI: 10.1002/rcm.1831  0.01
2005 Scherl A, François P, Bento M, Deshusses JM, Charbonnier Y, Converset V, Huyghe A, Walter N, Hoogland C, Appel RD, Sanchez JC, Zimmermann-Ivol CG, Corthals GL, Hochstrasser DF, Schrenzel J. Correlation of proteomic and transcriptomic profiles of Staphylococcus aureus during the post-exponential phase of growth. Journal of Microbiological Methods. 60: 247-57. PMID 15590099 DOI: 10.1016/j.mimet.2004.09.017  1
2005 Tiacci E, Orvietani PL, Bigerna B, Pucciarini A, Corthals GL, Pettirossi V, Martelli MP, Liso A, Benedetti R, Pacini R, Bolli N, Pileri S, Pulford K, Gambacorta M, Carbone A, ... ... Scherl A, et al. Tumor protein D52 (TPD52): a novel B-cell/plasma-cell molecule with unique expression pattern and Ca(2+)-dependent association with annexin VI. Blood. 105: 2812-20. PMID 15576473 DOI: 10.1182/blood-2004-07-2630  0.01
2004 Dugast-Darzacq C, Pirity M, Blanck JK, Scherl A, Schreiber-Agus N. Mxi1-SRalpha: a novel Mxi1 isoform with enhanced transcriptional repression potential. Oncogene. 23: 8887-99. PMID 15467743 DOI: 10.1038/Sj.Onc.1208107  0.01
2004 Sanchez JC, Guillaume E, Lescuyer P, Allard L, Carrette O, Scherl A, Burgess J, Corthals GL, Burkhard PR, Hochstrasser DF. Cystatin C as a potential cerebrospinal fluid marker for the diagnosis of Creutzfeldt-Jakob disease. Proteomics. 4: 2229-33. PMID 15274116 DOI: 10.1002/pmic.200300799  0.01
2004 Scherl A, Li JF, Cardiff RD, Schreiber-Agus N. Prostatic intraepithelial neoplasia and intestinal metaplasia in prostates of probasin-RAS transgenic mice. The Prostate. 59: 448-59. PMID 15065094 DOI: 10.1002/Pros.20020  0.01
2004 Scherl A, Francois P, Converset V, Bento M, Burgess JA, Sanchez JC, Hochstrasser DF, Schrenzel J, Corthals GL. Nonredundant mass spectrometry: a strategy to integrate mass spectrometry acquisition and analysis. Proteomics. 4: 917-27. PMID 15048974 DOI: 10.1002/pmic.200300673  1
2003 Carrette O, Demalte I, Scherl A, Yalkinoglu O, Corthals G, Burkhard P, Hochstrasser DF, Sanchez JC. A panel of cerebrospinal fluid potential biomarkers for the diagnosis of Alzheimer's disease. Proteomics. 3: 1486-94. PMID 12923774 DOI: 10.1002/pmic.200300470  0.01
2003 Deshusses JM, Burgess JA, Scherl A, Wenger Y, Walter N, Converset V, Paesano S, Corthals GL, Hochstrasser DF, Sanchez JC. Exploitation of specific properties of trifluoroethanol for extraction and separation of membrane proteins. Proteomics. 3: 1418-24. PMID 12923766 DOI: 10.1002/pmic.200300492  1
2002 Scherl A, Couté Y, Déon C, Callé A, Kindbeiter K, Sanchez JC, Greco A, Hochstrasser D, Diaz JJ. Functional proteomic analysis of human nucleolus. Molecular Biology of the Cell. 13: 4100-9. PMID 12429849 DOI: 10.1091/mbc.E02-05-0271  0.01
2002 Tissot JD, Sanchez JC, Vuadens F, Scherl A, Schifferli JA, Hochstrasser DF, Schneider P, Duchosal MA. IgM are associated to Sp alpha (CD5 antigen-like). Electrophoresis. 23: 1203-6. PMID 11981870 DOI: 10.1002/1522-2683(200204)23:7/8<1203::AID-ELPS1203>3.0.CO;2-1  0.01
2002 Scherl A, Couté Y, Déon C, Callé A, Kindbeiter K, Sanchez JC, Greco A, Hochstrasser D, Diaz JJ. Proteomic analysis of human nucleoli using tandem mass spectrometry Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 259-260.  0.01
1987 Williamson PE, Pigram CJ, Colwell JB, Scherl AS, Lockwood KL, Branson JC. Review of stratigraphy, structure, and hydrocarbon potential of Bass basin, Australia. American Association of Petroleum Geologists Bulletin. 71: 253-280.  1
1985 Williamson PE, Pigram CJ, Colwell JB, Scherl AS, Lockwood KL, Branson JC. PRE-EOCENE STRATIGRAPHY, STRUCTURE, AND PETROLEUM POTENTIAL OF THE BASS BASIN. Apea Journal. 25: 362-381.  1
1984 Etheridge MA, Branson JC, Falvey DA, Lockwood KL, Stuart-Smith PG, Scherl AS. Basin-forming structures and their relevance to hydrocarbon exploration in Bass Basin, southeastern Australia. Bmr Journal of Australian Geology & Geophysics. 9: 197-206.  1
1980 Scherl A. Experiences gained with Rheumasit in injuries | ERFAHRUNGEN MIT RHEUMASIT® BEI VERLETZUNGEN Therapiewoche. 30: 3280-3282.  0.01
1969 Scherl A. Introducing the Side Fund. Dental Economics - Oral Hygiene. 59: 23-6. PMID 5250649  0.01
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