Joshua Tzvi Vogelstein - Publications

Johns Hopkins University, Baltimore, MD 
computational, circuit inference, fluorescence imaging

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Xu T, Nenning KH, Schwartz E, Hong SJ, Vogelstein JT, Goulas A, Fair DA, Schroeder CE, Margulies DS, Smallwood J, Milham MP, Langs G. Cross-species Functional Alignment Reveals Evolutionary Hierarchy Within the Connectome. Neuroimage. 117346. PMID 32916286 DOI: 10.1016/j.neuroimage.2020.117346  0.36
2020 Wang N, Anderson RJ, Ashbrook DG, Gopalakrishnan V, Park Y, Priebe CE, Qi Y, Laoprasert R, Vogelstein JT, Williams RW, Johnson GA. Variability and Heritability of Mouse Brain Structure: Microscopic MRI Atlases and Connectomes for Diverse Strains. Neuroimage. 117274. PMID 32818613 DOI: 10.1016/j.neuroimage.2020.117274  0.96
2020 Nenning KH, Xu T, Schwartz E, Arroyo J, Woehrer A, Franco AR, Vogelstein JT, Margulies DS, Liu H, Smallwood J, Milham MP, Langs G. Joint Embedding: A scalable alignment to compare individuals in a connectivity space. Neuroimage. 117232. PMID 32771618 DOI: 10.1016/j.neuroimage.2020.117232  0.36
2020 Vogelstein JT, Powell M, Koenecke A, Xiong R, Fischer N, Huq S, Khalafallah AM, Caffo B, Stuart EA, Papadopoulos N, Kinzler KW, Vogelstein B, Zhou S, Bettegowda C, Konig MF, et al. Alpha-1 adrenergic receptor antagonists for preventing acute respiratory distress syndrome and death from cytokine storm syndrome. Arxiv. PMID 32550250  0.56
2020 Konig MF, Powell MA, Staedtke V, Bai RY, Thomas DL, Fischer NM, Huq S, Khalafallah AM, Koenecke A, Xiong R, Mensh B, Papadopoulos N, Kinzler KW, Vogelstein B, Vogelstein JT, et al. Preventing cytokine storm syndrome in COVID-19 using α-1 adrenergic receptor antagonists. The Journal of Clinical Investigation. PMID 32352407 DOI: 10.1172/JCI139642  0.56
2020 Charles AS, Falk B, Turner N, Pereira TD, Tward D, Pedigo BD, Chung J, Burns R, Ghosh SS, Kebschull JM, Silversmith W, Vogelstein JT. Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics. Annual Review of Neuroscience. PMID 32283996 DOI: 10.1146/annurev-neuro-100119-110036  0.56
2019 Wang S, Arroyo J, Vogelstein JT, Priebe CE. Joint Embedding of Graphs. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 31675314 DOI: 10.1109/TPAMI.2019.2948619  0.96
2019 Vogelstein JT, Bridgeford EW, Pedigo BD, Chung J, Levin K, Mensh B, Priebe CE. Connectal coding: discovering the structures linking cognitive phenotypes to individual histories. Current Opinion in Neurobiology. 55: 199-212. PMID 31102987 DOI: 10.1016/j.conb.2019.04.005  0.96
2019 Priebe CE, Park Y, Vogelstein JT, Conroy JM, Lyzinski V, Tang M, Athreya A, Cape J, Bridgeford E. On a two-truths phenomenon in spectral graph clustering. Proceedings of the National Academy of Sciences of the United States of America. PMID 30850525 DOI: 10.1073/pnas.1814462116  0.96
2019 Vogelstein JT, Bridgeford EW, Wang Q, Priebe CE, Maggioni M, Shen C. Discovering and deciphering relationships across disparate data modalities. Elife. 8. PMID 30644820 DOI: 10.7554/eLife.41690  0.96
2018 Tang R, Ketcha M, Badea A, Calabrese ED, Margulies DS, Vogelstein JT, Priebe CE, Sussman DL. Connectome Smoothing via Low-rank Approximations. Ieee Transactions On Medical Imaging. PMID 30530318 DOI: 10.1109/TMI.2018.2885968  0.96
2018 Vogelstein JT, Perlman E, Falk B, Baden A, Gray Roncal W, Chandrashekhar V, Collman F, Seshamani S, Patsolic JL, Lillaney K, Kazhdan M, Hider R, Pryor D, Matelsky J, Gion T, et al. A community-developed open-source computational ecosystem for big neuro data. Nature Methods. PMID 30377345 DOI: 10.1038/s41592-018-0181-1  0.56
2017 Dyer EL, Gray Roncal W, Prasad JA, Fernandes HL, Gürsoy D, De Andrade V, Fezzaa K, Xiao X, Vogelstein JT, Jacobsen C, Körding KP, Kasthuri N. Quantifying Mesoscale Neuroanatomy Using X-Ray Microtomography. Eneuro. 4. PMID 29085899 DOI: 10.1523/ENEURO.0195-17.2017  0.36
2017 Hildebrand DGC, Cicconet M, Torres RM, Choi W, Quan TM, Moon J, Wetzel AW, Scott Champion A, Graham BJ, Randlett O, Plummer GS, Portugues R, Bianco IH, Saalfeld S, Baden AD, ... ... Vogelstein JT, et al. Whole-brain serial-section electron microscopy in larval zebrafish. Nature. PMID 28489821 DOI: 10.1038/nature22356  0.36
2017 Simhal AK, Aguerrebere C, Collman F, Vogelstein JT, Micheva KD, Weinberg RJ, Smith SJ, Sapiro G. Probabilistic fluorescence-based synapse detection. Plos Computational Biology. 13: e1005493. PMID 28414801 DOI: 10.1371/journal.pcbi.1005493  0.4
2017 Kiar G, Gorgolewski KJ, Kleissas D, Roncal WG, Litt B, Wandell B, Poldrack RA, Wiener M, Vogelstein RJ, Burns R, Vogelstein JT. Science In the Cloud (SIC): A use case in MRI Connectomics. Gigascience. PMID 28327935 DOI: 10.1093/gigascience/gix013  0.56
2016 Chen L, Vogelstein JT, Lyzinski V, Priebe CE. A joint graph inference case study: the C. elegans chemical and electrical connectomes. Worm. 5: e1142041. PMID 27386164 DOI: 10.1080/21624054.2016.1142041  0.96
2016 Lyzinski V, Fishkind DE, Fiori M, Vogelstein JT, Priebe CE, Sapiro G. Graph Matching: Relax at Your Own Risk. Ieee Transactions On Pattern Analysis and Machine Intelligence. 38: 60-73. PMID 26656578 DOI: 10.1109/TPAMI.2015.2424894  0.96
2016 Koutra D, Shah N, Vogelstein JT, Gallagher B, Faloutsos C. DELTACON: Principled massive-graph similarity function with attribution Acm Transactions On Knowledge Discovery From Data. 10. DOI: 10.1145/2824443  0.96
2015 Harris KM, Spacek J, Bell ME, Parker PH, Lindsey LF, Baden AD, Vogelstein JT, Burns R. A resource from 3D electron microscopy of hippocampal neuropil for user training and tool development. Scientific Data. 2: 150046. PMID 26347348 DOI: 10.1038/sdata.2015.46  0.96
2015 Chen L, Shen C, Vogelstein J, Priebe CE. Robust Vertex Classification. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 26340770 DOI: 10.1109/TPAMI.2015.2456913  0.96
2015 Gray Roncal WR, Kleissas DM, Vogelstein JT, Manavalan P, Lillaney K, Pekala M, Burns R, Vogelstein RJ, Priebe CE, Chevillet MA, Hager GD. An automated images-to-graphs framework for high resolution connectomics. Frontiers in Neuroinformatics. 9: 20. PMID 26321942 DOI: 10.3389/fninf.2015.00020  0.96
2015 Kasthuri N, Hayworth KJ, Berger DR, Schalek RL, Conchello JA, Knowles-Barley S, Lee D, Vázquez-Reina A, Kaynig V, Jones TR, Roberts M, Morgan JL, Tapia JC, Seung HS, Roncal WG, ... Vogelstein JT, et al. Saturated Reconstruction of a Volume of Neocortex. Cell. 162: 648-61. PMID 26232230 DOI: 10.1016/j.cell.2015.06.054  0.96
2015 Vogelstein JT, Conroy JM, Lyzinski V, Podrazik LJ, Kratzer SG, Harley ET, Fishkind DE, Vogelstein RJ, Priebe CE. Fast approximate quadratic programming for graph matching. Plos One. 10: e0121002. PMID 25886624 DOI: 10.1371/journal.pone.0121002  0.96
2015 Priebe CE, Sussman DL, Tang M, Vogelstein JT. Statistical Inference on Errorfully Observed Graphs Journal of Computational and Graphical Statistics. 24: 930-953. DOI: 10.1080/10618600.2014.951049  0.96
2015 Lyzinski V, Sussman DL, Fishkind DE, Pao H, Chen L, Vogelstein JT, Park Y, Priebe CE. Spectral clustering for divide-and-conquer graph matching Parallel Computing. 47: 70-87. DOI: 10.1016/j.parco.2015.03.004  0.96
2015 Kasthuri N, Hayworth KJ, Berger DR, Schalek RL, Conchello JA, Knowles-Barley S, Lee D, Vázquez-Reina A, Kaynig V, Jones TR, Roberts M, Morgan JL, Tapia JC, Seung HS, Roncal WG, ... Vogelstein JT, et al. Saturated Reconstruction of a Volume of Neocortex Cell. 162: 648-661. DOI: 10.1016/j.cell.2015.06.054  0.96
2015 Vogelstein JT, Priebe CE. Shuffled Graph Classification: Theory and Connectome Applications Journal of Classification. 32: 3-20. DOI: 10.1007/s00357-015-9170-6  0.96
2014 Weiler NC, Collman F, Vogelstein JT, Burns R, Smith SJ. Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography. Scientific Data. 1: 140046. PMID 25977797 DOI: 10.1038/sdata.2014.46  0.36
2014 Burns R, Vogelstein JT, Szalay AS. From cosmos to connectomes: the evolution of data-intensive science. Neuron. 83: 1249-52. PMID 25233306 DOI: 10.1016/j.neuron.2014.08.045  0.36
2014 Sweeney EM, Vogelstein JT, Cuzzocreo JL, Calabresi PA, Reich DS, Crainiceanu CM, Shinohara RT. A comparison of supervised machine learning algorithms and feature vectors for MS lesion segmentation using multimodal structural MRI. Plos One. 9: e95753. PMID 24781953 DOI: 10.1371/journal.pone.0095753  0.96
2014 Vogelstein JT, Park Y, Ohyama T, Kerr RA, Truman JW, Priebe CE, Zlatic M. Discovery of brainwide neural-behavioral maps via multiscale unsupervised structure learning. Science (New York, N.Y.). 344: 386-92. PMID 24674869 DOI: 10.1126/science.1250298  0.96
2014 Carlson DE, Vogelstein JT, Qisong Wu, Wenzhao Lian, Mingyuan Zhou, Stoetzner CR, Kipke D, Weber D, Dunson DB, Carin L. Multichannel electrophysiological spike sorting via joint dictionary learning and mixture modeling. Ieee Transactions On Bio-Medical Engineering. 61: 41-54. PMID 23912463 DOI: 10.1109/TBME.2013.2275751  0.96
2013 Burns R, Roncal WG, Kleissas D, Lillaney K, Manavalan P, Perlman E, Berger DR, Bock DD, Chung K, Grosenick L, Kasthuri N, Weiler NC, Deisseroth K, Kazhdan M, Lichtman J, ... ... Vogelstein JT, et al. The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience. Scientific and Statistical Database Management : International Conference, Ssdbm ... : Proceedings. International Conference On Scientific and Statistical Database Management. PMID 24401992 DOI: 10.1145/2484838.2484870  0.56
2013 Craddock RC, Jbabdi S, Yan CG, Vogelstein JT, Castellanos FX, Di Martino A, Kelly C, Heberlein K, Colcombe S, Milham MP. Imaging human connectomes at the macroscale. Nature Methods. 10: 524-39. PMID 23722212 DOI: 10.1038/nmeth.2482  0.96
2013 Vogelstein JT, Gray Roncal W, Vogelstein RJ, Priebe CE. Graph classification using signal-subgraphs: applications in statistical connectomics. Ieee Transactions On Pattern Analysis and Machine Intelligence. 35: 1539-51. PMID 23681985 DOI: 10.1109/TPAMI.2012.235  0.96
2013 Cornelis B, Yang Y, Vogelstein JT, Dooms A, Daubechies I, Dunson D. Bayesian crack detection in ultra high resolution multimodal images of paintings 2013 18th International Conference On Digital Signal Processing, Dsp 2013. DOI: 10.1109/ICDSP.2013.6622710  0.96
2013 Roncal WG, Koterba ZH, Mhembere D, Kleissas DM, Vogelstein JT, Burns R, Bowles AR, Donavos DK, Ryman S, Jung RE, Wu L, Calhoun V, Vogelstein RJ. MIGRAINE: MRI graph reliability analysis and inference for connectomics 2013 Ieee Global Conference On Signal and Information Processing, Globalsip 2013 - Proceedings. 313-316. DOI: 10.1109/GlobalSIP.2013.6736878  0.96
2013 Mhembere D, Gray Roncal W, Sussman D, Priebe CE, Jung R, Ryman S, Vogelstein RJ, Vogelstein JT, Burns R. Computing scalable multivariate glocal invariants of large (brain-) graphs 2013 Ieee Global Conference On Signal and Information Processing, Globalsip 2013 - Proceedings. 297-300. DOI: 10.1109/GlobalSIP.2013.6736874  0.96
2013 Priebe CE, Vogelstein J, Bock D. Optimizing the quantity/quality trade-off in connectome inference Communications in Statistics - Theory and Methods. 42: 3455-3462. DOI: 10.1080/03610926.2011.630768  0.96
2013 Dai D, He H, Vogelstein JT, Hou Z. Accurate prediction of AD patients using cortical thickness networks Machine Vision and Applications. 24: 1445-1457. DOI: 10.1007/s00138-012-0462-0  0.96
2013 Kulkarni V, Pudipeddi JS, Akoglu L, Vogelstein JT, Jacob Vogelstein R, Ryman S, Jung RE. Sex differences in the human connectome Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8211: 82-91. DOI: 10.1007/978-3-319-02753-1_9  0.96
2013 Petralia F, Vogelstein J, Dunson DB. Multiscale dictionary learning for estimating conditional distributions Advances in Neural Information Processing Systems 0.96
2012 Gray WR, Bogovic JA, Vogelstein JT, Landman BA, Prince JL, Vogelstein RJ. Magnetic resonance connectome automated pipeline: an overview. Ieee Pulse. 3: 42-8. PMID 22481745 DOI: 10.1109/MPUL.2011.2181023  0.96
2012 Roberts NJ, Vogelstein JT, Parmigiani G, Kinzler KW, Vogelstein B, Velculescu VE. The predictive capacity of personal genome sequencing. Science Translational Medicine. 4: 133ra58. PMID 22472521 DOI: 10.1126/scitranslmed.3003380  0.96
2012 Fishkind DE, Sussman DL, Tang M, Vogelstein JT, Priebe CE. Consistent adjacency-spectral partitioning for the stochastic block model when the model parameters are unknown Siam Journal On Matrix Analysis and Applications. 34: 23-39. DOI: 10.1137/120875600  0.96
2012 Vogelstein B, Roberts NJ, Vogelstein JT, Parmigiani G, Kinzler KW, Velculescu VE. Response to comments on "The predictive capacity of personal genome sequencing" Science Translational Medicine. 4. DOI: 10.1126/scitranslmed.3004246  0.96
2011 Vogelstein JT, Vogelstein RJ, Priebe CE. Are mental properties supervenient on brain properties? Scientific Reports. 1: 100. PMID 22355618 DOI: 10.1038/srep00100  0.96
2011 Yuste R, MacLean J, Vogelstein J, Paninski L. Imaging action potentials with calcium indicators. Cold Spring Harbor Protocols. 2011: 985-9. PMID 21807854 DOI: 10.1101/pdb.prot5650  0.96
2011 Hofer SB, Ko H, Pichler B, Vogelstein J, Ros H, Zeng H, Lein E, Lesica NA, Mrsic-Flogel TD. Differential connectivity and response dynamics of excitatory and inhibitory neurons in visual cortex. Nature Neuroscience. 14: 1045-52. PMID 21765421 DOI: 10.1038/nn.2876  0.96
2011 Mishchenko Y, Vogelstein JT, Paninski L. A bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data Annals of Applied Statistics. 5: 1229-1261. DOI: 10.1214/09-AOAS303  0.96
2010 Vogelstein JT, Packer AM, Machado TA, Sippy T, Babadi B, Yuste R, Paninski L. Fast nonnegative deconvolution for spike train inference from population calcium imaging. Journal of Neurophysiology. 104: 3691-704. PMID 20554834 DOI: 10.1152/jn.01073.2009  0.96
2010 Paninski L, Ahmadian Y, Ferreira DG, Koyama S, Rahnama Rad K, Vidne M, Vogelstein J, Wu W. A new look at state-space models for neural data. Journal of Computational Neuroscience. 29: 107-26. PMID 19649698 DOI: 10.1007/s10827-009-0179-x  0.96
2009 Vogelstein JT, Watson BO, Packer AM, Yuste R, Jedynak B, Paninski L. Spike inference from calcium imaging using sequential Monte Carlo methods. Biophysical Journal. 97: 636-55. PMID 19619479 DOI: 10.1016/j.bpj.2008.08.005  0.96
2009 Huys QJM, Vogelstein JT, Dayan P. Psychiatry: Insights into depression through normative decision-making models Advances in Neural Information Processing Systems 21 - Proceedings of the 2008 Conference. 729-736.  0.96
2007 Vogelstein RJ, Mallik U, Vogelstein JT, Cauwenberghs G. Dynamically reconfigurable silicon array of spiking neurons with conductance-based synapses. Ieee Transactions On Neural Networks / a Publication of the Ieee Neural Networks Council. 18: 253-65. PMID 17278476 DOI: 10.1109/TNN.2006.883007  0.96
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