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Matthew H. Brush, Ph.D. - Publications

Affiliations: 
Duke University, Durham, NC 
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11/41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Goh CW, Lee IC, Sundaram JR, George SE, Yusoff P, Brush MH, Sze NSK, Shenolikar S. Chronic oxidative stress promotes GADD34-mediated phosphorylation of the TAR DNA-binding protein TDP-43, a modification linked to neurodegeneration. The Journal of Biological Chemistry. PMID 29109149 DOI: 10.1074/Jbc.M117.814111  0.597
2016 Diehl AD, Meehan TF, Bradford YM, Brush MH, Dahdul WM, Dougall DS, He Y, Osumi-Sutherland D, Ruttenberg A, Sarntivijai S, Van Slyke CE, Vasilevsky NA, Haendel MA, Blake JA, Mungall CJ. The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. Journal of Biomedical Semantics. 7: 44. PMID 27377652 DOI: 10.1186/S13326-016-0088-7  0.351
2011 Zhou W, Brush MH, Choy MS, Shenolikar S. Association with endoplasmic reticulum promotes proteasomal degradation of GADD34 protein. The Journal of Biological Chemistry. 286: 21687-96. PMID 21518769 DOI: 10.1074/Jbc.M110.212787  0.609
2010 Shenolikar S, Brush MH. Protein Serine/Threonine Phosphatase Inhibitors and Human Disease Handbook of Cell Signaling, 2/E. 2: 699-704. DOI: 10.1016/B978-0-12-374145-5.00089-9  0.547
2009 Aslan JE, You H, Williamson DM, Endig J, Youker RT, Thomas L, Shu H, Du Y, Milewski RL, Brush MH, Possemato A, Sprott K, Fu H, Greis KD, Runckel DN, et al. Akt and 14-3-3 control a PACS-2 homeostatic switch that integrates membrane traffic with TRAIL-induced apoptosis. Molecular Cell. 34: 497-509. PMID 19481529 DOI: 10.1016/J.Molcel.2009.04.011  0.369
2008 Brush MH, Shenolikar S. Control of cellular GADD34 levels by the 26S proteasome. Molecular and Cellular Biology. 28: 6989-7000. PMID 18794359 DOI: 10.1128/Mcb.00724-08  0.643
2007 Voltz JW, Brush M, Sikes S, Steplock D, Weinman EJ, Shenolikar S. Phosphorylation of PDZ1 domain attenuates NHERF-1 binding to cellular targets. The Journal of Biological Chemistry. 282: 33879-87. PMID 17895247 DOI: 10.1074/Jbc.M703481200  0.699
2007 Roadcap DW, Brush MH, Shenolikar S. Identification of cellular protein phosphatase-1 regulators. Methods in Molecular Biology (Clifton, N.J.). 365: 181-96. PMID 17200562 DOI: 10.1385/1-59745-267-X:181  0.671
2007 Hagerty L, Weitzel DH, Chambers J, Fortner CN, Brush MH, Loiselle D, Hosoya H, Haystead TA. ROCK1 phosphorylates and activates zipper-interacting protein kinase. The Journal of Biological Chemistry. 282: 4884-93. PMID 17158456 DOI: 10.1074/Jbc.M609990200  0.403
2004 Brush MH, Guardiola A, Connor JH, Yao TP, Shenolikar S. Deactylase inhibitors disrupt cellular complexes containing protein phosphatases and deacetylases. The Journal of Biological Chemistry. 279: 7685-91. PMID 14670976 DOI: 10.1074/Jbc.M310997200  0.629
2003 Brush MH, Weiser DC, Shenolikar S. Growth arrest and DNA damage-inducible protein GADD34 targets protein phosphatase 1 alpha to the endoplasmic reticulum and promotes dephosphorylation of the alpha subunit of eukaryotic translation initiation factor 2. Molecular and Cellular Biology. 23: 1292-303. PMID 12556489 DOI: 10.1128/Mcb.23.4.1292-1303.2003  0.7
Low-probability matches (unlikely to be authored by this person)
2013 Vasilevsky NA, Brush MH, Paddock H, Ponting L, Tripathy SJ, Larocca GM, Haendel MA. On the reproducibility of science: unique identification of research resources in the biomedical literature. Peerj. 1: e148. PMID 24032093 DOI: 10.7717/Peerj.148  0.299
2014 Sarntivijai S, Lin Y, Xiang Z, Meehan TF, Diehl AD, Vempati UD, Schürer SC, Pang C, Malone J, Parkinson H, Liu Y, Takatsuki T, Saijo K, Masuya H, Nakamura Y, ... Brush MH, et al. CLO: The cell line ontology. Journal of Biomedical Semantics. 5: 37. PMID 25852852 DOI: 10.1186/2041-1480-5-37  0.298
2016 Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, et al. The Ontology for Biomedical Investigations. Plos One. 11: e0154556. PMID 27128319 DOI: 10.1371/Journal.Pone.0154556  0.284
2015 Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan S, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A cultural shift in publishing. F1000research. 4: 134. PMID 26594330 DOI: 10.12688/F1000Research.6555.2  0.279
2015 Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SS, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A Cultural Shift in Publishing. Neuroinformatics. PMID 26589523 DOI: 10.1007/S12021-015-9284-3  0.279
2016 Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: a cultural shift in publishing. Brain and Behavior. 6: e00417. PMID 27110440 DOI: 10.1002/Brb3.417  0.279
2016 Bandrowski A, Brush M, Grethe JS, Haendel MA, Kennedy DN, Hill S, Hof PR, Martone ME, Pols M, Tan SC, Washington N, Zudilova-Seinstra E, Vasilevsky N. The Resource Identification Initiative: A cultural shift in publishing. The Journal of Comparative Neurology. 524: 8-22. PMID 26599696 DOI: 10.1002/Cne.23913  0.278
2020 Wagner AH, Hart RK, Babb L, Freimuth RR, Coffman A, Liang Y, Pitel B, Roy A, Brush M, Lee J, Lu A, Coard T, Rao S, Ritter D, Walsh B, et al. Abstract 1096: Harmonization standards from the Variant Interpretation for Cancer Consortium Cancer Research. 80: 1096-1096. DOI: 10.1158/1538-7445.Am2020-1096  0.277
2016 Mungall CJ, McMurry JA, Köhler S, Balhoff JP, Borromeo C, Brush M, Carbon S, Conlin T, Dunn N, Engelstad M, Foster E, Gourdine JP, Jacobsen JO, Keith D, Laraway B, et al. The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Research. PMID 27899636 DOI: 10.1093/Nar/Gkw1128  0.273
2016 McMurry JA, Köhler S, Washington NL, Balhoff JP, Borromeo C, Brush M, Carbon S, Conlin T, Dunn N, Engelstad M, Foster E, Gourdine JP, Jacobsen JO, Keith D, Laraway B, et al. Navigating the Phenotype Frontier: The Monarch Initiative. Genetics. 203: 1491-5. PMID 27516611 DOI: 10.1534/Genetics.116.188870  0.267
2014 Pearse R, Bourges-Waldegg D, Napolitano C, Brush M, Haendel M, Cheng S, Noggle S, Lipnick S, Johnson T. A centralized smart platform for open sharing of iPS cell information F1000research. 5. DOI: 10.7490/F1000Research.1095961.1  0.266
2015 Haendel MA, Vasilevsky N, Brush M, Hochheiser HS, Jacobsen J, Oellrich A, Mungall CJ, Washington N, Köhler S, Lewis SE, Robinson PN, Smedley D. Disease insights through cross-species phenotype comparisons. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 26092691 DOI: 10.1007/S00335-015-9577-8  0.266
2012 Vasilevsky N, Johnson T, Corday K, Torniai C, Brush M, Segerdell E, Wilson M, Shaffer C, Robinson D, Haendel M. Research resources: curating the new eagle-i discovery system. Database : the Journal of Biological Databases and Curation. 2012: bar067. PMID 22434835 DOI: 10.1093/Database/Bar067  0.264
2018 Ilik V, Conlon M, Triggs G, White M, Javed M, Brush MH, Gutzman K, Essaid S, Friedman P, Porter S, Szomszor M, Haendel MA, Eichmann D, Holmes KL. OpenVIVO: Transparency in Scholarship Frontiers in Research Metrics and Analytics. 2: 12. DOI: 10.3389/Frma.2017.00012  0.263
2002 Caffrey CR, Schanz M, Nkemngu NJ, Nkemgu-Njinkeng J, Brush M, Hansell E, Cohen FE, Flaherty TM, McKerrow JH, Steverding D. Screening of acyl hydrazide proteinase inhibitors for antiparasitic activity against Trypanosoma brucei. International Journal of Antimicrobial Agents. 19: 227-31. PMID 11932146 DOI: 10.1016/S0924-8579(01)00488-5  0.261
2019 Gourdine JF, Brush MH, Vasilevsky NA, Shefchek K, Köhler S, Matentzoglu N, Munoz-Torres MC, McMurry JA, Zhang XA, Robinson PN, Haendel MA. Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery. Database : the Journal of Biological Databases and Curation. 2019. PMID 31735951 DOI: 10.1093/Database/Baz114  0.259
2018 Dolman L, Page A, Babb L, Freimuth RR, Arachchi H, Bizon C, Brush M, Fiume M, Haendel M, Hansen DP, Milosavljevic A, Patel RY, Pawliczek P, Yates AD, Rehm HL. ClinGen advancing genomic data-sharing standards as a GA4GH driver project. Human Mutation. 39: 1686-1689. PMID 30311379 DOI: 10.1002/Humu.23625  0.259
2019 Stucky BJ, Balhoff JP, Barve N, Barve V, Brenskelle L, Brush MH, Dahlem GA, Gilbert JDJ, Kawahara AY, Keller O, Lucky A, Mayhew PJ, Plotkin D, Seltmann KC, Talamas E, et al. Developing a vocabulary and ontology for modeling insect natural history data: example data, use cases, and competency questions. Biodiversity Data Journal. 7: e33303. PMID 30918448 DOI: 10.3897/Bdj.7.E33303  0.258
2015 Ochs C, Perl Y, Geller J, Haendel M, Brush M, Arabandi S, Tu S. Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network. Journal of Biomedical Informatics. PMID 26048076 DOI: 10.1016/J.Jbi.2015.05.018  0.258
2017 Meehan TF, Conte N, Goldstein T, Inghirami G, Murakami MA, Brabetz S, Gu Z, Wiser JA, Dunn P, Begley DA, Krupke DM, Bertotti A, Bruna A, Brush MH, Byrne AT, et al. PDX-MI: Minimal Information for Patient-Derived Tumor Xenograft Models. Cancer Research. 77: e62-e66. PMID 29092942 DOI: 10.1158/0008-5472.Can-17-0582  0.234
2005 Ceffrey CR, Schanz M, Nkemngu NJ, Brush M, Hansel E, Cohen FE, Flaherty TM, Mckerrow JH, Steverding D. Erratum to “Screening of acyl hydrazide proteinase inhibitors for antiparasitic activity against Trypanosoma brucei” [Int. J. Antimicrob. Agents 19 (2002) 227–231] International Journal of Antimicrobial Agents. 26: 100. DOI: 10.1016/J.Ijantimicag.2005.03.002  0.226
2019 Wagner AH, Brush MH, Babb LJ, Griffith M, Griffith OL. 32. A new somatic variation model enables precise search strategies for clinical interpretations of patient tumors Cancer Genetics and Cytogenetics. DOI: 10.1016/J.Cancergen.2019.04.038  0.199
2019 Shefchek KA, Harris NL, Gargano M, Matentzoglu N, Unni D, Brush M, Keith D, Conlin T, Vasilevsky N, Zhang XA, Balhoff JP, Babb L, Bello SM, Blau H, Bradford Y, et al. The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Research. PMID 31701156 DOI: 10.1093/nar/gkz997  0.15
2021 Lawson J, Cabili MN, Kerry G, Boughtwood T, Thorogood A, Alper P, Bowers SR, Boyles RR, Brookes AJ, Brush M, Burdett T, Clissold H, Donnelly S, Dyke SOM, Freeberg MA, et al. The Data Use Ontology to streamline responsible access to human biomedical datasets. Cell Genomics. 1: None. PMID 34820659 DOI: 10.1016/j.xgen.2021.100028  0.136
2021 Rehm HL, Page AJH, Smith L, Adams JB, Alterovitz G, Babb LJ, Barkley MP, Baudis M, Beauvais MJS, Beck T, Beckmann JS, Beltran S, Bernick D, Bernier A, Bonfield JK, ... ... Brush MH, et al. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genomics. 1. PMID 35072136 DOI: 10.1016/j.xgen.2021.100029  0.127
2022 Wagner AH, Babb L, Alterovitz G, Baudis M, Brush M, Cameron DL, Cline M, Griffith M, Griffith OL, Hunt SE, Kreda D, Lee JM, Li S, Lopez J, Moyer E, et al. The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification. Cell Genomics. 1. PMID 35311178 DOI: 10.1016/j.xgen.2021.100027  0.117
2022 Unni DR, Moxon SAT, Bada M, Brush M, Bruskiewich R, Caufield JH, Clemons PA, Dancik V, Dumontier M, Fecho K, Glusman G, Hadlock JJ, Harris NL, Joshi A, Putman T, et al. Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science. Clinical and Translational Science. 15: 1848-1855. PMID 36125173 DOI: 10.1111/cts.13302  0.106
2021 Vita R, Zheng J, Jackson R, Dooley D, Overton JA, Miller MA, Berrios DC, Scheuermann RH, He Y, McGinty HK, Brochhausen M, Lin AY, Jain SB, Chibucos MC, Judkins J, ... ... Brush MH, et al. Standardization of assay representation in the Ontology for Biomedical Investigations. Database : the Journal of Biological Databases and Curation. 2021. PMID 34244718 DOI: 10.1093/database/baab040  0.099
2022 Matentzoglu N, Balhoff JP, Bello SM, Bizon C, Brush M, Callahan TJ, Chute CG, Duncan WD, Evelo CT, Gabriel D, Graybeal J, Gray A, Gyori BM, Haendel M, Harmse H, et al. A Simple Standard for Sharing Ontological Mappings (SSSOM). Database : the Journal of Biological Databases and Curation. 2022. PMID 35616100 DOI: 10.1093/database/baac035  0.084
2022 Zhao Y, Brush M, Wang C, Wagner AH, Liu H, Freimuth RR. Leveraging a Pharmacogenomics Knowledge-base to Formulate a Drug Response Phenotype Terminology for Genomic Medicine. Bioinformatics (Oxford, England). PMID 36222570 DOI: 10.1093/bioinformatics/btac646  0.082
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