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Qianqian Zhu, Ph.D. - Publications

Institution:
State University of New York, Buffalo, Buffalo, NY, United States
Area:
mesoderm development, transcriptional regulatory elements
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Karaesmen E, Hahn T, Dile AJ, Rizvi AA, Wang J, Wang T, Haagenson MD, Preus L, Zhu Q, Liu Q, Yan L, Liu S, Haiman CA, Stram D, Pooler L, et al. Multiple functional variants in the region are pretransplant markers for risk of GVHD and infection deaths. Blood Advances. 3: 2512-2524. PMID 31455667 DOI: 10.1182/Bloodadvances.2019000075  0.302
2019 Zhu Q, Zhang J, Chen Y, Hu Q, Shen H, Huang RY, Liu Q, Kaur J, Long M, Battaglia S, Eng KH, Lele SB, Zsiros E, Villella J, Lugade A, et al. Whole-Exome Sequencing Of Ovarian Cancer Families Uncovers Putative Predisposition Genes. International Journal of Cancer. PMID 31265121 DOI: 10.1002/Ijc.32545  0.363
2019 Karaesmen E, Rizvi AA, Wang J, Sovic M, Zhu Q, Yan L, Preus L, Liu S, Stram D, Pooler L, Sheng X, Haiman C, Berg DVD, Webb A, Brock G, et al. Genome Wide Interaction Analysis Identifies Expression Quantitative Trait Loci Associated with Reduced Survival after Reduced Intensity Conditioning HLA-Matched Unrelated Donor Allogeneic Hematopoietic Cell Transplant Blood. 134: 4595-4595. DOI: 10.1182/Blood-2019-129182  0.316
2018 Zhu Q, Yan L, Liu Q, Zhang C, Wei L, Hu Q, Preus L, Clay-Gilmour AI, Onel K, Stram DO, Pooler L, Sheng X, Haiman CA, Zhu X, Spellman SR, et al. Exomechip Analyses Identify Genes Affecting Mortality after HLA-Matched Unrelated Donor Blood and Marrow Transplantation. Blood. PMID 29610366 DOI: 10.1182/Blood-2017-11-817973  0.34
2018 Karaesmen E, Hahn TE, Dile A, Rizvi A, Wang J, Wang T, Haagenson MD, Preus L, Zhu Q, Liu Q, Yan L, Liu S, Haiman C, Stram D, Pooler L, et al. Multiple Functional Donor Polymorphisms in IL1RL1 region Associate with Death Due to GvHD or Infection after Unrelated Donor Allogeneic Hematopoietic Stem Cell Transplantation (HCT) for AML and MDS Blood. 132: 312-312. DOI: 10.1182/Blood-2018-99-115276  0.303
2018 Wang J, Clay-Gilmour AI, Karaesmen E, Rizvi A, Zhu Q, Yan L, Preus L, Liu S, Stram D, Pooler L, Cheng X, Haiman C, Van Den Berg D, Webb A, Brock G, et al. Genome Wide Association Analyses Identify Pleiotropic Variants Associated with Acute Myeloid Leukemia (AML) and Myelodysplastic Syndrome (MDS) Susceptibility Blood. 132: 1500-1500. DOI: 10.1182/Blood-2018-99-110372  0.377
2018 Coignet MV, Zhu Q, Cox DG, Lunetta K, Bandera EV, Haiman C, Olshan A, Palmer J, Ambrosone C, Yao S. Abstract 226: Single variant and gene-based replication analysis of reproductive aging in African American women in the AMBER Consortium Cancer Research. 78: 226-226. DOI: 10.1158/1538-7445.Am2018-226  0.356
2017 Clay-Gilmour AI, Hahn T, Preus LM, Onel K, Skol A, Hungate E, Zhu Q, Haiman CA, Stram DO, Pooler L, Sheng X, Yan L, Liu Q, Hu Q, Liu S, et al. Genetic association with B-cell acute lymphoblastic leukemia in allogeneic transplant patients differs by age and sex. Blood Advances. 1: 1717-1728. PMID 29296818 DOI: 10.1182/Bloodadvances.2017006023  0.313
2017 Coignet MV, Zirpoli GR, Roberts MR, Khoury T, Bandera EV, Zhu Q, Yao S. Genetic variations, reproductive aging, and breast cancer risk in African American and European American women: The Women's Circle of Health Study. Plos One. 12: e0187205. PMID 29073238 DOI: 10.1371/Journal.Pone.0187205  0.312
2017 Karaesmen E, Rizvi AA, Preus L, McCarthy PL, Pasquini MC, Onel K, Zhu X, Spellman S, Haiman CA, Stram DO, Pooler L, Sheng X, Zhu Q, Yan L, Liu Q, et al. Replication and validation of genetic polymorphisms associated with survival after allogeneic blood or marrow transplant. Blood. PMID 28811306 DOI: 10.1182/Blood-2017-05-784637  0.389
2016 Zhu Q, Shepherd L, Lunetta KL, Yao S, Liu Q, Hu Q, Haddad SA, Sucheston-Campbell L, Bensen JT, Bandera EV, Rosenberg L, Liu S, Haiman CA, Olshan AF, Palmer JR, et al. Trans-ethnic follow-up of breast cancer GWAS hits using the preferential linkage disequilibrium approach. Oncotarget. PMID 27825120 DOI: 10.18632/Oncotarget.13075  0.312
2016 Zhang J, Yao S, Hu Q, Zhu Q, Liu S, Lunetta KL, Haddad SA, Yang N, Shen H, Hong CC, Sucheston-Campbell L, Ruiz-Narvaez EA, Bensen JT, Troester MA, Bandera EV, et al. Genetic variations in the Hippo signaling pathway and breast cancer risk in African American women in the AMBER Consortium. Carcinogenesis. PMID 27485598 DOI: 10.1093/Carcin/Bgw077  0.307
2016 Haddad SA, Ruiz-Narváez EA, Haiman CA, Sucheston-Campbell LE, Bensen JT, Zhu Q, Liu S, Yao S, Bandera EV, Rosenberg L, Olshan AF, Ambrosone CB, Palmer JR, Lunetta KL. An Exome-Wide Analysis of Low Frequency and Rare Variants in Relation to Risk of Breast Cancer in African American Women: the AMBER Consortium. Carcinogenesis. PMID 27267999 DOI: 10.1093/Carcin/Bgw067  0.34
2016 Karaesmen# E, Rizvi# A, Zhu Q, Yan L, Liu Q, Hu Q, Preus L, Clay AI, Liu S, Stram DO, Pooler LC, Sheng X, Haiman CA, Zhu X, Spellman SR, et al. Replication of Candidate SNP Survival Analyses and Gene-Based Tests of Association with Survival Outcomes after an Unrelated Donor Blood or Marrow Transplant: Results from the Discovery-BMT Study Blood. 128: 71-71. DOI: 10.1182/Blood.V128.22.71.71  0.377
2016 Zhu# Q, Yan# L, Liu Q, Hu Q, Preus L, Clay AI, Onel K, Stram DO, Pooler LC, Sheng X, Haiman CA, Zhu X, Spellman SR, Pasquini MC, McCarthy PL, et al. Exome Array Analyses Identify New Genes Influencing Survival Outcomes after HLA-Matched Unrelated Donor Blood and Marrow Transplantation Blood. 128: 518-518. DOI: 10.1182/Blood.V128.22.518.518  0.392
2016 Clay AI, Hahn T, Zhu Q, Yan L, Preus L, Stram DO, Haiman CA, Pooler LC, Sheng X, Onel K, Liu Q, Hu Q, Liu S, Zhu X, Spellman SR, et al. Exome Array Analyses Identify Low-Frequency Germline Variants Associated with Increased Risk of AML in a HLA-Matched Unrelated Donor Blood and Marrow Transplant Population Blood. 128: 42-42. DOI: 10.1182/Blood.V128.22.42.42  0.391
2016 Larsen VL, Barlow WE, Yang JJ, Zhu Q, Hutchins LF, Kadlubar SA, Albain KS, Livingston RB, Rae JM, Yeh I, Ravdin PM, Martino S, Lyss AP, Osborne CK, Hortobagyi GN, et al. Abstract 2032: Germline genetic variants in GATA3 and breast cancer treatment outcomes in SWOG 8897 trial Cancer Research. 76: 2032-2032. DOI: 10.1158/1538-7445.Am2016-2032  0.323
2015 Shen H, Blijlevens M, Yang N, Frangou C, Wilson KE, Xu B, Zhang Y, Zhang L, Morrison CD, Shepherd L, Hu Q, Zhu Q, Wang J, Liu S, Zhang J. Sox4 Expression Confers Bladder Cancer Stem Cell Properties and Predicts for Poor Patient Outcome. International Journal of Biological Sciences. 11: 1363-75. PMID 26681916 DOI: 10.7150/Ijbs.13240  0.327
2015 Yao S, Haddad SA, Hu Q, Liu S, Lunetta KL, Ruiz-Narvaez EA, Hong CC, Zhu Q, Sucheston-Campbell L, David Cheng TY, Bensen JT, Johnson CS, Trump DL, Haiman CA, Olshan AF, et al. Genetic variations in vitamin D-related pathways and breast cancer risk in African American women in the AMBER Consortium. International Journal of Cancer. Journal International Du Cancer. PMID 26650177 DOI: 10.1002/Ijc.29954  0.307
2015 Li YW, Shen H, Frangou C, Yang N, Guo J, Xu B, Bshara W, Shepherd L, Zhu Q, Wang J, Hu Q, Liu S, Morrison CD, Sun P, Zhang J. Characterization of TAZ domains important for the induction of breast cancer stem cell properties and tumorigenesis. Cell Cycle (Georgetown, Tex.). 14: 146-56. PMID 25602524 DOI: 10.4161/15384101.2014.967106  0.324
2015 Liu Q, Cirulli ET, Han Y, Yao S, Liu S, Zhu Q. Systematic assessment of imputation performance using the 1000 Genomes reference panels. Briefings in Bioinformatics. 16: 549-62. PMID 25246238 DOI: 10.1093/Bib/Bbu035  0.345
2015 Sucheston-Campbell LE, Preus L, Pasquini MC, McCarthy PL, Onel K, Zhu X, Spellman SR, Haiman C, Stram DO, Pooler L, Sheng X, Zhu Q, Yan L, Liu Q, Hu Q, et al. Combined Donor and Recipient Non-HLA Genotypes Show Evidence of Genome Wide Association with Transplant Related Mortality (TRM) after HLA-Matched Unrelated Donor Blood and Marrow Transplantation (URD-BMT) (DISCOVeRY-BMT study) Blood. 126: 61-61. DOI: 10.1182/Blood.V126.23.61.61  0.314
2015 Hahn T, Preus L, McCarthy PL, Pasquini MC, Onel K, Zhu X, Spellman SR, Haiman C, Stram DO, Pooler L, Sheng X, Zhu Q, Yan L, Liu Q, Hu Q, et al. Genome-Wide Association Study of Overall and Progression-Free Survival after HLA-Matched Unrelated Donor Blood and Marrow Transplantation (DISCOVeRY-BMT study) Blood. 126: 397-397. DOI: 10.1182/Blood.V126.23.397.397  0.364
2015 Clay AI, Hahn T, Preus L, Onel K, Zhu Q, Haiman C, Stram DO, Pooler LC, Sheng X, Weisdorf D, Yan L, Liu Q, Hu Q, Liu S, Battaglia S, et al. Evidence for Heterogeneous Genetic Associations with Acute Lymphoblastic Leukemia (ALL) By Cytogenetics and Sex in High-Risk Patients Treated with Matched Unrelated Donor Allogeneic Blood or Marrow Transplant (URD-BMT) Blood. 126: 2621-2621. DOI: 10.1182/Blood.V126.23.2621.2621  0.319
2015 Yao S, Hong C, Lunetta K, Haddad S, Ruiz-Narvaez E, Hu Q, Zhu Q, Liu S, Sucheston-Campbell L, Haiman C, Olshan A, Palmer J, Ambrosone C. Abstract 2794: Genetic variations in vitamin D-related pathways and breast cancer risk in African American women Cancer Research. 75: 2794-2794. DOI: 10.1158/1538-7445.Am2015-2794  0.327
2014 Singh PK, Long MD, Dhiman VK, Zhu Q, Sucheston-Campbell L, Smiraglia D, Campbell MJ. Abstract 1383: Evolution of the NCOR1 and NCOR2/SMRT cistromes in prostate cancer progression Cancer Research. 74: 1383-1383. DOI: 10.1158/1538-7445.Am2014-1383  0.37
2013 Long N, Dickson SP, Maia JM, Kim HS, Zhu Q, Allen AS. Leveraging prior information to detect causal variants via multi-variant regression. Plos Computational Biology. 9: e1003093. PMID 23762022 DOI: 10.1371/Journal.Pcbi.1003093  0.311
2012 Zhu M, Need AC, Han Y, Ge D, Maia JM, Zhu Q, Heinzen EL, Cirulli ET, Pelak K, He M, Ruzzo EK, Gumbs C, Singh A, Feng S, Shianna KV, et al. Using ERDS to infer copy-number variants in high-coverage genomes. American Journal of Human Genetics. 91: 408-21. PMID 22939633 DOI: 10.1016/J.Ajhg.2012.07.004  0.321
2012 Zhu Q, Ge D, Heinzen EL, Dickson SP, Urban TJ, Zhu M, Maia JM, He M, Zhao Q, Shianna KV, Goldstein DB. Prioritizing genetic variants for causality on the basis of preferential linkage disequilibrium. American Journal of Human Genetics. 91: 422-34. PMID 22939045 DOI: 10.1016/J.Ajhg.2012.07.010  0.335
2011 Halfon MS, Zhu Q, Brennan ER, Zhou Y. Erroneous attribution of relevant transcription factor binding sites despite successful prediction of cis-regulatory modules. Bmc Genomics. 12: 578. PMID 22115527 DOI: 10.1186/1471-2164-12-578  0.716
2011 Kazemian M, Zhu Q, Halfon MS, Sinha S. Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison. Nucleic Acids Research. 39: 9463-72. PMID 21821659 DOI: 10.1093/Nar/Gkr621  0.659
2011 Zhu Q, Ge D, Maia JM, Zhu M, Petrovski S, Dickson SP, Heinzen EL, Shianna KV, Goldstein DB. A genome-wide comparison of the functional properties of rare and common genetic variants in humans. American Journal of Human Genetics. 88: 458-68. PMID 21457907 DOI: 10.1016/J.Ajhg.2011.03.008  0.328
2011 Zhu Q, Miecznikowski JC, Halfon MS. A wholly defined Agilent microarray spike-in dataset. Bioinformatics (Oxford, England). 27: 1284-9. PMID 21414985 DOI: 10.1093/Bioinformatics/Btr135  0.629
2010 Escamilla-Hernandez R, Chakrabarti R, Romano RA, Smalley K, Zhu Q, Lai W, Halfon MS, Buck MJ, Sinha S. Genome-wide search identifies Ccnd2 as a direct transcriptional target of Elf5 in mouse mammary gland. Bmc Molecular Biology. 11: 68. PMID 20831799 DOI: 10.1186/1471-2199-11-68  0.674
2010 Zhu Q, Miecznikowski JC, Halfon MS. Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset. Bmc Bioinformatics. 11: 285. PMID 20507584 DOI: 10.1186/1471-2105-11-285  0.636
2009 Kantorovitz MR, Kazemian M, Kinston S, Miranda-Saavedra D, Zhu Q, Robinson GE, Göttgens B, Halfon MS, Sinha S. Motif-blind, genome-wide discovery of cis-regulatory modules in Drosophila and mouse. Developmental Cell. 17: 568-79. PMID 19853570 DOI: 10.1016/J.Devcel.2009.09.002  0.661
2009 Zhu Q, Halfon MS. Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in Drosophila melanogaster. Bmc Genomics. 10: 9. PMID 19128496 DOI: 10.1186/1471-2164-10-9  0.678
2007 Zhu Q, Halfon MS. Vector-dependent gene expression driven by insulated P-element reporter vectors. Fly. 1: 55-6. PMID 18690057 DOI: 10.4161/Fly.3892  0.629
2007 Li L, Zhu Q, He X, Sinha S, Halfon MS. Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses. Genome Biology. 8: R101. PMID 17550599 DOI: 10.1186/Gb-2007-8-6-R101  0.668
2005 Zhang C, Liu S, Zhu Q, Zhou Y. A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes. Journal of Medicinal Chemistry. 48: 2325-35. PMID 15801826 DOI: 10.1021/Jm049314D  0.479
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