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Joshua Tzvi Vogelstein - Publications

Affiliations: 
Johns Hopkins University, Baltimore, MD 
Area:
computational, circuit inference, fluorescence imaging
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56/117 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Pedigo BD, Winding M, Priebe CE, Vogelstein JT. Bisected graph matching improves automated pairing of bilaterally homologous neurons from connectomes. Network Neuroscience (Cambridge, Mass.). 7: 522-538. PMID 37409218 DOI: 10.1162/netn_a_00287  0.604
2023 Pedigo BD, Powell M, Bridgeford EW, Winding M, Priebe CE, Vogelstein JT. Generative network modeling reveals quantitative definitions of bilateral symmetry exhibited by a whole insect brain connectome. Elife. 12. PMID 36976249 DOI: 10.7554/eLife.83739  0.534
2023 Winding M, Pedigo BD, Barnes CL, Patsolic HG, Park Y, Kazimiers T, Fushiki A, Andrade IV, Khandelwal A, Valdes-Aleman J, Li F, Randel N, Barsotti E, Correia A, Fetter RD, ... ... Vogelstein JT, et al. The connectome of an insect brain. Science (New York, N.Y.). 379: eadd9330. PMID 36893230 DOI: 10.1126/science.add9330  0.523
2021 Mehta K, Goldin RF, Marchette D, Vogelstein JT, Priebe CE, Ascoli GA. Neuronal classification from network connectivity via adjacency spectral embedding. Network Neuroscience (Cambridge, Mass.). 5: 689-710. PMID 34746623 DOI: 10.1162/netn_a_00195  0.573
2021 Arroyo J, Athreya A, Cape J, Chen G, Priebe CE, Vogelstein JT. Inference for Multiple Heterogeneous Networks with a Common Invariant Subspace. Journal of Machine Learning Research : Jmlr. 22: 1-49. PMID 34650343  0.615
2021 Bridgeford EW, Wang S, Wang Z, Xu T, Craddock C, Dey J, Kiar G, Gray-Roncal W, Colantuoni C, Douville C, Noble S, Priebe CE, Caffo B, Milham M, Zuo XN, ... ... Vogelstein JT, et al. Eliminating accidental deviations to minimize generalization error and maximize replicability: Applications in connectomics and genomics. Plos Computational Biology. 17: e1009279. PMID 34529652 DOI: 10.1371/journal.pcbi.1009279  0.519
2020 Hong SJ, Xu T, Nikolaidis A, Smallwood J, Margulies DS, Bernhardt B, Vogelstein J, Milham MP. Toward a Connectivity Gradient-based Framework for Reproducible Biomarker Discovery. Neuroimage. 117322. PMID 32882388 DOI: 10.1016/J.Neuroimage.2020.117322  0.366
2020 Schulz MA, Yeo BTT, Vogelstein JT, Mourao-Miranada J, Kather JN, Kording K, Richards B, Bzdok D. Different scaling of linear models and deep learning in UKBiobank brain images versus machine-learning datasets. Nature Communications. 11: 4238. PMID 32843633 DOI: 10.1038/S41467-020-18037-Z  0.3
2020 Wang N, Anderson RJ, Ashbrook DG, Gopalakrishnan V, Park Y, Priebe CE, Qi Y, Laoprasert R, Vogelstein JT, Williams RW, Johnson GA. Variability and Heritability of Mouse Brain Structure: Microscopic MRI Atlases and Connectomes for Diverse Strains. Neuroimage. 117274. PMID 32818613 DOI: 10.1016/J.Neuroimage.2020.117274  0.556
2020 Nenning KH, Xu T, Schwartz E, Arroyo J, Woehrer A, Franco AR, Vogelstein JT, Margulies DS, Liu H, Smallwood J, Milham MP, Langs G. Joint Embedding: A scalable alignment to compare individuals in a connectivity space. Neuroimage. 117232. PMID 32771618 DOI: 10.1016/J.Neuroimage.2020.117232  0.321
2020 Franca G, Rizzo M, Vogelstein JT. Kernel k-Groups via Hartigan's Method. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 32750776 DOI: 10.1109/TPAMI.2020.2998120  0.305
2020 Hong SJ, Vogelstein JT, Gozzi A, Bernhardt BC, Yeo BTT, Milham MP, Di Martino A. Toward Neurosubtypes in Autism. Biological Psychiatry. 88: 111-128. PMID 32553193 DOI: 10.1016/j.biopsych.2020.03.022  0.361
2020 Charles AS, Falk B, Turner N, Pereira TD, Tward D, Pedigo BD, Chung J, Burns R, Ghosh SS, Kebschull JM, Silversmith W, Vogelstein JT. Toward Community-Driven Big Open Brain Science: Open Big Data and Tools for Structure, Function, and Genetics. Annual Review of Neuroscience. PMID 32283996 DOI: 10.1146/Annurev-Neuro-100119-110036  0.334
2020 Nikolaidis A, Heinsfeld AS, Xu T, Bellec P, Vogelstein J, Milham M. Bagging improves reproducibility of functional parcellation of the human brain. Neuroimage. 116678. PMID 32119986 DOI: 10.1016/J.Neuroimage.2020.116678  0.334
2019 Wang S, Arroyo J, Vogelstein JT, Priebe CE. Joint Embedding of Graphs. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 31675314 DOI: 10.1109/Tpami.2019.2948619  0.64
2019 Vogelstein JT, Bridgeford EW, Pedigo BD, Chung J, Levin K, Mensh B, Priebe CE. Connectal coding: discovering the structures linking cognitive phenotypes to individual histories. Current Opinion in Neurobiology. 55: 199-212. PMID 31102987 DOI: 10.1016/J.Conb.2019.04.005  0.542
2019 Priebe CE, Park Y, Vogelstein JT, Conroy JM, Lyzinski V, Tang M, Athreya A, Cape J, Bridgeford E. On a two-truths phenomenon in spectral graph clustering. Proceedings of the National Academy of Sciences of the United States of America. PMID 30850525 DOI: 10.1073/Pnas.1814462116  0.577
2019 Vogelstein JT, Bridgeford EW, Wang Q, Priebe CE, Maggioni M, Shen C. Discovering and deciphering relationships across disparate data modalities. Elife. 8. PMID 30644820 DOI: 10.7554/Elife.41690  0.597
2019 Lee Y, Shen C, Priebe CE, Vogelstein JT. Network dependence testing via diffusion maps and distance-based correlations Biometrika. 106: 857-873. DOI: 10.1093/Biomet/Asz045  0.59
2019 Shen C, Priebe CE, Vogelstein JT. From Distance Correlation to Multiscale Graph Correlation Journal of the American Statistical Association. 115: 280-291. DOI: 10.1080/01621459.2018.1543125  0.569
2018 Tang R, Ketcha M, Badea A, Calabrese ED, Margulies DS, Vogelstein JT, Priebe CE, Sussman DL. Connectome Smoothing via Low-rank Approximations. Ieee Transactions On Medical Imaging. PMID 30530318 DOI: 10.1109/Tmi.2018.2885968  0.62
2018 Vogelstein JT, Bridgeford EW, Wang Q, Priebe CE, Maggioni M, Shen C. Author response: Discovering and deciphering relationships across disparate data modalities Elife. DOI: 10.7554/Elife.41690.030  0.5
2018 Zheng D, Mhembere D, Vogelstein JT, Priebe CE, Burns R. FlashR Acm Sigplan Notices. 53: 183-194. DOI: 10.1145/3200691.3178501  0.477
2017 Binkiewicz N, Vogelstein JT, Rohe K. Covariate-assisted spectral clustering. Biometrika. 104: 361-377. PMID 29430032 DOI: 10.1093/biomet/asx008  0.386
2017 Chen S, Liu K, Yang Y, Xu Y, Lee S, Lindquist M, Caffo BS, Vogelstein JT. An M-estimator for reduced-rank system identification. Pattern Recognition Letters. 86: 76-81. PMID 29391659 DOI: 10.1016/J.Patrec.2016.12.012  0.348
2017 Hildebrand DGC, Cicconet M, Torres RM, Choi W, Quan TM, Moon J, Wetzel AW, Scott Champion A, Graham BJ, Randlett O, Plummer GS, Portugues R, Bianco IH, Saalfeld S, Baden AD, ... ... Vogelstein JT, et al. Whole-brain serial-section electron microscopy in larval zebrafish. Nature. PMID 28489821 DOI: 10.1038/Nature22356  0.349
2017 Simhal AK, Aguerrebere C, Collman F, Vogelstein JT, Micheva KD, Weinberg RJ, Smith SJ, Sapiro G. Probabilistic fluorescence-based synapse detection. Plos Computational Biology. 13: e1005493. PMID 28414801 DOI: 10.1371/Journal.Pcbi.1005493  0.303
2017 Zheng D, Mhembere D, Lyzinski V, Vogelstein JT, Priebe CE, Burns R. Semi-External Memory Sparse Matrix Multiplication for Billion-Node Graphs Ieee Transactions On Parallel and Distributed Systems. 28: 1470-1483. DOI: 10.1109/Tpds.2016.2618791  0.541
2017 Durante D, Dunson DB, Vogelstein JT. Nonparametric Bayes Modeling of Populations of Networks Journal of the American Statistical Association. 112: 1516-1530. DOI: 10.1080/01621459.2016.1219260  0.339
2017 Shen C, Vogelstein JT, Priebe CE. Manifold matching using shortest-path distance and joint neighborhood selection Pattern Recognition Letters. 92: 41-48. DOI: 10.1016/J.Patrec.2017.04.005  0.616
2016 Vogelstein JT, Mensh B, Häusser M, Spruston N, Evans AC, Kording K, Amunts K, Ebell C, Muller J, Telefont M, Hill S, Koushika SP, Calì C, Valdés-Sosa PA, Littlewood PB, et al. To the Cloud! A Grassroots Proposal to Accelerate Brain Science Discovery Neuron. 92: 622-627. PMID 27810005 DOI: 10.1016/J.Neuron.2016.10.033  0.33
2016 Chen L, Vogelstein JT, Lyzinski V, Priebe CE. A joint graph inference case study: the C. elegans chemical and electrical connectomes. Worm. 5: e1142041. PMID 27386164 DOI: 10.1080/21624054.2016.1142041  0.576
2016 Airan RD, Vogelstein JT, Pillai JJ, Caffo B, Pekar JJ, Sair HI. Factors affecting characterization and localization of interindividual differences in functional connectivity using MRI. Human Brain Mapping. PMID 27012314 DOI: 10.1002/Hbm.23150  0.326
2016 Lyzinski V, Fishkind DE, Fiori M, Vogelstein JT, Priebe CE, Sapiro G. Graph Matching: Relax at Your Own Risk. Ieee Transactions On Pattern Analysis and Machine Intelligence. 38: 60-73. PMID 26656578 DOI: 10.1109/Tpami.2015.2424894  0.61
2016 Kiar G, Roncal WG, Mehmbere D, Bridgeford E, Wang S, Priebe CE, Burns R, Vogelstein JT. GruteDB: an optimized open-source distributed DTI pipeline estimates brain graphs from >5,000 publicly-available scans enabling mega-analysis F1000research. 5. DOI: 10.7490/F1000Research.1113325.1  0.604
2016 Koutra D, Shah N, Vogelstein JT, Gallagher B, Faloutsos C. DELTACON: Principled massive-graph similarity function with attribution Acm Transactions On Knowledge Discovery From Data. 10. DOI: 10.1145/2824443  0.459
2016 Kutten KS, Vogelstein JT, Charon N, Ye L, Deisseroth K, Miller MI. Deformably registering and annotating whole CLARITY brains to an atlas via masked LDDMM Proceedings of Spie. 9896: 989616. DOI: 10.1117/12.2227444  0.346
2015 Chen L, Shen C, Vogelstein J, Priebe CE. Robust Vertex Classification. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 26340770 DOI: 10.1109/Tpami.2015.2456913  0.618
2015 Gray Roncal WR, Kleissas DM, Vogelstein JT, Manavalan P, Lillaney K, Pekala M, Burns R, Vogelstein RJ, Priebe CE, Chevillet MA, Hager GD. An automated images-to-graphs framework for high resolution connectomics. Frontiers in Neuroinformatics. 9: 20. PMID 26321942 DOI: 10.3389/Fninf.2015.00020  0.639
2015 Kasthuri N, Hayworth KJ, Berger DR, Schalek RL, Conchello JA, Knowles-Barley S, Lee D, Vázquez-Reina A, Kaynig V, Jones TR, Roberts M, Morgan JL, Tapia JC, Seung HS, Roncal WG, ... Vogelstein JT, et al. Saturated Reconstruction of a Volume of Neocortex. Cell. 162: 648-61. PMID 26232230 DOI: 10.1016/J.Cell.2015.06.054  0.534
2015 Vogelstein JT, Conroy JM, Lyzinski V, Podrazik LJ, Kratzer SG, Harley ET, Fishkind DE, Vogelstein RJ, Priebe CE. Fast approximate quadratic programming for graph matching. Plos One. 10: e0121002. PMID 25886624 DOI: 10.1371/Journal.Pone.0121002  0.627
2015 Priebe CE, Sussman DL, Tang M, Vogelstein JT. Statistical Inference on Errorfully Observed Graphs Journal of Computational and Graphical Statistics. 24: 930-953. DOI: 10.1080/10618600.2014.951049  0.607
2015 Lyzinski V, Sussman DL, Fishkind DE, Pao H, Chen L, Vogelstein JT, Park Y, Priebe CE. Spectral clustering for divide-and-conquer graph matching Parallel Computing. 47: 70-87. DOI: 10.1016/j.parco.2015.03.004  0.543
2015 Kasthuri N, Hayworth KJ, Berger DR, Schalek RL, Conchello JA, Knowles-Barley S, Lee D, Vázquez-Reina A, Kaynig V, Jones TR, Roberts M, Morgan JL, Tapia JC, Seung HS, Roncal WG, ... Vogelstein JT, et al. Saturated Reconstruction of a Volume of Neocortex Cell. 162: 648-661. DOI: 10.1016/j.cell.2015.06.054  0.487
2015 Vogelstein JT, Priebe CE. Shuffled Graph Classification: Theory and Connectome Applications Journal of Classification. 32: 3-20. DOI: 10.1007/S00357-015-9170-6  0.636
2014 Vogelstein JT, Park Y, Ohyama T, Kerr RA, Truman JW, Priebe CE, Zlatic M. Discovery of brainwide neural-behavioral maps via multiscale unsupervised structure learning. Science (New York, N.Y.). 344: 386-92. PMID 24674869 DOI: 10.1126/Science.1250298  0.526
2013 Craddock RC, Jbabdi S, Yan CG, Vogelstein JT, Castellanos FX, Di Martino A, Kelly C, Heberlein K, Colcombe S, Milham MP. Imaging human connectomes at the macroscale. Nature Methods. 10: 524-39. PMID 23722212 DOI: 10.1038/Nmeth.2482  0.317
2013 Vogelstein JT, Gray Roncal W, Vogelstein RJ, Priebe CE. Graph classification using signal-subgraphs: applications in statistical connectomics. Ieee Transactions On Pattern Analysis and Machine Intelligence. 35: 1539-51. PMID 23681985 DOI: 10.1109/Tpami.2012.235  0.625
2013 Mhembere D, Gray Roncal W, Sussman D, Priebe CE, Jung R, Ryman S, Vogelstein RJ, Vogelstein JT, Burns R. Computing scalable multivariate glocal invariants of large (brain-) graphs 2013 Ieee Global Conference On Signal and Information Processing, Globalsip 2013 - Proceedings. 297-300. DOI: 10.1109/GlobalSIP.2013.6736874  0.586
2013 Priebe CE, Vogelstein J, Bock D. Optimizing the quantity/quality trade-off in connectome inference Communications in Statistics - Theory and Methods. 42: 3455-3462. DOI: 10.1080/03610926.2011.630768  0.59
2012 Gray WR, Bogovic JA, Vogelstein JT, Landman BA, Prince JL, Vogelstein RJ. Magnetic resonance connectome automated pipeline: an overview. Ieee Pulse. 3: 42-8. PMID 22481745 DOI: 10.1109/Mpul.2011.2181023  0.302
2012 Fishkind DE, Sussman DL, Tang M, Vogelstein JT, Priebe CE. Consistent adjacency-spectral partitioning for the stochastic block model when the model parameters are unknown Siam Journal On Matrix Analysis and Applications. 34: 23-39. DOI: 10.1137/120875600  0.575
2011 Vogelstein JT, Vogelstein RJ, Priebe CE. Are mental properties supervenient on brain properties? Scientific Reports. 1: 100. PMID 22355618 DOI: 10.1038/Srep00100  0.586
2011 Vogelstein JT. Q&A: What is the Open Connectome Project? Neural Systems & Circuits. 1: 16. PMID 22329952 DOI: 10.1186/2042-1001-1-16  0.356
2011 Mishchenko Y, Vogelstein JT, Paninski L. A bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data Annals of Applied Statistics. 5: 1229-1261. DOI: 10.1214/09-Aoas303  0.361
2010 Paninski L, Ahmadian Y, Ferreira DG, Koyama S, Rahnama Rad K, Vidne M, Vogelstein J, Wu W. A new look at state-space models for neural data. Journal of Computational Neuroscience. 29: 107-26. PMID 19649698 DOI: 10.1007/S10827-009-0179-X  0.309
Low-probability matches (unlikely to be authored by this person)
2013 Koutra D, Gong Y, Ryman S, Jung R, Vogelstein JT, Faloutsos C. Are all brains wired equally F1000research. 4. DOI: 10.7490/F1000Research.1094302.1  0.298
2014 Carlson DE, Vogelstein JT, Qisong Wu, Wenzhao Lian, Mingyuan Zhou, Stoetzner CR, Kipke D, Weber D, Dunson DB, Carin L. Multichannel electrophysiological spike sorting via joint dictionary learning and mixture modeling. Ieee Transactions On Bio-Medical Engineering. 61: 41-54. PMID 23912463 DOI: 10.1109/Tbme.2013.2275751  0.296
2017 Kiar G, Gorgolewski KJ, Kleissas D, Roncal WG, Litt B, Wandell B, Poldrack RA, Wiener M, Vogelstein RJ, Burns R, Vogelstein JT. Science In the Cloud (SIC): A use case in MRI Connectomics. Gigascience. PMID 28327935 DOI: 10.1093/Gigascience/Gix013  0.295
2014 Burns R, Vogelstein JT, Szalay AS. From cosmos to connectomes: the evolution of data-intensive science. Neuron. 83: 1249-52. PMID 25233306 DOI: 10.1016/J.Neuron.2014.08.045  0.292
2011 Hofer SB, Ko H, Pichler B, Vogelstein J, Ros H, Zeng H, Lein E, Lesica NA, Mrsic-Flogel TD. Differential connectivity and response dynamics of excitatory and inhibitory neurons in visual cortex. Nature Neuroscience. 14: 1045-52. PMID 21765421 DOI: 10.1038/Nn.2876  0.291
2014 Sweeney EM, Vogelstein JT, Cuzzocreo JL, Calabresi PA, Reich DS, Crainiceanu CM, Shinohara RT. A comparison of supervised machine learning algorithms and feature vectors for MS lesion segmentation using multimodal structural MRI. Plos One. 9: e95753. PMID 24781953 DOI: 10.1371/Journal.Pone.0095753  0.286
2007 Vogelstein RJ, Mallik U, Vogelstein JT, Cauwenberghs G. Dynamically reconfigurable silicon array of spiking neurons with conductance-based synapses. Ieee Transactions On Neural Networks / a Publication of the Ieee Neural Networks Council. 18: 253-65. PMID 17278476 DOI: 10.1109/Tnn.2006.883007  0.284
2013 Roncal WG, Koterba ZH, Mhembere D, Kleissas DM, Vogelstein JT, Burns R, Bowles AR, Donavos DK, Ryman S, Jung RE, Wu L, Calhoun V, Vogelstein RJ. MIGRAINE: MRI graph reliability analysis and inference for connectomics 2013 Ieee Global Conference On Signal and Information Processing, Globalsip 2013 - Proceedings. 313-316. DOI: 10.1109/GlobalSIP.2013.6736878  0.283
2010 Vogelstein JT, Packer AM, Machado TA, Sippy T, Babadi B, Yuste R, Paninski L. Fast nonnegative deconvolution for spike train inference from population calcium imaging. Journal of Neurophysiology. 104: 3691-704. PMID 20554834 DOI: 10.1152/Jn.01073.2009  0.278
2011 Yuste R, MacLean J, Vogelstein J, Paninski L. Imaging action potentials with calcium indicators. Cold Spring Harbor Protocols. 2011: 985-9. PMID 21807854 DOI: 10.1101/Pdb.Prot5650  0.271
2009 Vogelstein JT, Watson BO, Packer AM, Yuste R, Jedynak B, Paninski L. Spike inference from calcium imaging using sequential Monte Carlo methods. Biophysical Journal. 97: 636-55. PMID 19619479 DOI: 10.1016/J.Bpj.2008.08.005  0.271
2014 Weiler NC, Collman F, Vogelstein JT, Burns R, Smith SJ. Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography. Scientific Data. 1: 140046. PMID 25977797 DOI: 10.1038/Sdata.2014.46  0.269
2015 Harris KM, Spacek J, Bell ME, Parker PH, Lindsey LF, Baden AD, Vogelstein JT, Burns R. A resource from 3D electron microscopy of hippocampal neuropil for user training and tool development. Scientific Data. 2: 150046. PMID 26347348 DOI: 10.1038/Sdata.2015.46  0.262
2020 Xu T, Nenning KH, Schwartz E, Hong SJ, Vogelstein JT, Goulas A, Fair DA, Schroeder CE, Margulies DS, Smallwood J, Milham MP, Langs G. Cross-species Functional Alignment Reveals Evolutionary Hierarchy Within the Connectome. Neuroimage. 117346. PMID 32916286 DOI: 10.1016/J.Neuroimage.2020.117346  0.262
2017 Durante D, Dunson DB, Vogelstein JT. Rejoinder: Nonparametric Bayes Modeling of Populations of Networks Journal of the American Statistical Association. 112: 1547-1552. DOI: 10.1080/01621459.2017.1395643  0.255
2012 Roberts NJ, Vogelstein JT, Parmigiani G, Kinzler KW, Vogelstein B, Velculescu VE. The predictive capacity of personal genome sequencing. Science Translational Medicine. 4: 133ra58. PMID 22472521 DOI: 10.1126/Scitranslmed.3003380  0.242
2018 Vogelstein JT, Perlman E, Falk B, Baden A, Gray Roncal W, Chandrashekhar V, Collman F, Seshamani S, Patsolic JL, Lillaney K, Kazhdan M, Hider R, Pryor D, Matelsky J, Gion T, et al. A community-developed open-source computational ecosystem for big neuro data. Nature Methods. PMID 30377345 DOI: 10.1038/S41592-018-0181-1  0.239
2021 Vogelstein JT, Bridgeford EW, Tang M, Zheng D, Douville C, Burns R, Maggioni M. Supervised dimensionality reduction for big data. Nature Communications. 12: 2872. PMID 34001899 DOI: 10.1038/s41467-021-23102-2  0.227
2023 Athey TL, Wright MA, Pavlovic M, Chandrashekhar V, Deisseroth K, Miller MI, Vogelstein JT. BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes. Biorxiv : the Preprint Server For Biology. PMID 36909631 DOI: 10.1101/2023.02.28.530429  0.223
2015 Kiar G, Roncal WG, Mhembere D, Bridgeford E, Clark D, Milham M, Craddock C, Burns R, Vogelstein JT. Community Connectomics via Cloud Computing Utilizing m2g: a Reference Pipeline F1000research. 5. DOI: 10.7490/F1000Research.1113326.1  0.223
2003 Vogelstein JT, Snyder LH, Angelaki DE. Accuracy of saccades to remembered targets as a function of body orientation in space. Journal of Neurophysiology. 90: 521-4. PMID 12843314 DOI: 10.1152/jn.00141.2003  0.217
2013 Petralia F, Vogelstein J, Dunson DB. Multiscale dictionary learning for estimating conditional distributions Advances in Neural Information Processing Systems.  0.211
1999 Vogelstein JT. NIH Grant Application Testing the effects of genetic variations using MINIME technology Science. 286: 2300-2301. DOI: 10.1126/Science.286.5448.2300  0.211
2023 Athey T, Tward D, Mueller U, Younes L, Vogelstein J, Miller M. Preserving Derivative Information while Transforming Neuronal Curves. Research Square. PMID 37034653 DOI: 10.21203/rs.3.rs-2705948/v1  0.207
2023 Athey TL, Tward DJ, Mueller U, Younes L, Vogelstein JT, Miller MI. Preserving Derivative Information while Transforming Neuronal Curves. Arxiv. PMID 36994162  0.207
2013 Burns R, Roncal WG, Kleissas D, Lillaney K, Manavalan P, Perlman E, Berger DR, Bock DD, Chung K, Grosenick L, Kasthuri N, Weiler NC, Deisseroth K, Kazhdan M, Lichtman J, ... ... Vogelstein JT, et al. The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience. Scientific and Statistical Database Management : International Conference, Ssdbm ... : Proceedings. International Conference On Scientific and Statistical Database Management. PMID 24401992 DOI: 10.1145/2484838.2484870  0.205
2018 Cohen JD, Li L, Wang Y, Thoburn C, Afsari B, Danilova L, Douville C, Javed AA, Wong F, Mattox A, Hruban RH, Wolfgang CL, Goggins MG, Dal Molin M, Wang TL, ... ... Vogelstein JT, et al. Detection and localization of surgically resectable cancers with a multi-analyte blood test. Science (New York, N.Y.). PMID 29348365 DOI: 10.1126/Science.Aar3247  0.205
2012 Vogelstein B, Roberts NJ, Vogelstein JT, Parmigiani G, Kinzler KW, Velculescu VE. Response to comments on "The predictive capacity of personal genome sequencing" Science Translational Medicine. 4. DOI: 10.1126/Scitranslmed.3004246  0.205
2023 Athey TL, Tward DJ, Mueller U, Younes L, Vogelstein JT, Miller MI. Preserving Derivative Information while Transforming Neuronal Curves. Neuroinformatics. PMID 38036915 DOI: 10.1007/s12021-023-09648-0  0.204
2017 Wang Q, Zhang M, Tomita T, Vogelstein JT, Zhou S, Papadopoulos N, Kinzler KW, Vogelstein B. Selected reaction monitoring approach for validating peptide biomarkers. Proceedings of the National Academy of Sciences of the United States of America. PMID 29203663 DOI: 10.1073/Pnas.1712731114  0.201
2021 Athey TL, Teneggi J, Vogelstein JT, Tward DJ, Mueller U, Miller MI. Fitting Splines to Axonal Arbors Quantifies Relationship Between Branch Order and Geometry. Frontiers in Neuroinformatics. 15: 704627. PMID 34456702 DOI: 10.3389/fninf.2021.704627  0.197
2023 Morales Pantoja IE, Smirnova L, Muotri AR, Wahlin KJ, Kahn J, Boyd JL, Gracias DH, Harris TD, Cohen-Karni T, Caffo BS, Szalay AS, Han F, Zack DJ, Etienne-Cummings R, Akwaboah A, ... ... Vogelstein JT, et al. First Organoid Intelligence (OI) workshop to form an OI community. Frontiers in Artificial Intelligence. 6: 1116870. PMID 36925616 DOI: 10.3389/frai.2023.1116870  0.195
2021 Lawrence RM, Bridgeford EW, Myers PE, Arvapalli GC, Ramachandran SC, Pisner DA, Frank PF, Lemmer AD, Nikolaidis A, Vogelstein JT. Standardizing human brain parcellations. Scientific Data. 8: 78. PMID 33686079 DOI: 10.1038/s41597-021-00849-3  0.191
2022 Athey TL, Tward DJ, Mueller U, Vogelstein JT, Miller MI. Hidden Markov modeling for maximum probability neuron reconstruction. Communications Biology. 5: 388. PMID 35468989 DOI: 10.1038/s42003-022-03320-0  0.19
2020 Cho JW, Korchmaros A, Vogelstein JT, Milham M, Xu T. Impact of Concatenating fMRI Data on Reliability for Functional Connectomics. Neuroimage. 117549. PMID 33248255 DOI: 10.1016/j.neuroimage.2020.117549  0.183
2017 Dyer EL, Gray Roncal W, Prasad JA, Fernandes HL, Gürsoy D, De Andrade V, Fezzaa K, Xiao X, Vogelstein JT, Jacobsen C, Körding KP, Kasthuri N. Quantifying Mesoscale Neuroanatomy Using X-Ray Microtomography. Eneuro. 4. PMID 29085899 DOI: 10.1523/ENEURO.0195-17.2017  0.182
2020 Konig MF, Powell MA, Staedtke V, Bai RY, Thomas DL, Fischer NM, Huq S, Khalafallah AM, Koenecke A, Xiong R, Mensh B, Papadopoulos N, Kinzler KW, Vogelstein B, Vogelstein JT, et al. Preventing cytokine storm syndrome in COVID-19 using α-1 adrenergic receptor antagonists. The Journal of Clinical Investigation. PMID 32352407 DOI: 10.1172/Jci139642  0.169
2023 Chung J, Bridgeford EW, Powell M, Vogelstein JT. Human Connectomes are Heritable. Biorxiv : the Preprint Server For Biology. PMID 37066291 DOI: 10.1101/2023.04.02.532875  0.165
2023 Athey TL, Wright MA, Pavlovic M, Chandrashekhar V, Deisseroth K, Miller MI, Vogelstein JT. BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes. Neuroinformatics. PMID 37394568 DOI: 10.1007/s12021-023-09638-2  0.153
2021 Shen C, Panda S, Vogelstein JT. The Chi-Square Test of Distance Correlation. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 31: 254-262. PMID 35707063 DOI: 10.1080/10618600.2021.1938585  0.147
2021 Graves AR, Roth RH, Tan HL, Zhu Q, Bygrave AM, Lopez-Ortega E, Hong I, Spiegel AC, Johnson RC, Vogelstein JT, Tward DJ, Miller MI, Huganir RL. Visualizing synaptic plasticity in vivo by large-scale imaging of endogenous AMPA receptors. Elife. 10. PMID 34658338 DOI: 10.7554/eLife.66809  0.145
2021 Chandrashekhar V, Tward DJ, Crowley D, Crow AK, Wright MA, Hsueh BY, Gore F, Machado TA, Branch A, Rosenblum JS, Deisseroth K, Vogelstein JT. CloudReg: automatic terabyte-scale cross-modal brain volume registration. Nature Methods. PMID 34253927 DOI: 10.1038/s41592-021-01218-z  0.141
2023 Xu T, Kiar G, Cho JW, Bridgeford EW, Nikolaidis A, Vogelstein JT, Milham MP. ReX: an integrative tool for quantifying and optimizing measurement reliability for the study of individual differences. Nature Methods. PMID 37264147 DOI: 10.1038/s41592-023-01901-3  0.136
2022 Poline JB, Kennedy DN, Sommer FT, Ascoli GA, Van Essen DC, Ferguson AR, Grethe JS, Hawrylycz MJ, Thompson PM, Poldrack RA, Ghosh SS, Keator DB, Athey TL, Vogelstein JT, Mayberg HS, et al. Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data. Neuroinformatics. PMID 35061216 DOI: 10.1007/s12021-021-09557-0  0.122
2021 Powell M, Koenecke A, Byrd JB, Nishimura A, Konig MF, Xiong R, Mahmood S, Mucaj V, Bettegowda C, Rose L, Tamang S, Sacarny A, Caffo B, Athey S, Stuart EA, ... Vogelstein JT, et al. Ten Rules for Conducting Retrospective Pharmacoepidemiological Analyses: Example COVID-19 Study. Frontiers in Pharmacology. 12: 700776. PMID 34393782 DOI: 10.3389/fphar.2021.700776  0.115
2023 Xiong R, Koenecke A, Powell M, Shen Z, Vogelstein JT, Athey S. Federated causal inference in heterogeneous observational data. Statistics in Medicine. PMID 37553084 DOI: 10.1002/sim.9868  0.109
2013 Dai D, He H, Vogelstein JT, Hou Z. Accurate prediction of AD patients using cortical thickness networks Machine Vision and Applications. 24: 1445-1457. DOI: 10.1007/s00138-012-0462-0  0.079
2021 Milham MP, Vogelstein J, Xu T. Removing the Reliability Bottleneck in Functional Magnetic Resonance Imaging Research to Achieve Clinical Utility. Jama Psychiatry. PMID 33439234 DOI: 10.1001/jamapsychiatry.2020.4272  0.07
2021 Momennejad I, Krakauer JW, Sun C, Yezerets E, Rajan K, Vogelstein JT, Wyble B. The Learning Salon: Toward a new participatory science. Neuron. PMID 34559982 DOI: 10.1016/j.neuron.2021.08.023  0.059
2019 Son JJ, Clucas JC, White C, Krishnakumar A, Vogelstein JT, Milham MP, Klein A. Thermal sensors improve wrist-worn position tracking. Npj Digital Medicine. 2: 15. PMID 31304363 DOI: 10.1038/s41746-019-0092-2  0.057
2013 Kulkarni V, Pudipeddi JS, Akoglu L, Vogelstein JT, Jacob Vogelstein R, Ryman S, Jung RE. Sex differences in the human connectome Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8211: 82-91. DOI: 10.1007/978-3-319-02753-1_9  0.052
2013 Cornelis B, Yang Y, Vogelstein JT, Dooms A, Daubechies I, Dunson D. Bayesian crack detection in ultra high resolution multimodal images of paintings 2013 18th International Conference On Digital Signal Processing, Dsp 2013. DOI: 10.1109/ICDSP.2013.6622710  0.046
2021 Koenecke A, Powell M, Xiong R, Shen Z, Fischer N, Huq S, Khalafallah AM, Trevisan M, Sparen P, Carrero JJ, Nishimura A, Caffo B, Stuart EA, Bai R, Staedtke V, ... ... Vogelstein JT, et al. Alpha-1 adrenergic receptor antagonists to prevent hyperinflammation and death from lower respiratory tract infection. Elife. 10. PMID 34114951 DOI: 10.7554/eLife.61700  0.03
2009 Huys QJM, Vogelstein JT, Dayan P. Psychiatry: Insights into depression through normative decision-making models Advances in Neural Information Processing Systems 21 - Proceedings of the 2008 Conference. 729-736.  0.03
2021 Rose L, Graham L, Koenecke A, Powell M, Xiong R, Shen Z, Mench B, Kinzler KW, Bettegowda C, Vogelstein B, Athey S, Vogelstein JT, Konig MF, Wagner TH. The Association Between Alpha-1 Adrenergic Receptor Antagonists and In-Hospital Mortality From COVID-19. Frontiers in Medicine. 8: 637647. PMID 33869251 DOI: 10.3389/fmed.2021.637647  0.028
2020 Rose L, Graham L, Koenecke A, Powell M, Xiong R, Shen Z, Kinzler KW, Bettegowda C, Vogelstein B, Konig MF, Athey S, Vogelstein JT, Wagner TH. The Association Between Alpha-1 Adrenergic Receptor Antagonists and In-Hospital Mortality from COVID-19. Medrxiv : the Preprint Server For Health Sciences. PMID 33398294 DOI: 10.1101/2020.12.18.20248346  0.026
2022 Powell M, Clark C, Alyakin A, Vogelstein JT, Hart B. Exploration of Residual Confounding in Analyses of Associations of Metformin Use and Outcomes in Adults With Type 2 Diabetes. Jama Network Open. 5: e2241505. PMID 36367726 DOI: 10.1001/jamanetworkopen.2022.41505  0.026
2020 Vogelstein JT, Powell M, Koenecke A, Xiong R, Fischer N, Huq S, Khalafallah AM, Caffo B, Stuart EA, Papadopoulos N, Kinzler KW, Vogelstein B, Zhou S, Bettegowda C, Konig MF, et al. Alpha-1 adrenergic receptor antagonists for preventing acute respiratory distress syndrome and death from cytokine storm syndrome. Arxiv. PMID 32550250  0.018
2022 Li S, Jun T, Tyler J, Schadt E, Kao YH, Wang Z, Konig MF, Bettegowda C, Vogelstein JT, Papadopoulos N, Parsons RE, Chen R, Schadt EE, Li L, Oh WK. Inpatient Administration of Alpha-1-Adrenergic Receptor Blocking Agents Reduces Mortality in Male COVID-19 Patients. Frontiers in Medicine. 9: 849222. PMID 35295598 DOI: 10.3389/fmed.2022.849222  0.011
2021 Thomsen RW, Christiansen CF, Heide-Jørgensen U, Vogelstein JT, Vogelstein B, Bettegowda C, Tamang S, Athey S, Sørensen HT. Association of α1-Blocker Receipt With 30-Day Mortality and Risk of Intensive Care Unit Admission Among Adults Hospitalized With Influenza or Pneumonia in Denmark. Jama Network Open. 4: e2037053. PMID 33566109 DOI: 10.1001/jamanetworkopen.2020.37053  0.01
1997 Greenspan DL, Connolly DC, Wu R, Lei RY, Vogelstein JT, Kim YT, Mok JE, Muñoz N, Bosch FX, Shah K, Cho KR. Loss of FHIT expression in cervical carcinoma cell lines and primary tumors. Cancer Research. 57: 4692-8. PMID 9354423  0.01
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