Arun P. Wiita, Ph.D. - Related publications

Affiliations: 
Columbia University, New York, NY 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Avestan MS, Javidi A, Ganote LP, Brown JM, Stan G. Kinetic effects in directional proteasomal degradation of the green fluorescent protein. The Journal of Chemical Physics. 153: 105101. PMID 32933274 DOI: 10.1063/5.0015191   
2020 Josephson B, Fehl C, Isenegger PG, Nadal S, Wright TH, Poh AWJ, Bower BJ, Giltrap AM, Chen L, Batchelor-McAuley C, Roper G, Arisa O, Sap JBI, Kawamura A, Baldwin AJ, et al. Light-driven post-translational installation of reactive protein side chains. Nature. 585: 530-537. PMID 32968259 DOI: 10.1038/s41586-020-2733-7   
2020 Deng S, Marmorstein R. Protein N-Terminal Acetylation: Structural Basis, Mechanism, Versatility, and Regulation. Trends in Biochemical Sciences. PMID 32912665 DOI: 10.1016/j.tibs.2020.08.005   
2020 Lipsh-Sokolik R, Listov D, Fleishman SJ. The AbDesign computational pipeline for modular backbone assembly and design of binders and enzymes. Protein Science : a Publication of the Protein Society. PMID 33040418 DOI: 10.1002/pro.3970   
2020 Griffiths R, Smith FR, Long JE, Williams H, Layfield R, Mitchell N. Site-Selective Modification of Peptides and Proteins via Interception of Free Radical-Mediated Dechalcogenation. Angewandte Chemie (International Ed. in English). PMID 32893423 DOI: 10.1002/anie.202006260   
2020 Sharma S, Subramani S, Popa I. Does protein unfolding play a functional role in vivo? The Febs Journal. PMID 32761965 DOI: 10.1111/febs.15508   
2020 Krauskopf K, Lang K. Increasing the chemical space of proteins in living cells via genetic code expansion. Current Opinion in Chemical Biology. 58: 112-120. PMID 32911429 DOI: 10.1016/j.cbpa.2020.07.012   
2020 Elfageih R, Karyolaimos A, Kemp G, de Gier JW, von Heijne G, Kudva R. Cotranslational folding of alkaline phosphatase in the periplasm of Escherichia coli. Protein Science : a Publication of the Protein Society. PMID 32790204 DOI: 10.1002/pro.3927   
2020 Hofmann R, Akimoto G, Wucherpfennig TG, Zeymer C, Bode JW. Lysine acylation using conjugating enzymes for site-specific modification and ubiquitination of recombinant proteins. Nature Chemistry. PMID 32929246 DOI: 10.1038/s41557-020-0528-y   
2020 Jeong H, Vacanti NM. Systemic vitamin intake impacting tissue proteomes. Nutrition & Metabolism. 17: 73. PMID 32863845 DOI: 10.1186/s12986-020-00491-7   
2020 Jeong H, Vacanti NM. Systemic vitamin intake impacting tissue proteomes. Nutrition & Metabolism. 17: 73. PMID 32863845 DOI: 10.1186/s12986-020-00491-7   
2020 Li J, Chen J, An L, Yuan X, Yao L. Polyol and sugar osmolytes can shorten protein hydrogen bonds to modulate function. Communications Biology. 3: 528. PMID 32968183 DOI: 10.1038/s42003-020-01260-1   
2020 Li J, Chen J, An L, Yuan X, Yao L. Polyol and sugar osmolytes can shorten protein hydrogen bonds to modulate function. Communications Biology. 3: 528. PMID 32968183 DOI: 10.1038/s42003-020-01260-1   
2020 Ma Y, Lee CJ, Park JS. Strategies for Optimizing the Production of Proteins and Peptides with Multiple Disulfide Bonds. Antibiotics (Basel, Switzerland). 9. PMID 32858882 DOI: 10.3390/antibiotics9090541   
2020 Ren H. Genetically encoded selective cross-linkers and emerging applications. Biochemical Society Transactions. 48: 1807-1817. PMID 32657352 DOI: 10.1042/BST20200508   
2020 Zhou J, Li S, Leung KK, O'Donovan B, Zou JY, DeRisi JL, Wells JA. Deep profiling of protease substrate specificity enabled by dual random and scanned human proteome substrate phage libraries. Proceedings of the National Academy of Sciences of the United States of America. PMID 32973096 DOI: 10.1073/pnas.2009279117   
2020 Bosch JA, Chen CL, Perrimon N. Proximity-dependent labeling methods for proteomic profiling in living cells: An update. Wiley Interdisciplinary Reviews. Developmental Biology. e392. PMID 32909689 DOI: 10.1002/wdev.392   
2020 Tang P, Tan Z, Ehamparanathan V, Ren T, Hoffman L, Du C, Song Y, Tao L, Lewandowski A, Ghose S, Li ZJ, Liu S. Optimization and kinetic modeling of interchain disulfide bond reoxidation of monoclonal antibodies in bioprocesses. Mabs. 12: 1829336. PMID 33031716 DOI: 10.1080/19420862.2020.1829336   
2020 Brighty GJ, Botham RC, Li S, Nelson L, Mortenson DE, Li G, Morisseau C, Wang H, Hammock BD, Sharpless KB, Kelly JW. Using sulfuramidimidoyl fluorides that undergo sulfur(VI) fluoride exchange for inverse drug discovery. Nature Chemistry. PMID 32868886 DOI: 10.1038/s41557-020-0530-4   
2020 Knight M, Woolley R, Kwok A, Parsons S, Jones H, Gulacsy C, Phaal P, Kassaar O, Dawkins K, Rodriguez E, Marques A, Bowsher L, Wells SA, Watts A, van den Elsen JM, et al. Monoclonal antibody stability can be usefully monitored using the excitation-energy-dependent fluorescence edge-shift. The Biochemical Journal. PMID 32869839 DOI: 10.1042/BCJ20200580   
2020 Chen K, Pei D. Engineering Cell-Permeable Proteins through Insertion of Cell-Penetrating Motifs into Surface Loops. Acs Chemical Biology. PMID 32786266 DOI: 10.1021/acschembio.0c00593   
2020 Singhal K, Leib R, Matney R, Chen E, Wagh D, Coller J, Liu F, Chien A, Knudtson K, Martin R, Weis-Garcia F. New approaches to phosphoproteomics: Clinical scale characterization of the AKT/mTOR pathway targets. Journal of Biomolecular Techniques : Jbt. 31: S28-S29. PMID 32831744   
2020 Sigdel TK, Piehowski PD, Roy S, Liberto J, Hansen JR, Swensen AC, Zhao R, Zhu Y, Rashmi P, Schroeder A, Damm I, Sur S, Luo J, Yang Y, Qian WJ, ... , et al. Near-Single-Cell Proteomics Profiling of the Proximal Tubular and Glomerulus of the Normal Human Kidney. Frontiers in Medicine. 7: 499. PMID 33072769 DOI: 10.3389/fmed.2020.00499   
2020 Elayan H, Eckford AW, Adve R. Information Rates of Controlled Protein Interactions Using Terahertz Communication. Ieee Transactions On Nanobioscience. PMID 32886612 DOI: 10.1109/TNB.2020.3021825   
2020 Hackett WE, Zaia J. Calculating glycoprotein similarities from mass spectrometric data. Molecular & Cellular Proteomics : McP. PMID 32883803 DOI: 10.1074/mcp.R120.002223   
2020 Zheng T, Yang Y, Castañeda CA. Structure, dynamics and functions of UBQLNs: at the crossroads of protein quality control machinery. The Biochemical Journal. 477: 3471-3497. PMID 32965492 DOI: 10.1042/BCJ20190497   
2020 Chowdhury R, Grisewood MJ, Boorla VS, Yan Q, Pfleger BF, Maranas CD. IPRO+/-: Computational Protein Design Tool Allowing for Insertions and Deletions. Structure (London, England : 1993). PMID 32857964 DOI: 10.1016/j.str.2020.08.003   
2020 Guo C, Steinberg LK, Henderson JP, Gross ML. Organic Solvents for Enhanced Proteolysis of Stable Proteins for Hydrogen-Deuterium Exchange Mass Spectrometry. Analytical Chemistry. 92: 11553-11557. PMID 32867496 DOI: 10.1021/acs.analchem.0c02194   
2020 Garlick JM, Mapp AK. Selective Modulation of Dynamic Protein Complexes. Cell Chemical Biology. 27: 986-997. PMID 32783965 DOI: 10.1016/j.chembiol.2020.07.019   
2020 Rinschen MM, Saez-Rodriguez J. The tissue proteome in the multi-omic landscape of kidney disease. Nature Reviews. Nephrology. PMID 33028957 DOI: 10.1038/s41581-020-00348-5   
2020 Traenkle B, Segan S, Fagbadebo FO, Kaiser PD, Rothbauer U. A novel epitope tagging system to visualize and monitor antigens in live cells with chromobodies. Scientific Reports. 10: 14267. PMID 32868807 DOI: 10.1038/s41598-020-71091-x   
2020 Burns M, Rizvi SHM, Tsukahara Y, Pimentel DR, Luptak I, Hamburg NM, Matsui R, Bachschmid MM. Role of Glutaredoxin-1 and Glutathionylation in Cardiovascular Diseases. International Journal of Molecular Sciences. 21. PMID 32948023 DOI: 10.3390/ijms21186803   
2020 Shergalis A, Xue D, Gharbia FZ, Driks H, Shrestha B, Tanweer A, Cromer K, Ljungman M, Neamati N. Characterization of aminobenzylphenols as protein disulfide isomerase inhibitors in glioblastoma cell lines. Journal of Medicinal Chemistry. PMID 32830969 DOI: 10.1021/acs.jmedchem.0c00728   
2020 Cortés-Ríos J, Zárate AM, Figueroa JD, Medina J, Fuentes-Lemus E, Rodríguez-Fernández M, Aliaga M, López-Alarcón C. Protein quantification by bicinchoninic acid (BCA) assay follows complex kinetics and can be performed at short incubation times. Analytical Biochemistry. 113904. PMID 32800701 DOI: 10.1016/j.ab.2020.113904   
2020 Zhang X. Chemical Proteomics for Expanding the Druggability of Human Disease. Chembiochem : a European Journal of Chemical Biology. PMID 32964553 DOI: 10.1002/cbic.202000495   
2020 Chinnaraj M, Barrios DA, Frieden C, Heyduk T, Flaumenhaft R, Pozzi N. Bioorthogonal Chemistry Enables Single-Molecule FRET Measurements of Catalytically Active Protein Disulfide Isomerase. Chembiochem : a European Journal of Chemical Biology. PMID 32857455 DOI: 10.1002/cbic.202000537   
2020 Cohen M, Pignatti E, Dines M, Mory A, Ekhilevitch N, Kolodny R, Flück CE, Tiosano D. In Silico Structural and Biochemical Functional Analysis of a Novel Pathogenic Variant. International Journal of Molecular Sciences. 21. PMID 32824094 DOI: 10.3390/ijms21165857   
2020 Mirela-Bota P, Aguirre-Plans J, Meseguer A, Galletti C, Segura J, Planas-Iglesias J, Garcia-Garcia J, Guney E, Oliva B, Fernandez-Fuentes N. Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data. Journal of Molecular Biology. PMID 32976910 DOI: 10.1016/j.jmb.2020.09.015   
2020 Colant N, Melinek B, Teneb J, Goldrick S, Rosenberg W, Frank S, Bracewell DG. A rational approach to improving titer in Escherichia coli-based cell-free protein synthesis reactions. Biotechnology Progress. e3062. PMID 32761750 DOI: 10.1002/btpr.3062   
2020 Beamer LJ. Enzyme dysfunction at atomic resolution: Disease-associated variants of human phosphoglucomutase-1. Biochimie. PMID 32898648 DOI: 10.1016/j.biochi.2020.08.017   
2020 Hendler A, Akiva E, Sandhu M, Goldberg D, Arbely E, Jackson CJ, Aharoni A. Human SIRT1 multi-specificity is modulated by active-site vicinity substitutions during natural evolution. Molecular Biology and Evolution. PMID 32956445 DOI: 10.1093/molbev/msaa244   
2020 Sparkes EI, Kettles RA, Egedeuzu CS, Stephenson NL, Caslin SA, Tabatabaei Dakhili SY, Wong LS. Improved Production and Biophysical Analysis of Recombinant Silicatein-α. Biomolecules. 10. PMID 32825281 DOI: 10.3390/biom10091209   
2020 Wang B, Hao J, Pan N, Wang Z, Chen Y, Wan C. Identification and analysis of small proteins and short open reading frame encoded peptides in Hep3B cell. Journal of Proteomics. 103965. PMID 32891891 DOI: 10.1016/j.jprot.2020.103965   
2020 Vitorino R, Guedes S, Vitorino C, Ferreira R, Amado F, Van Eyk JE. Elucidating Citrullination by Mass Spectrometry and its role in Disease Pathogenesis. Journal of Proteome Research. PMID 32966086 DOI: 10.1021/acs.jproteome.0c00474   
2020 Singh A, Thakur M, Singh SK, Sharma LK, Chandra K. Exploring the effect of nsSNPs in human YPEL3 gene in cellular senescence. Scientific Reports. 10: 15301. PMID 32943700 DOI: 10.1038/s41598-020-72333-8   
2020 Albaugh BN, Denu JM. Catalysis by protein acetyltransferase Gcn5. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194627. PMID 32841743 DOI: 10.1016/j.bbagrm.2020.194627   
2020 Bhagawati M, Hoffmann S, Höffgen KS, Piehler J, Busch KB, Mootz HD. In Cellulo Protein Semi-Synthesis from Endogenous and Exogenous Fragments Using the Ultra-Fast Split Gp41-1 Intein. Angewandte Chemie (International Ed. in English). PMID 32777124 DOI: 10.1002/anie.202006822   
2020 Song K, Nho CW, Ha IJ, Kim YS. Cellular Target Proteome in Breast Cancer Cells of an Oplopane Sesquiterpenoid Isolated from . Journal of Natural Products. PMID 32881525 DOI: 10.1021/acs.jnatprod.0c00043   
2020 Liu J, Cheng R, Van Eps N, Wang N, Morizumi T, Ou WL, Klauser P, Rozovsky S, Ernst OP, Wang L. Genetically Encoded Quinone Methides Enabling Rapid, Site-specific, and Photo-controlled Protein Modification with Amine Reagents. Journal of the American Chemical Society. PMID 32915556 DOI: 10.1021/jacs.0c06820   
2020 Hu Z, Li H, Wang X, Ullah K, Xu G. Proteomic approaches for the profiling of ubiquitylation events and their applications in drug discovery. Journal of Proteomics. 103996. PMID 33017648 DOI: 10.1016/j.jprot.2020.103996