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Stephen D. Larson, Ph.D. - Publications

Affiliations: 
Neurosciences University of California, San Diego, La Jolla, CA 
Area:
neuroinformatics, neuroanatomy
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Gleeson P, Cantarelli M, Marin B, Quintana A, Earnshaw M, Sadeh S, Piasini E, Birgiolas J, Cannon RC, Cayco-Gajic NA, Crook S, Davison AP, Dura-Bernal S, Ecker A, Hines ML, ... ... Larson SD, et al. Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits. Neuron. PMID 31201122 DOI: 10.1016/J.Neuron.2019.05.019  0.421
2018 Sarma GP, Lee CW, Portegys T, Ghayoomie V, Jacobs T, Alicea B, Cantarelli M, Currie M, Gerkin RC, Gingell S, Gleeson P, Gordon R, Hasani RM, Idili G, Khayrulin S, ... ... Larson SD, et al. OpenWorm: overview and recent advances in integrative biological simulation of . Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 30201845 DOI: 10.1098/Rstb.2017.0382  0.68
2018 Gleeson P, Lung D, Grosu R, Hasani R, Larson SD. c302: a multiscale framework for modelling the nervous system of . Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 30201842 DOI: 10.1098/Rstb.2017.0379  0.356
2018 Palyanov A, Khayrulin S, Larson SD. Three-dimensional simulation of the body and muscle cells in liquid and gel environments for behavioural analysis. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 30201840 DOI: 10.1098/Rstb.2017.0376  0.32
2018 Larson SD, Gleeson P, Brown AEX. Connectome to behaviour: modelling at cellular resolution. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 30201832 DOI: 10.1098/Rstb.2017.0366  0.354
2016 Sarma GP, Jacobs TW, Watts MD, Ghayoomie SV, Larson SD, Gerkin RC. Unit testing, model validation, and biological simulation. F1000research. 5: 1946. PMID 27635225 DOI: 10.12688/F1000Research.9315.1  0.373
2016 Palyanov A, Khayrulin S, Larson SD. Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue Advances in Engineering Software. 98: 1-11. DOI: 10.1016/J.Advengsoft.2016.03.002  0.315
2015 Gleeson P, Cantarelli M, Currie M, Hokanson J, Idili G, Khayrulin S, Palyanov A, Szigeti B, Larson S. The OpenWorm Project: currently available resources and future plans Bmc Neuroscience. 16. DOI: 10.1186/1471-2202-16-S1-P141  0.428
2014 Szigeti B, Gleeson P, Vella M, Khayrulin S, Palyanov A, Hokanson J, Currie M, Cantarelli M, Idili G, Larson S. OpenWorm: an open-science approach to modeling Caenorhabditis elegans. Frontiers in Computational Neuroscience. 8: 137. PMID 25404913 DOI: 10.3389/Fncom.2014.00137  0.412
2013 Larson SD, Martone ME. NeuroLex.org: an online framework for neuroscience knowledge. Frontiers in Neuroinformatics. 7: 18. PMID 24009581 DOI: 10.3389/Fninf.2013.00018  0.607
2012 Cachat J, Bandrowski A, Grethe JS, Gupta A, Astakhov V, Imam F, Larson SD, Martone ME. A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework. International Review of Neurobiology. 103: 39-68. PMID 23195120 DOI: 10.1016/B978-0-12-388408-4.00003-4  0.584
2012 Imam FT, Larson SD, Bandrowski A, Grethe JS, Gupta A, Martone ME. Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach. Frontiers in Genetics. 3: 111. PMID 22737162 DOI: 10.3389/Fgene.2012.00111  0.634
2012 Boline J, Avants B, Baldock R, Bakker R, Burger A, Gee J, Haselgrove C, Hess A, Ibanez L, Larson S, Majka P, Okamura-Oho Y, Ruffins S, Zaslavsky I. Registration workflows for the creation of INCF digital atlas hubs F1000research. 3. DOI: 10.7490/F1000Research.1092759.1  0.374
2012 Imam FT, Larson S, Bandrowski A, Grethe JS, Gupta A, Martone ME. Maturation of neuroscience information framework: An ontology driven information system for neuroscience Frontiers in Artificial Intelligence and Applications. 239: 15-28. DOI: 10.3233/978-1-61499-084-0-15  0.475
2012 Le Franc Y, Davison AP, Gleeson P, Imam FT, Kriener B, Larson SD, Ray S, Schwabe L, Hill S, De Schutter E. Computational Neuroscience Ontology: a new tool to provide semantic meaning to your models Bmc Neuroscience. 13. DOI: 10.1186/1471-2202-13-S1-P149  0.485
2011 Hawrylycz M, Baldock RA, Burger A, Hashikawa T, Johnson GA, Martone M, Ng L, Lau C, Larson SD, Larsen SD, Nissanov J, Puelles L, Ruffins S, Verbeek F, Zaslavsky I, et al. Digital atlasing and standardization in the mouse brain. Plos Computational Biology. 7: e1001065. PMID 21304938 DOI: 10.1371/Journal.Pcbi.1001065  0.559
2011 Ellisman M, Shu X, Lev-Ram V, Deerinck T, Tsien R, Lamont S, Martinez J, Berlanga M, Bushong E, Martone M, Larson S. Bridging Gaps in Imaging by Applying EM Tomography and Serial Block Face SEM, Including a New Genetically Encoded Tag for Correlated Light and 3D Electron Microscopy of Intact Cells, Tissues and Organisms: Integrating the Resulting Correlated Image Data Using the Whole Brain Catalog Microscopy and Microanalysis. 17: 2-3. DOI: 10.1017/S1431927611000882  0.523
2009 Larson SD, Martone ME. Ontologies for Neuroscience: What are they and What are they Good for? Frontiers in Neuroscience. 3: 60-7. PMID 19753098 DOI: 10.3389/Neuro.01.007.2009  0.608
2009 Larson S, Maynard S, Imam F, Martone M. NeuroLex.org - A semantic wiki for neuroinformatics based on the NIF Standard Ontology Frontiers in Neuroinformatics. 3. DOI: 10.3389/conf.neuro.11.2009.08.078  0.508
2009 Larson SD, Maynard SM, Imam F, Martone ME. NeuroLex.org-A semantic wiki for neuroinformatics based on the NIF standard ontology Ceur Workshop Proceedings. 559. DOI: 10.3389/Conf.Neuro.11.2009.08.078  0.546
2009 Larson S, Aprea C, Maynard S, Imam F, Ellisman M, Martone M. A multi-scale spatial and semantic knowledge framework for neuroanatomy Frontiers in Neuroinformatics. 3. DOI: 10.3389/Conf.Neuro.11.2009.08.015  0.6
2009 Maynard S, Fong L, Larson S, Memon A, Lewis S, Mungall C, Martone M. Using ontologies to define the relation between neurodegenerative disease and associated animal model phenotypes Frontiers in Neuroinformatics. 3. DOI: 10.3389/Conf.Neuro.11.2009.08.009  0.487
2008 Bug WJ, Ascoli GA, Grethe JS, Gupta A, Fennema-Notestine C, Laird AR, Larson SD, Rubin D, Shepherd GM, Turner JA, Martone ME. The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. Neuroinformatics. 6: 175-94. PMID 18975148 DOI: 10.1007/S12021-008-9032-Z  0.618
2008 Martone ME, Tran J, Wong WW, Sargis J, Fong L, Larson S, Lamont SP, Gupta A, Ellisman MH. The cell centered database project: an update on building community resources for managing and sharing 3D imaging data. Journal of Structural Biology. 161: 220-31. PMID 18054501 DOI: 10.1016/J.Jsb.2007.10.003  0.625
2007 Larson SD, Fong LL, Gupta A, Condit C, Bug WJ, Martone ME. A formal ontology of subcellular neuroanatomy. Frontiers in Neuroinformatics. 1: 3. PMID 18974798 DOI: 10.3389/Neuro.11.003.2007  0.616
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