☰

Jonathan Ozik, Ph.D. - Publications

Affiliations: 
University of Maryland, College Park, College Park, MD 
Tree Info Grants Similar researchers PubMed Report error

6/58 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Ozik J, Collier N, Wozniak JM, Macal C, Cockrell C, Friedman SH, Ghaffarizadeh A, Heiland R, An G, Macklin P. High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow. Bmc Bioinformatics. 19: 483. PMID 30577742 DOI: 10.1186/S12859-018-2510-X  0.301
2018 Ozik J, Collier NT, Wozniak JM, Macal C, An G. Extreme-scale Dynamic Exploration of a Distributed Agent-based Model with the EMEWS Framework. Ieee Transactions On Computational Social Systems. 5: 884-895. PMID 30349868 DOI: 10.1109/Tcss.2018.2859189  0.33
2013 North MJ, Collier NT, Ozik J, Tatara ER, Macal CM, Bragen M, Sydelko P. Complex adaptive systems modeling with Repast Simphony Complex Adaptive Systems Modeling. 1. DOI: 10.1186/2194-3206-1-3  0.316
2005 Ozik J, Hunt BR, Ott E. Formation of multifractal population patterns from reproductive growth and local resettlement. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 046213. PMID 16383518 DOI: 10.1103/Physreve.72.046213  0.409
2004 Ozik J, Hunt BR, Ott E. Growing networks with geographical attachment preference: emergence of small worlds. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 026108. PMID 14995521 DOI: 10.1103/Physreve.69.026108  0.384
2004 Newey M, Ozik J, Van der Meer SM, Ott E, Losert W. Band-in-band segregation of multidisperse granular mixtures Europhysics Letters. 66: 205-211. DOI: 10.1209/Epl/I2003-10207-Y  0.358
Low-probability matches (unlikely to be authored by this person)
2008 Ozik J, Sallach D, Macal C. Modeling Dynamic Multiscale Social Processes in Agent-Based Models Ieee Intelligent Systems. 23: 36-42. DOI: 10.1109/Mis.2008.71  0.29
2019 Khanna AS, Schneider JA, Collier N, Ozik J, Issema R, di Paola A, Skwara A, Ramachandran A, Webb J, Brewer R, Cunningham W, Hilliard C, Ramani S, Fujimoto K, Harawa N, et al. A modeling framework to inform preexposure prophylaxis initiation and retention scale-up in the context of 'Getting to Zero' initiatives. Aids (London, England). 33: 1911-1922. PMID 31490212 DOI: 10.1097/Qad.0000000000002290  0.284
2019 Rutter CM, Ozik J, DeYoreo M, Collier N. Microsimulation model calibration using incremental mixture approximate Bayesian computation The Annals of Applied Statistics. 13: 2189-2212. DOI: 10.1214/19-Aoas1279  0.282
2019 Murphy JT, Altaweel M, Ozik J, Lammers RB. Understanding institutions for water allocation and exchange: Insights from dynamic agent‐based modeling Wires Water. 6. DOI: 10.1002/Wat2.1384  0.27
2014 Murphy JT, Ozik J, Collier NT, Altaweel M, Lammers RB, Kliskey A, Alessa L, Cason D, Williams P. Water relationships in the U.S. Southwest: Characterizing water management networks using natural language processing Water (Switzerland). 6: 1601-1641. DOI: 10.3390/W6061601  0.255
2000 Berkley AJ, Kazanas D, Ozik J. Modeling the X‐Ray–Ultraviolet Correlations in NGC 7469 The Astrophysical Journal. 535: 712-720. DOI: 10.1086/308880  0.24
2018 Wozniak JM, Jain R, Balaprakash P, Ozik J, Collier NT, Bauer J, Xia F, Brettin T, Stevens R, Mohd-Yusof J, Cardona CG, Essen BV, Baughman M. CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research. Bmc Bioinformatics. 19: 491. PMID 30577736 DOI: 10.1186/S12859-018-2508-4  0.232
2019 Tung EL, Abramsohn EM, Boyd K, Makelarski JA, Beiser DG, Chou C, Huang ES, Ozik J, Kaligotla C, Lindau ST. Impact of a Low-Intensity Resource Referral Intervention on Patients' Knowledge, Beliefs, and Use of Community Resources: Results from the CommunityRx Trial. Journal of General Internal Medicine. PMID 31749028 DOI: 10.1007/S11606-019-05530-5  0.228
2023 Collier N, Ozik J. DISTRIBUTED AGENT-BASED SIMULATION WITH REPAST4PY. Proceedings of the ... Winter Simulation Conference. Winter Simulation Conference. 2022: 192-206. PMID 36777718 DOI: 10.1109/wsc57314.2022.10015389  0.227
2012 Drury E, Miller M, Macal CM, Graziano DJ, Heimiller D, Ozik J, Perry IV TD. The transformation of southern California's residential photovoltaics market through third-party ownership Energy Policy. 42: 681-690. DOI: 10.1016/J.Enpol.2011.12.047  0.226
2021 Cockrell C, Ozik J, Collier N, An G. Nested active learning for efficient model contextualization and parameterization: pathway to generating simulated populations using multi-scale computational models. Simulation. 97: 287-296. PMID 34744189 DOI: 10.1177/0037549720975075  0.224
2016 Ozik J, Collier NT, Wozniak JM, Spagnuolo C. FROM DESKTOP TO LARGE-SCALE MODEL EXPLORATION WITH SWIFT/T. Proceedings of the ... Winter Simulation Conference. Winter Simulation Conference. 2016: 206-220. PMID 31239603 DOI: 10.1109/WSC.2016.7822090  0.215
2022 DeYoreo M, Rutter CM, Ozik J, Collier N. Sequentially calibrating a Bayesian microsimulation model to incorporate new information and assumptions. Bmc Medical Informatics and Decision Making. 22: 12. PMID 35022005 DOI: 10.1186/s12911-021-01726-0  0.209
2020 Hotton AL, Chen YT, Schumm P, Khanna AS, Brewer R, Skaathun B, Issema RS, Ramani S, Ramachandran A, Ozik J, Fujimoto K, Harawa NT, Schneider JA. Socio-Structural and Neighborhood Predictors of Incident Criminal Justice Involvement in a Population-Based Cohort of Young Black MSM and Transgender Women. Journal of Urban Health : Bulletin of the New York Academy of Medicine. PMID 32180129 DOI: 10.1007/S11524-020-00428-8  0.209
2019 Echevarria D, Gutfraind A, Boodram B, Layden J, Ozik J, Page K, Cotler SJ, Major M, Dahari H. Modeling indicates efficient vaccine-based interventions for the elimination of hepatitis C virus among persons who inject drugs in metropolitan Chicago. Vaccine. 37: 2608-2616. PMID 30962092 DOI: 10.1016/J.Vaccine.2019.02.081  0.207
2019 Ozik J, Collier N, Heiland R, An G, Macklin P. Learning-accelerated discovery of immune-tumour interactions. Molecular Systems Design & Engineering. 4: 747-760. PMID 31497314 DOI: 10.1039/c9me00036d  0.205
2022 Boodram B, Mackesy-Amiti ME, Khanna A, Brickman B, Dahari H, Ozik J. People who inject drugs in metropolitan Chicago: A meta-analysis of data from 1997-2017 to inform interventions and computational modeling toward hepatitis C microelimination. Plos One. 17: e0248850. PMID 35020725 DOI: 10.1371/journal.pone.0248850  0.204
2015 Ozik J, Collier N, Murphy JT, Altaweel M, Lammers RB, Prusevich AA, Kliskey A, Alessa L. Simulating Water, Individuals, and Management using a coupled and distributed approach Proceedings - Winter Simulation Conference. 2015: 1120-1131. DOI: 10.1109/WSC.2014.7019970  0.199
1996 Lazarian A, Efroimsky M, Ozik J. Mechanical alignment of prolate cosmic-dust grains: Cross section alignment Astrophysical Journal. 472: 240-244. DOI: 10.1086/178058  0.199
2021 Tatara E, Schneider J, Quasebarth M, Collier N, Pollack H, Boodram B, Friedman S, Salisbury-Afshar E, Mackesy-Amiti ME, Ozik J. Application of Distributed Agent-based Modeling to Investigate Opioid Use Outcomes in Justice Involved Populations. Ieee International Symposium On Parallel & Distributed Processing, Workshops and Phd Forum : [Proceedings]. Ieee International Symposium On Parallel & Distributed Processing, Workshops and Phd Forum. 2021: 989-997. PMID 35865008 DOI: 10.1109/ipdpsw52791.2021.00157  0.18
2019 Rutter CM, Ozik J, DeYoreo M, Collier N. MICROSIMULATION MODEL CALIBRATION USING INCREMENTAL MIXTURE APPROXIMATE BAYESIAN COMPUTATION. The Annals of Applied Statistics. 13: 2189-2212. PMID 34691351 DOI: 10.1214/19-aoas1279  0.17
2021 Khanna AS, Edali M, Ozik J, Collier N, Hotton A, Skwara A, Ardestani BM, Brewer R, Fujimoto K, Harawa N, Schneider JA. Projecting the number of new HIV infections to formulate the "Getting to Zero" strategy in Illinois, USA. Mathematical Biosciences and Engineering : Mbe. 18: 3922-3938. PMID 34198418 DOI: 10.3934/mbe.2021196  0.163
2021 Khanna AS, Edali M, Ozik J, Collier N, Hotton A, Skwara A, Ardestani BM, Brewer R, Fujimoto K, Harawa N, Schneider JA. Projecting the number of new HIV infections to formulate the "Getting to Zero" strategy in Illinois, USA. Mathematical Biosciences and Engineering : Mbe. 18: 3922-3938. PMID 34198418 DOI: 10.3934/mbe.2021196  0.163
2016 Murphy JT, Ozik J, Collier N, Altaweel M, Lammers RB, Prusevich AA, Kliskey A, Alessa L. Simulating regional hydrology and water management: An integrated agent-based approach Proceedings - Winter Simulation Conference. 2016: 3913-3924. DOI: 10.1109/WSC.2015.7408547  0.16
2020 Wang Y, An G, Becker A, Cockrell C, Collier N, Craig M, Davis CL, Faeder J, Versypt ANF, Gianlupi JF, Glazier JA, Heiland R, Hillen T, Islam MA, Jenner A, ... ... Ozik J, et al. Rapid community-driven development of a SARS-CoV-2 tissue simulator. Biorxiv : the Preprint Server For Biology. PMID 32511322 DOI: 10.1101/2020.04.02.019075  0.159
2009 North MJ, Howe TR, Collier N, Tatara E, Ozik J, Macal C. Search as a tool for emergence Handbook of Research On Agent-Based Societies: Social and Cultural Interactions. 341-363. DOI: 10.4018/978-1-60566-236-7.ch023  0.154
2023 Pineda-Antunez C, Seguin C, van Duuren L, Knudsen AB, Davidi B, de Lima PN, Rutter C, Kuntz KM, Lansdorp-Vogelaar I, Collier N, Ozik J, Alarid-Escudero F. Emulator-based Bayesian calibration of the CISNET colorectal cancer models. Medrxiv : the Preprint Server For Health Sciences. PMID 36909607 DOI: 10.1101/2023.02.27.23286525  0.153
2021 Lindau ST, Makelarski JA, Kaligotla C, Abramsohn EM, Beiser DG, Chou C, Collier N, Huang ES, Macal CM, Ozik J, Tung EL. Building and experimenting with an agent-based model to study the population-level impact of CommunityRx, a clinic-based community resource referral intervention. Plos Computational Biology. 17: e1009471. PMID 34695116 DOI: 10.1371/journal.pcbi.1009471  0.151
2019 Khanna AS, Schneider JA, Collier N, Ozik J, Issema R, di Paola A, Skwara A, Ramachandran A, Webb J, Brewer R, Cunningham W, Hilliard C, Ramani S, Fujimoto K, Harawa N, et al. A modeling framework to inform PrEP initiation and retention scale-up in the context of Getting to Zero Initiatives. Aids (London, England). PMID 31274533 DOI: 10.1097/QAD.0000000000002290  0.149
2019 Tatara E, Collier NT, Ozik J, Gutfraind A, Cotler SJ, Dahari H, Major M, Boodram B. MULTI-OBJECTIVE MODEL EXPLORATION OF HEPATITIS C ELIMINATION IN AN AGENT-BASED MODEL OF PEOPLE WHO INJECT DRUGS. Proceedings of the ... Winter Simulation Conference. Winter Simulation Conference. 2019: 1008-1019. PMID 32624641 DOI: 10.1109/wsc40007.2019.9004747  0.137
2022 Alarid-Escudero F, Knudsen AB, Ozik J, Collier N, Kuntz KM. Characterization and Valuation of the Uncertainty of Calibrated Parameters in Microsimulation Decision Models. Frontiers in Physiology. 13: 780917. PMID 35615677 DOI: 10.3389/fphys.2022.780917  0.136
2023 Nascimento de Lima P, Rutter CM, Maerzluft C, Ozik J, Collier N. Robustness Analysis of Colorectal Cancer Colonoscopy Screening Strategies. Medrxiv : the Preprint Server For Health Sciences. PMID 36945378 DOI: 10.1101/2023.03.07.23286939  0.132
2023 Hotton AL, Lee F, Sheeler D, Ozik J, Collier N, Edali M, Ardestani BM, Brewer R, Schrode KM, Fujimoto K, Harawa NT, Schneider JA, Khanna AS. Impact of post-incarceration care engagement interventions on HIV transmission among young Black men who have sex with men and their sexual partners: an agent-based network modeling study. Lancet Regional Health. Americas. 28: 100628. PMID 38026447 DOI: 10.1016/j.lana.2023.100628  0.132
2022 Tatara E, Gutfraind A, Collier NT, Echevarria D, Cotler SJ, Major ME, Ozik J, Dahari H, Boodram B. Modeling hepatitis C micro-elimination among people who inject drugs with direct-acting antivirals in metropolitan Chicago. Plos One. 17: e0264983. PMID 35271634 DOI: 10.1371/journal.pone.0264983  0.131
2021 Rutter CM, Nascimento de Lima P, Lee JK, Ozik J. Too Good to Be True? Evaluation of Colonoscopy Sensitivity Assumptions Used in Policy Models. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. PMID 34906968 DOI: 10.1158/1055-9965.EPI-21-1001  0.129
2022 de Lima PN, Vardavas R, Baker L, Ringel JS, Lempert RJ, Rutter CM, Ozik J. Reopening Under Uncertainty: Stress-Testing California's COVID-19 Exit Strategy. Rand Health Quarterly. 9: 24. PMID 35837515  0.121
2013 Ozik J, Collier NT, Murphy JT, North MJ. The ReLogo agent-based modeling language Proceedings of the 2013 Winter Simulation Conference - Simulation: Making Decisions in a Complex World, Wsc 2013. 1560-1568. DOI: 10.1109/WSC.2013.6721539  0.117
2022 Lee F, Khanna AS, Hallmark CJ, Lavingia R, McNeese M, Zhao J, McNeese ML, Khuwaja S, Ardestani BM, Collier N, Ozik J, Hotton AL, Harawa NT, Schneider JA, Fujimoto K. Expanding Medicaid to Reduce Human Immunodeficiency Virus Transmission in Houston, Texas: Insights From a Modeling Study. Medical Care. 61: 12-19. PMID 36477617 DOI: 10.1097/MLR.0000000000001772  0.109
2023 Hailegiorgis A, Ishida Y, Collier N, Imamura M, Shi Z, Reinharz V, Tsuge M, Barash D, Hiraga N, Yokomichi H, Tateno C, Ozik J, Uprichard SL, Chayama K, Dahari H. Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics. Plos Computational Biology. 19: e1011309. PMID 37535676 DOI: 10.1371/journal.pcbi.1011309  0.104
2023 Tatara E, Lin Q, Ozik J, Kolak M, Collier N, Halpern D, Anselin L, Dahari H, Boodram B, Schneider J. Modeling the impact of spatial inequities in access to medications for treatment of opioid use disorder among persons who inject drugs. Medrxiv : the Preprint Server For Health Sciences. PMID 37292847 DOI: 10.1101/2023.05.12.23289915  0.099
2021 Nascimento de Lima P, Lempert R, Vardavas R, Baker L, Ringel J, Rutter CM, Ozik J, Collier N. Reopening California: Seeking robust, non-dominated COVID-19 exit strategies. Plos One. 16: e0259166. PMID 34699570 DOI: 10.1371/journal.pone.0259166  0.098
2021 de Lima PN, Lempert R, Vardavas R, Baker L, Ringel J, Rutter CM, Ozik J, Collier N. Reopening California : Seeking Robust, Non-Dominated COVID-19 Exit Strategies. Medrxiv : the Preprint Server For Health Sciences. PMID 33948599 DOI: 10.1101/2021.04.26.21256105  0.096
2023 Tilmon S, Nyenhuis S, Solomonides A, Barbarioli B, Bhargava A, Birz S, Bouzein K, Cardenas C, Carlson B, Cohen E, Dillon E, Furner B, Huang Z, Johnson J, Krishnan N, ... ... Ozik J, et al. Sociome Data Commons: A scalable and sustainable platform for investigating the full social context and determinants of health. Journal of Clinical and Translational Science. 7: e255. PMID 38229897 DOI: 10.1017/cts.2023.670  0.09
2020 Pagkas-Bather J, Ozik J, Millett G, Schneider JA. The last Black man with HIV in San Francisco: the potential role of gentrification on HIV getting to zero achievements. The Lancet. Hiv. 7: e853-e856. PMID 33275918 DOI: 10.1016/S2352-3018(20)30250-2  0.086
2021 Schneider JA, Taylor BG, Hotton AL, Lamuda PA, Ozik J, Lin Q, Flanagan E, Tuyet Pho M, Kolak M, Brewer R, Pagkas-Bather J, Pollack HA. National variability in Americans' COVID-19 protective behaviors: Implications for vaccine roll-out. Plos One. 16: e0259257. PMID 34739498 DOI: 10.1371/journal.pone.0259257  0.083
2021 Schneider JA, Hayford C, Hotton A, Tabidze I, Wertheim JO, Ramani S, Hallmark C, Morgan E, Janulis P, Khanna A, Ozik J, Fujimoto K, Flores R, D'aquila R, Benbow N. Do partner services linked to molecular clusters yield people with viremia or new HIV? results from a historical cohort study. Aids (London, England). PMID 34873085 DOI: 10.1097/QAD.0000000000003140  0.076
2022 van Duuren LA, Ozik J, Spliet R, Collier NT, Lansdorp-Vogelaar I, Meester RGS. An Evolutionary Algorithm to Personalize Stool-Based Colorectal Cancer Screening. Frontiers in Physiology. 12: 718276. PMID 35153804 DOI: 10.3389/fphys.2021.718276  0.062
2022 Hotton AL, Ozik J, Kaligotla C, Collier N, Stevens A, Khanna AS, MacDonell MM, Wang C, LePoire DJ, Chang YS, Martinez-Moyano IJ, Mucenic B, Pollack HA, Schneider JA, Macal C. Impact of changes in protective behaviors and out-of-household activities by age on COVID-19 transmission and hospitalization in Chicago, Illinois. Annals of Epidemiology. PMID 35728733 DOI: 10.1016/j.annepidem.2022.06.005  0.051
2022 de Lima PN, van den Puttelaar R, Hahn AI, Harlass M, Collier N, Ozik J, Zauber AG, Lansdorp-Vogelaar I, Rutter CM. Unequal Recovery in Colorectal Cancer Screening Following the COVID-19 Pandemic: A Comparative Microsimulation Analysis. Medrxiv : the Preprint Server For Health Sciences. PMID 36597528 DOI: 10.1101/2022.12.23.22283887  0.045
2023 Nascimento de Lima P, van den Puttelaar R, Hahn AI, Harlass M, Collier N, Ozik J, Zauber AG, Lansdorp-Vogelaar I, Rutter CM. Projected long-term effects of colorectal cancer screening disruptions following the COVID-19 pandemic. Elife. 12. PMID 37129468 DOI: 10.7554/eLife.85264  0.044
2018 Denrell JC, Ozik J, Rahmandad H, Smith EB. The Role of Computer Simulations in Science and the Academy Academy of Management Proceedings. 2018: 18525. DOI: 10.5465/ambpp.2018.18525symposium  0.031
2015 Ozik J, Collier N, Combs T, Macal CM, North M. Repast Simphony Statecharts Journal of Artificial Societies and Social Simulation. 18. DOI: 10.18564/jasss.2840  0.01
Hide low-probability matches.