Gary Chen, Ph.D. - Publications

Affiliations: 
University of California, Los Angeles, Los Angeles, CA 

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Keys KL, Chen GK, Lange K. Iterative hard thresholding for model selection in genome-wide association studies. Genetic Epidemiology. PMID 28875524 DOI: 10.1002/gepi.22068  0.4
2016 Sajuthi SP, Sharma NK, Chou JW, Palmer ND, McWilliams DR, Beal J, Comeau ME, Ma L, Calles-Escandon J, Demons J, Rogers S, Cherry K, Menon L, Kouba E, Davis D, ... ... Chen GK, et al. Mapping adipose and muscle tissue expression quantitative trait loci in African Americans to identify genes for type 2 diabetes and obesity. Human Genetics. PMID 27193597 DOI: 10.1007/S00439-016-1680-8  0.4
2015 Chen F, He J, Zhang J, Chen GK, Thomas V, Ambrosone CB, Bandera EV, Berndt SI, Bernstein L, Blot WJ, Cai Q, Carpten J, Casey G, Chanock SJ, Cheng I, et al. Methodological Considerations in Estimation of Phenotype Heritability Using Genome-Wide SNP Data, Illustrated by an Analysis of the Heritability of Height in a Large Sample of African Ancestry Adults. Plos One. 10: e0131106. PMID 26125186 DOI: 10.1371/Journal.Pone.0131106  0.4
2015 Chen GK, Chi EC, Ranola JM, Lange K. Convex clustering: an attractive alternative to hierarchical clustering. Plos Computational Biology. 11: e1004228. PMID 25965340 DOI: 10.1371/journal.pcbi.1004228  0.4
2014 Feng Y, Stram DO, Rhie SK, Millikan RC, Ambrosone CB, John EM, Bernstein L, Zheng W, Olshan AF, Hu JJ, Ziegler RG, Nyante S, Bandera EV, Ingles SA, Press MF, ... ... Chen GK, et al. A comprehensive examination of breast cancer risk loci in African American women. Human Molecular Genetics. 23: 5518-26. PMID 24852375 DOI: 10.1093/Hmg/Ddu252  0.4
2014 Chen CT, Liu CT, Chen GK, Andrews JS, Arnold AM, Dreyfus J, Franceschini N, Garcia ME, Kerr KF, Li G, Lohman KK, Musani SK, Nalls MA, Raffel LJ, Smith J, et al. Meta-analysis of loci associated with age at natural menopause in African-American women. Human Molecular Genetics. 23: 3327-42. PMID 24493794 DOI: 10.1093/Hmg/Ddu041  0.4
2013 Chen GK, Guo Y. Discovering epistasis in large scale genetic association studies by exploiting graphics cards. Frontiers in Genetics. 4: 266. PMID 24348518 DOI: 10.3389/fgene.2013.00266  0.4
2013 Chen GK, Chang X, Curtis C, Wang K. Precise inference of copy number alterations in tumor samples from SNP arrays. Bioinformatics (Oxford, England). 29: 2964-70. PMID 24021380 DOI: 10.1093/Bioinformatics/Btt521  0.4
2013 Demerath EW, Liu CT, Franceschini N, Chen G, Palmer JR, Smith EN, Chen CT, Ambrosone CB, Arnold AM, Bandera EV, Berenson GS, Bernstein L, Britton A, Cappola AR, Carlson CS, et al. Genome-wide association study of age at menarche in African-American women. Human Molecular Genetics. 22: 3329-46. PMID 23599027 DOI: 10.1093/Hmg/Ddt181  0.4
2013 Monda KL, Chen GK, Taylor KC, Palmer C, Edwards TL, Lange LA, Ng MC, Adeyemo AA, Allison MA, Bielak LF, Chen G, Graff M, Irvin MR, Rhie SK, Li G, et al. A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry. Nature Genetics. 45: 690-6. PMID 23583978 DOI: 10.1038/Ng.2608  0.4
2013 Pasaniuc B, Sankararaman S, Torgerson DG, Gignoux C, Zaitlen N, Eng C, Rodriguez-Cintron W, Chapela R, Ford JG, Avila PC, Rodriguez-Santana J, Chen GK, Le Marchand L, Henderson B, Reich D, et al. Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinformatics (Oxford, England). 29: 1407-15. PMID 23572411 DOI: 10.1093/Bioinformatics/Btt166  0.4
2013 Song C, Chen GK, Millikan RC, Ambrosone CB, John EM, Bernstein L, Zheng W, Hu JJ, Ziegler RG, Nyante S, Bandera EV, Ingles SA, Press MF, Deming SL, Rodriguez-Gil JL, et al. A genome-wide scan for breast cancer risk haplotypes among African American women. Plos One. 8: e57298. PMID 23468962 DOI: 10.1371/Journal.Pone.0057298  0.4
2013 Brenner DR, Brennan P, Boffetta P, Amos CI, Spitz MR, Chen C, Goodman G, Heinrich J, Bickeböller H, Rosenberger A, Risch A, Muley T, McLaughlin JR, Benhamou S, Bouchardy C, ... ... Chen G, et al. Hierarchical modeling identifies novel lung cancer susceptibility variants in inflammation pathways among 10,140 cases and 11,012 controls. Human Genetics. 132: 579-89. PMID 23370545 DOI: 10.1007/S00439-013-1270-Y  0.4
2013 Chi EC, Zhou H, Chen GK, Del Vecchyo DO, Lange K. Genotype imputation via matrix completion. Genome Research. 23: 509-18. PMID 23233546 DOI: 10.1101/gr.145821.112  0.4
2013 Chen F, Chen GK, Stram DO, Millikan RC, Ambrosone CB, John EM, Bernstein L, Zheng W, Palmer JR, Hu JJ, Rebbeck TR, Ziegler RG, Nyante S, Bandera EV, Ingles SA, et al. A genome-wide association study of breast cancer in women of African ancestry. Human Genetics. 132: 39-48. PMID 22923054 DOI: 10.1007/S00439-012-1214-Y  0.4
2012 Kim SK, Gignoux CR, Wall JD, Lum-Jones A, Wang H, Haiman CA, Chen GK, Henderson BE, Kolonel LN, Le Marchand L, Stram DO, Saxena R, Cheng I. Population genetic structure and origins of Native Hawaiians in the multiethnic cohort study. Plos One. 7: e47881. PMID 23144833 DOI: 10.1371/Journal.Pone.0047881  0.4
2012 Akamatsu S, Takahashi A, Takata R, Kubo M, Inoue T, Morizono T, Tsunoda T, Kamatani N, Haiman CA, Wan P, Chen GK, Le Marchand L, Kolonel LN, Henderson BE, Fujioka T, et al. Reproducibility, performance, and clinical utility of a genetic risk prediction model for prostate cancer in Japanese. Plos One. 7: e46454. PMID 23071574 DOI: 10.1371/Journal.Pone.0046454  0.4
2012 Siddiq A, Couch FJ, Chen GK, Lindström S, Eccles D, Millikan RC, Michailidou K, Stram DO, Beckmann L, Rhie SK, Ambrosone CB, Aittomäki K, Amiano P, Apicella C, et al. A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11. Human Molecular Genetics. 21: 5373-84. PMID 22976474 DOI: 10.1093/Hmg/Dds381  0.4
2012 Chen GK, Wang K, Stram AH, Sobel EM, Lange K. Mendel-GPU: haplotyping and genotype imputation on graphics processing units. Bioinformatics (Oxford, England). 28: 2979-80. PMID 22954633 DOI: 10.1093/bioinformatics/bts536  0.4
2012 Cheng I, Chen GK, Nakagawa H, He J, Wan P, Laurie CC, Shen J, Sheng X, Pooler LC, Crenshaw AT, Mirel DB, Takahashi A, Kubo M, Nakamura Y, Al Olama AA, et al. Evaluating genetic risk for prostate cancer among Japanese and Latinos. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. 21: 2048-58. PMID 22923026 DOI: 10.1158/1055-9965.Epi-12-0598  0.4
2012 Akamatsu S, Takata R, Haiman CA, Takahashi A, Inoue T, Kubo M, Furihata M, Kamatani N, Inazawa J, Chen GK, Le Marchand L, Kolonel LN, Katoh T, Yamano Y, Yamakado M, et al. Common variants at 11q12, 10q26 and 3p11.2 are associated with prostate cancer susceptibility in Japanese. Nature Genetics. 44: 426-9, S1. PMID 22366784 DOI: 10.1038/Ng.1104  0.4
2012 Wen W, Cho YS, Zheng W, Dorajoo R, Kato N, Qi L, Chen CH, Delahanty RJ, Okada Y, Tabara Y, Gu D, Zhu D, Haiman CA, Mo Z, Gao YT, ... ... Chen GK, et al. Meta-analysis identifies common variants associated with body mass index in east Asians. Nature Genetics. 44: 307-11. PMID 22344219 DOI: 10.1038/Ng.1087  0.4
2012 Chen GK. A scalable and portable framework for massively parallel variable selection in genetic association studies. Bioinformatics (Oxford, England). 28: 719-20. PMID 22238272 DOI: 10.1093/bioinformatics/bts015  0.4
2012 Fejerman L, Chen GK, Eng C, Huntsman S, Hu D, Williams A, Pasaniuc B, John EM, Via M, Gignoux C, Ingles S, Monroe KR, Kolonel LN, Torres-Mejía G, Pérez-Stable EJ, et al. Admixture mapping identifies a locus on 6q25 associated with breast cancer risk in US Latinas. Human Molecular Genetics. 21: 1907-17. PMID 22228098 DOI: 10.1093/Hmg/Ddr617  0.4
2012 Cheng I, Levin AM, Tai YC, Plummer S, Chen GK, Neslund-Dudas C, Casey G, Rybicki BA, Witte JS. Copy number alterations in prostate tumors and disease aggressiveness. Genes, Chromosomes & Cancer. 51: 66-76. PMID 21965145 DOI: 10.1002/Gcc.20932  0.4
2011 Haiman CA, Chen GK, Vachon CM, Canzian F, Dunning A, Millikan RC, Wang X, Ademuyiwa F, Ahmed S, Ambrosone CB, Baglietto L, Balleine R, Bandera EV, Beckmann MW, Berg CD, et al. A common variant at the TERT-CLPTM1L locus is associated with estrogen receptor-negative breast cancer. Nature Genetics. 43: 1210-4. PMID 22037553 DOI: 10.1038/Ng.985  0.4
2011 N'Diaye A, Chen GK, Palmer CD, Ge B, Tayo B, Mathias RA, Ding J, Nalls MA, Adeyemo A, Adoue V, Ambrosone CB, Atwood L, Bandera EV, Becker LC, Berndt SI, et al. Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry. Plos Genetics. 7: e1002298. PMID 21998595 DOI: 10.1371/Journal.Pgen.1002298  0.4
2011 Chen F, Chen GK, Millikan RC, John EM, Ambrosone CB, Bernstein L, Zheng W, Hu JJ, Ziegler RG, Deming SL, Bandera EV, Nyante S, Palmer JR, Rebbeck TR, Ingles SA, et al. Fine-mapping of breast cancer susceptibility loci characterizes genetic risk in African Americans. Human Molecular Genetics. 20: 4491-503. PMID 21852243 DOI: 10.1093/Hmg/Ddr367  0.4
2011 Hinch AG, Tandon A, Patterson N, Song Y, Rohland N, Palmer CD, Chen GK, Wang K, Buxbaum SG, Akylbekova EL, Aldrich MC, Ambrosone CB, Amos C, Bandera EV, Berndt SI, et al. The landscape of recombination in African Americans. Nature. 476: 170-5. PMID 21775986 DOI: 10.1038/Nature10336  0.4
2011 Haiman CA, Chen GK, Blot WJ, Strom SS, Berndt SI, Kittles RA, Rybicki BA, Isaacs WB, Ingles SA, Stanford JL, Diver WR, Witte JS, Chanock SJ, Kolb S, Signorello LB, et al. Characterizing genetic risk at known prostate cancer susceptibility loci in African Americans. Plos Genetics. 7: e1001387. PMID 21637779 DOI: 10.1371/Journal.Pgen.1001387  0.4
2011 Haiman CA, Chen GK, Blot WJ, Strom SS, Berndt SI, Kittles RA, Rybicki BA, Isaacs WB, Ingles SA, Stanford JL, Diver WR, Witte JS, Hsing AW, Nemesure B, Rebbeck TR, et al. Genome-wide association study of prostate cancer in men of African ancestry identifies a susceptibility locus at 17q21. Nature Genetics. 43: 570-3. PMID 21602798 DOI: 10.1038/Ng.839  0.4
2011 Pasaniuc B, Zaitlen N, Lettre G, Chen GK, Tandon A, Kao WH, Ruczinski I, Fornage M, Siscovick DS, Zhu X, Larkin E, Lange LA, Cupples LA, Yang Q, Akylbekova EL, et al. Enhanced statistical tests for GWAS in admixed populations: assessment using African Americans from CARe and a Breast Cancer Consortium. Plos Genetics. 7: e1001371. PMID 21541012 DOI: 10.1371/Journal.Pgen.1001371  0.4
2011 Wall JD, Jiang R, Gignoux C, Chen GK, Eng C, Huntsman S, Marjoram P. Genetic variation in Native Americans, inferred from Latino SNP and resequencing data. Molecular Biology and Evolution. 28: 2231-7. PMID 21368315 DOI: 10.1093/Molbev/Msr049  0.4
2010 Chen GK, Thomas DC. Using biological knowledge to discover higher order interactions in genetic association studies. Genetic Epidemiology. 34: 863-78. PMID 21104889 DOI: 10.1002/gepi.20542  0.4
2010 Chen GK, Millikan RC, John EM, Ambrosone CB, Bernstein L, Zheng W, Hu JJ, Chanock SJ, Ziegler RG, Bandera EV, Henderson BE, Haiman CA, Stram DO. The potential for enhancing the power of genetic association studies in African Americans through the reuse of existing genotype data. Plos Genetics. 6: e1001096. PMID 20824062 DOI: 10.1371/Journal.Pgen.1001096  0.4
2009 Chen GK, Marjoram P, Wall JD. Fast and flexible simulation of DNA sequence data. Genome Research. 19: 136-42. PMID 19029539 DOI: 10.1101/Gr.083634.108  0.4
2007 Chen GK, Zheng T, Witte JS, Goode EL, Gao L, Hu P, Suh YJ, Suktitipat B, Szymczak S, Woo JH, Zhang W. Genome-wide association analyses of expression phenotypes. Genetic Epidemiology. 31: S7-S11. PMID 18046762 DOI: 10.1002/Gepi.20275  0.4
2007 Chen GK, Witte JS. Enriching the analysis of genomewide association studies with hierarchical modeling. American Journal of Human Genetics. 81: 397-404. PMID 17668389 DOI: 10.1086/519794  0.4
2006 Chen GK, Slaten E, Ophoff RA, Lange K. Accommodating chromosome inversions in linkage analysis. American Journal of Human Genetics. 79: 238-51. PMID 16826515 DOI: 10.1086/505540  0.4
2005 Cantor RM, Chen GK, Pajukanta P, Lange K. Association testing in a linked region using large pedigrees. American Journal of Human Genetics. 76: 538-42. PMID 15657872 DOI: 10.1086/428628  0.4
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