Gerald Crabtree - Related publications

Stanford University, Palo Alto, CA 
 Howard Hughes Medical Institute, Chevy Chase, MD, United States 
Development, Signal Transduction, Molecular Neurobiology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Tan JY, Biasini A, Young RS, Marques AC. Splicing of enhancer-associated lincRNAs contributes to enhancer activity. Life Science Alliance. 3. PMID 32086317 DOI: 10.26508/lsa.202000663   
2020 Karagianni P, Moulos P, Schmidt D, Odom DT, Talianidis I. Bookmarking by Non-pioneer Transcription Factors during Liver Development Establishes Competence for Future Gene Activation. Cell Reports. 30: 1319-1328.e6. PMID 32023452 DOI: 10.1016/j.celrep.2020.01.006   
2020 Chiang S, Shinohara H, Huang JH, Tsai HK, Okada M. Inferring the transcriptional regulatory mechanism of signal-dependent gene expression via an integrative computational approach. Febs Letters. PMID 32052437 DOI: 10.1002/1873-3468.13757   
2020 Ngan CY, Wong CH, Tjong H, Wang W, Goldfeder RL, Choi C, He H, Gong L, Lin J, Urban B, Chow J, Li M, Lim J, Philip V, Murray SA, et al. Chromatin interaction analyses elucidate the roles of PRC2-bound silencers in mouse development. Nature Genetics. PMID 32094912 DOI: 10.1038/s41588-020-0581-x   
2020 Wang M, Guo J, Zhang L, Kuek V, Xu J, Zou J. Molecular structure, expression, and functional role of Clec11a in skeletal biology and cancers. Journal of Cellular Physiology. PMID 32003015 DOI: 10.1002/jcp.29600   
2020 Serobyan V, Kontarakis Z, El-Brolosy MA, Welker JM, Tolstenkov O, Saadeldein AM, Retzer N, Gottschalk A, Wehman AM, Stainier DY. Transcriptional adaptation in . Elife. 9. PMID 31951195 DOI: 10.7554/eLife.50014   
2020 Erickson RJB, Bandyopadhyay AA, Barnes AMT, O'Brien SA, Hu WS, Dunny GM. Single-Cell Analysis Reveals that the Enterococcal Sex Pheromone Response Results in Expression of Full-length Conjugation Operon Transcripts in All Induced Cells. Journal of Bacteriology. PMID 32041799 DOI: 10.1128/JB.00685-19   
2020 Grondona P, Bucher P, Schmitt A, Schönfeld C, Streibl B, Müller A, Essmann F, Liberatori S, Mohammed S, Hennig A, Kramer D, Schulze-Osthoff K, Hailfinger S. Threonine phosphorylation of IκBζ mediates inhibition of selective proinflammatory target genes. The Journal of Investigative Dermatology. PMID 32035922 DOI: 10.1016/j.jid.2019.12.036   
2020 Woldemeskel SA, Daitch AK, Alvarez L, Panis G, Zeinert R, Gonzalez D, Smith E, Collier J, Chien P, Cava F, Viollier PH, Goley ED. The conserved transcriptional regulator CdnL is required for metabolic homeostasis and morphogenesis in Caulobacter. Plos Genetics. 16: e1008591. PMID 31961855 DOI: 10.1371/journal.pgen.1008591   
2020 Rigby MJ, Ding Y, Farrugia MA, Feig M, Cortese GP, Mitchell H, Burger C, Puglielli L. The endoplasmic reticulum acetyltransferases ATase1/NAT8B and ATase2/NAT8 are differentially regulated to adjust engagement of the secretory pathway. Journal of Neurochemistry. e14958. PMID 31945187 DOI: 10.1111/jnc.14958   
2020 Lee TA, Bailey-Serres J. Conserved and nuanced hierarchy of gene regulatory response to hypoxia. The New Phytologist. PMID 31953954 DOI: 10.1111/nph.16437   
2020 Foreman R, Wollman R. Mammalian gene expression variability is explained by underlying cell state. Molecular Systems Biology. 16: e9146. PMID 32043799 DOI: 10.15252/msb.20199146   
2020 Sun CH, Weng SC, Wu JH, Tung SY, Su LH, Lin MH, Lee GA. DNA topoisomerase IIIβ promotes cyst generation by inducing cyst wall protein gene expression in . Open Biology. 10: 190228. PMID 32019477 DOI: 10.1098/rsob.190228   
2020 Kauzlaric A, Jang SM, Morchikh M, Cassano M, Planet E, Benkirane M, Trono D. KAP1 targets actively transcribed genomic loci to exert pleomorphic effects on RNA polymerase II activity. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190334. PMID 32068487 DOI: 10.1098/rstb.2019.0334   
2020 Zhang Y, Huang J, Li X, Fang C, Wang L. Identification of Functional Transcriptional Binding Sites within Chicken Gene Promoter and Screening Its Regulators. Genes. 11. PMID 32050731 DOI: 10.3390/genes11020186   
2020 Fan Y, Jiang W, Ran F, Luo R, An L, Hang H. An efficient Exogenous Gene Insertion Site in CHO Cells with High Transcription Level to Enhance AID Induced Mutation. Biotechnology Journal. e1900313. PMID 31975519 DOI: 10.1002/biot.201900313   
2020 Shu WJ, Zhao MJ, Klionsky DJ, Du HN. Old factors, new players: transcriptional regulation of autophagy. Autophagy. 1-3. PMID 32054419 DOI: 10.1080/15548627.2020.1728611   
2020 Turgeon PJ, Chan GC, Chen L, Jamal AN, Yan MS, Ho JJD, Yuan L, Ibeh N, Ku KH, Cybulsky MI, Aird WC, Marsden PA. Epigenetic Heterogeneity and Mitotic Heritability Prime Endothelial Cell Gene Induction. Journal of Immunology (Baltimore, Md. : 1950). PMID 31996458 DOI: 10.4049/jimmunol.1900744   
2020 Zhang C, Huang H, Chen Z, Zhang Z, Lu W, Qiu M. The transcription factor NKX2-2 regulates oligodendrocyte differentiation through domain-specific interactions with transcriptional co-repressors. The Journal of Biological Chemistry. PMID 31932307 DOI: 10.1074/jbc.RA119.011163   
2020 Yang M, Wang Y, Wang Q, Zhou Z, Yu Y, Wei S, Wang S, Qin Q. Characterization of Kruppel-like factor 6 in Epinephelus coioides: The role in viral infection and the transcriptional regulation on Peroxisome proliferator-activated receptor δ. Fish & Shellfish Immunology. PMID 32007559 DOI: 10.1016/j.fsi.2020.01.061   
2020 Hurtado C, Acevedo Sáenz LY, Vásquez Trespalacios EM, Urrego R, Jenks S, Sanz I, Vásquez G. DNA methylation changes on immune cells in Systemic Lupus Erythematosus. Autoimmunity. 1-8. PMID 32019373 DOI: 10.1080/08916934.2020.1722108   
2020 Shell Cox J, Van Dyke MW. General and Genomic DNA-Binding Specificity for the HB8 Transcription Factor TTHB023. Biomolecules. 10. PMID 31935968 DOI: 10.3390/biom10010094   
2020 Zheng T, Nakamoto A, Kumano G. H3K27me3 suppresses sister-lineage somatic gene expression in late embryonic germline cells of the ascidian, Halocynthia roretzi. Developmental Biology. PMID 31904374 DOI: 10.1016/j.ydbio.2019.12.017   
2020 Zhang J, Liu W, Zou C, Zhao Z, Lai Y, Shi Z, Xie X, Huang G, Wang Y, Zhang X, Fan Z, Su Q, Yin J, Shen J. Targeting super-enhancer-associated oncogenes in osteosarcoma with THZ2, a covalent CDK7 inhibitor. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 31937612 DOI: 10.1158/1078-0432.CCR-19-1418   
2020 Camino EM, Weinstein ML, List MP, Vellky JE, Rebeiz M, Williams TM. Red Light/Green Light, a Dual Fluorescent Protein Reporter System To Study Enhancer-Promoter Specificity in . G3 (Bethesda, Md.). PMID 31900331 DOI: 10.1534/g3.119.401033   
2020 Liu W, Zhang X. Single-cell alternative splicing analysis reveals dominance of single transcript variant. Genomics. PMID 31981701 DOI: 10.1016/j.ygeno.2020.01.014   
2020 Ku YS, Ni M, Muñoz NB, Xiao Z, Lo AW, Chen P, Li MW, Cheung MY, Xie M, Lam HM. GmABAS1 from soybean is a 1R-subtype MYB transcriptional repressor that enhances ABA sensitivity. Journal of Experimental Botany. PMID 32061092 DOI: 10.1093/jxb/eraa081   
2020 Zhang Y, Cao X, Li P, Fan Y, Zhang L, Li W, Liu Y. PSMC6 promotes osteoblast apoptosis through inhibiting PI3K/AKT signaling pathway activation in ovariectomy-induced osteoporosis mouse model. Journal of Cellular Physiology. PMID 32017075 DOI: 10.1002/jcp.29261   
2020 Ahmad R, Lahuna O, Sidibe A, Daulat A, Zhang Q, Luka M, Guillaume JL, Gallet S, Guillonneau F, Hamroune J, Polo S, Prévot V, Delagrange P, Dam J, Jockers R. GPR50-Ctail cleavage and nuclear translocation: a new signal transduction mode for G protein-coupled receptors. Cellular and Molecular Life Sciences : Cmls. PMID 31900622 DOI: 10.1007/s00018-019-03440-7   
2020 Nyati KK, Zaman MM, Sharma P, Kishimoto T. Arid5a, an RNA-Binding Protein in Immune Regulation: RNA Stability, Inflammation, and Autoimmunity. Trends in Immunology. PMID 32035762 DOI: 10.1016/   
2020 Panchy NL, Lloyd JP, Shiu SH. Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data. Bmc Genomics. 21: 159. PMID 32054475 DOI: 10.1186/s12864-020-6554-8   
2020 Sanders TJ, Wenck BR, Selan JN, Barker MP, Trimmer SA, Walker JE, Santangelo TJ. FttA is a CPSF73 homologue that terminates transcription in Archaea. Nature Microbiology. PMID 32094586 DOI: 10.1038/s41564-020-0667-3   
2020 Feldmann A, Dimitrova E, Kenney A, Lastuvkova A, Klose RJ. CDK-Mediator and FBXL19 prime developmental genes for activation by promoting atypical regulatory interactions. Nucleic Acids Research. PMID 31996894 DOI: 10.1093/nar/gkaa064   
2020 Lex RK, Ji Z, Falkenstein KN, Zhou W, Henry JL, Ji H, Vokes SA. GLI transcriptional repression regulates tissue-specific enhancer activity in response to Hedgehog signaling. Elife. 9. PMID 31989924 DOI: 10.7554/eLife.50670   
2020 Wilkinson M, Darmanis S, Pisco AO, Huber G. Persistent features of intermittent transcription. Scientific Reports. 10: 3138. PMID 32081955 DOI: 10.1038/s41598-020-60094-3   
2020 Wei D, Raza SHA, Zhang J, Wang X, Khan R, Ma Y, Zhang G, Luoreng Z, Zan L. Characterization of the promoter region of the bovine 3 gene: Roles of SREBF2 and PPARG. Physiological Genomics. PMID 32036767 DOI: 10.1152/physiolgenomics.00091.2019   
2020 Sharma N, Flaherty K, Lezgiyeva K, Wagner DE, Klein AM, Ginty DD. The emergence of transcriptional identity in somatosensory neurons. Nature. PMID 31915380 DOI: 10.1038/s41586-019-1900-1   
2020 Ban M, Liao W, Baker A, Compston A, Thorpe J, Molyneux P, Fraser M, Khadake J, Jones J, Coles A, Sawcer S. Transcript specific regulation of expression influences susceptibility to multiple sclerosis. European Journal of Human Genetics : Ejhg. PMID 31932686 DOI: 10.1038/s41431-019-0569-0   
2020 Keele GR, Quach BC, Israel JW, Chappell GA, Lewis L, Safi A, Simon JM, Cotney P, Crawford GE, Valdar W, Rusyn I, Furey TS. Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation. Plos Genetics. 16: e1008537. PMID 31961859 DOI: 10.1371/journal.pgen.1008537   
2020 Alexanian M, Ounzain S. Long Noncoding RNAs in Cardiac Development. Cold Spring Harbor Perspectives in Biology. PMID 31932317 DOI: 10.1101/cshperspect.a037374   
2020 Bertuzzi M, Tang D, Calligaris R, Vlachouli C, Finaurini S, Sanges R, Goldwurm S, Catalan M, Antonutti L, Manganotti P, Pizzolato G, Pezzoli G, Persichetti F, Carninci P, Gustincich S. A human minisatellite hosts an alternative transcription start site for NPRL3 driving its expression in a repeat number-dependent manner. Human Mutation. PMID 31898848 DOI: 10.1002/humu.23974   
2020 Wang Z, He W, Tang J, Guo F. Identification of highest-affinity binding sites of yeast transcription factor families. Journal of Chemical Information and Modeling. PMID 31944107 DOI: 10.1021/acs.jcim.9b01012   
2020 Kim TK, Lee I, Cho JH, Canine B, Keller A, Price ND, Hwang D, Carlson G, Hood L. Core transcriptional regulatory circuits in prion diseases. Molecular Brain. 13: 10. PMID 31959236 DOI: 10.1186/s13041-020-0551-3   
2020 Hu X, Xing Y, Fu X, Yang Q, Ren L, Wang Y, Li Q, Li J, Zhang L. Dynamically Coordinates the Myogenesis of Fetal Bovine Tissue by Adjusting Chromatin Accessibility. International Journal of Molecular Sciences. 21. PMID 32070024 DOI: 10.3390/ijms21041248   
2020 Fan G, Zheng H, Zhang K, Devi Ganeshan V, Opiyo SO, Liu D, Li M, Li G, Mitchell TK, Yun Y, Wang Z, Lu GD. FgHtf1 regulates global gene expression towards aerial mycelium and conidiophore formation in the cereal fungal pathogen . Applied and Environmental Microbiology. PMID 32086302 DOI: 10.1128/AEM.03024-19   
2020 Mavropoulos Papoudas S, Papanikolaou N, Nikolaou C. Monitoring the prolonged Tnf stimulation in space and time with topological-functional networks. Computational and Structural Biotechnology Journal. 18: 220-229. PMID 32021663 DOI: 10.1016/j.csbj.2020.01.001   
2020 Zhou C, Zhang J, Zhang M, Wang D, Ma Y, Wang Y, Wang Y, Huang Y, Zhang Y. Transcriptional memory inherited from donor cells is a developmental defect of bovine cloned embryos. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 34: 1637-1651. PMID 31914649 DOI: 10.1096/fj.201900578RR   
2020 Yeo WS, Anokwute C, Marcadis P, Levitan M, Ahmed M, Bae Y, Kim K, Kostrominova T, Liu Q, Bae T. A membrane-bound transcription factor is proteolytically regulated by the AAA+ protease FtsH in . Journal of Bacteriology. PMID 32094161 DOI: 10.1128/JB.00019-20   
2020 Gutierrez-Arcelus M, Baglaenko Y, Arora J, Hannes S, Luo Y, Amariuta T, Teslovich N, Rao DA, Ermann J, Jonsson AH, , Navarrete C, Rich SS, Taylor KD, Rotter JI, et al. Allele-specific expression changes dynamically during T cell activation in HLA and other autoimmune loci. Nature Genetics. PMID 32066938 DOI: 10.1038/s41588-020-0579-4   
2020 Verma YK, Singh AK, Gurudutta GU. Survival genes expression analysis following ionizing radiation to LiCl treated KG1a cells. International Journal of Radiation Biology. 1-56. PMID 31985347 DOI: 10.1080/09553002.2020.1721592