Ephraim L. Tsalik, Ph.D. - Publications

Affiliations: 
Columbia University, New York, NY 

61/119 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ko ER, Reller ME, Tillekeratne LG, Bodinayake CK, Miller C, Burke TW, Henao R, McClain MT, Suchindran S, Nicholson B, Blatt A, Petzold E, Tsalik EL, Nagahawatte A, Devasiri V, et al. Host-response transcriptional biomarkers accurately discriminate bacterial and viral infections of global relevance. Scientific Reports. 13: 22554. PMID 38110534 DOI: 10.1038/s41598-023-49734-6  0.304
2022 Ko ER, Henao R, Frankey K, Petzold EA, Isner PD, Jaehne AK, Allen N, Gardner-Gray J, Hurst G, Pflaum-Carlson J, Jayaprakash N, Rivers EP, Wang H, Ugalde I, Amanullah S, ... ... Tsalik EL, et al. Prospective Validation of a Rapid Host Gene Expression Test to Discriminate Bacterial From Viral Respiratory Infection. Jama Network Open. 5: e227299. PMID 35420659 DOI: 10.1001/jamanetworkopen.2022.7299  0.328
2021 Jaffe IS, Jaehne AK, Quackenbush E, Ko ER, Rivers EP, McClain MT, Ginsburg GS, Woods CW, Tsalik EL. Comparing the Diagnostic Accuracy of Clinician Judgment to a Novel Host Response Diagnostic for Acute Respiratory Illness. Open Forum Infectious Diseases. 8: ofab564. PMID 34888402 DOI: 10.1093/ofid/ofab564  0.333
2021 Tsalik EL, Henao R, Montgomery JL, Nawrocki JW, Aydin M, Lydon EC, Ko ER, Petzold E, Nicholson BP, Cairns CB, Glickman SW, Quackenbush E, Kingsmore SF, Jaehne AK, Rivers EP, et al. Discriminating Bacterial and Viral Infection Using a Rapid Host Gene Expression Test. Critical Care Medicine. PMID 33938716 DOI: 10.1097/CCM.0000000000005085  0.317
2021 McClain MT, Constantine FJ, Henao R, Liu Y, Tsalik EL, Burke TW, Steinbrink JM, Petzold E, Nicholson BP, Rolfe R, Kraft BD, Kelly MS, Saban DR, Yu C, Shen X, et al. Dysregulated transcriptional responses to SARS-CoV-2 in the periphery. Nature Communications. 12: 1079. PMID 33597532 DOI: 10.1038/s41467-021-21289-y  0.305
2020 Tillekeratne LG, Suchindran S, Ko ER, Petzold EA, Bodinayake CK, Nagahawatte A, Devasiri V, Kurukulasooriya R, Nicholson BP, McClain MT, Burke TW, Tsalik EL, Henao R, Ginsburg GS, Reller ME, et al. Previously Derived Host Gene Expression Classifiers Identify Bacterial and Viral Etiologies of Acute Febrile Respiratory Illness in a South Asian Population. Open Forum Infectious Diseases. 7: ofaa194. PMID 32617371 DOI: 10.1093/Ofid/Ofaa194  0.42
2019 Tsalik EL, Khine A, Talebpour A, Samiei A, Parmar V, Burke TW, Mcclain MT, Ginsburg GS, Woods CW, Henao R, Alavie T. Rapid, Sample-to-Answer Host Gene Expression Test to Diagnose Viral Infection. Open Forum Infectious Diseases. 6: ofz466. PMID 34150923 DOI: 10.1093/ofid/ofz466  0.319
2019 Doernberg SB, Komarow L, Tran TTT, Sund Z, Pandori MW, Jensen D, Tsalik EL, Deal CD, Chambers HF, Fowler VG, Evans SR, Patel R, Klausner JD. Simultaneous Evaluation of Diagnostic Assays for Pharyngeal and Rectal Neisseria gonorrhoeae and Chlamydia trachomatis Using a Master Protocol. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31734695 DOI: 10.1093/Cid/Ciz1105  0.319
2019 Ko ER, Philipson CW, Burke TW, Cer RZ, Bishop-Lilly KA, Voegtly LJ, Tsalik EL, Woods CW, Clark DV, Schully KL. Direct-from-blood RNA sequencing identifies the cause of post-bronchoscopy fever. Bmc Infectious Diseases. 19: 905. PMID 31660864 DOI: 10.1186/S12879-019-4462-9  0.341
2019 Lydon EC, Henao R, Burke TW, Aydin M, Nicholson BP, Glickman SW, Fowler VG, Quackenbush EB, Cairns CB, Kingsmore SF, Jaehne AK, Rivers EP, Langley RJ, Petzold E, Ko ER, ... ... Tsalik EL, et al. Validation of a host response test to distinguish bacterial and viral respiratory infection. Ebiomedicine. PMID 31631046 DOI: 10.1016/J.Ebiom.2019.09.040  0.435
2019 Ross MH, Zick BL, Tsalik EL. Host-Based Diagnostics for Acute Respiratory Infections. Clinical Therapeutics. PMID 31353133 DOI: 10.1016/J.Clinthera.2019.06.007  0.414
2019 Liu Y, Tsalik EL, Jiang Y, Ko ER, Woods CW, Henao R, Evans SR. Average Weighted Accuracy (AWA): Pragmatic Analysis for a RADICAL Study. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31157863 DOI: 10.1093/Cid/Ciz437  0.303
2019 Lydon EC, Bullard C, Aydin M, Better OM, Mazur A, Nicholson BP, Ko ER, McClain MT, Ginsburg GS, Woods CW, Burke TW, Henao R, Tsalik EL. A host gene expression approach for identifying triggers of asthma exacerbations. Plos One. 14: e0214871. PMID 30958855 DOI: 10.1371/Journal.Pone.0214871  0.336
2019 Tsalik EL, Khine A, Talebpour A, Samiei A, Parmar V, Burke TW, Mcclain MT, Ginsburg GS, Woods CW, Henao R, Alavie T. Rapid, Sample-to-Answer Host Gene Expression Test to Diagnose Viral Infection Open Forum Infectious Diseases. 6. DOI: 10.1093/Ofid/Ofz466  0.391
2019 Khan K, Betancourt-Quiroz M, Zaas AK, Treece AE, Que LG, Henao R, Suchindran S, McClain MT, Woods CW, Ginsburg GS, Tsalik EL, Tsalik EL. 2595. Murine Models for the Host Response to Typical and Atypical Pneumonia Open Forum Infectious Diseases. 6: S902-S902. DOI: 10.1093/Ofid/Ofz360.2273  0.426
2019 Ross MH, Henao R, Burke TW, McClain MT, Ginsburg GS, Woods CW, Tsalik EL, Tsalik EL. 1330. Evaluation of Multiple Host Response-Based Strategies to Classify Acute Respiratory Illness Open Forum Infectious Diseases. 6: S481-S481. DOI: 10.1093/Ofid/Ofz360.1194  0.371
2019 Steinbrink JM, Hua K, Myers R, Johnson MD, Seidelman J, Tsalik EL, Tsalik EL, Alexander BD, McClain MT. 2885. A Host Transcriptional Signature for Accurate Diagnosis of Candidemia in the Hospital Setting Open Forum Infectious Diseases. 6: S76-S76. DOI: 10.1093/Ofid/Ofz359.163  0.445
2018 Poore GD, Ko ER, Valente A, Henao R, Sumner K, Hong C, Burke TW, Nichols M, McClain MT, Huang ES, Ginsburg GS, Woods CW, Tsalik EL. A miRNA Host Response Signature Accurately Discriminates Acute Respiratory Infection Etiologies. Frontiers in Microbiology. 9: 2957. PMID 30619110 DOI: 10.3389/Fmicb.2018.02957  0.343
2018 Fourati S, Talla A, Mahmoudian M, Burkhart JG, Klén R, Henao R, Yu T, Aydın Z, Yeung KY, Ahsen ME, Almugbel R, Jahandideh S, Liang X, Nordling TEM, Shiga M, ... ... Tsalik EL, et al. A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection. Nature Communications. 9: 4418. PMID 30356117 DOI: 10.1038/S41467-018-06735-8  0.34
2018 Lydon EC, Ko ER, Tsalik EL. The host response as a tool for infectious disease diagnosis and management. Expert Review of Molecular Diagnostics. PMID 29939801 DOI: 10.1080/14737159.2018.1493378  0.382
2018 Dela Cruz CS, Wunderink RG, Christiani DC, Cormier SA, Crothers K, Doerschuk CM, Evans SE, Goldstein DR, Khatri P, Kobzik L, Kolls JK, Levy BD, Metersky ML, Niederman MS, Nusrat R, ... ... Tsalik EL, et al. Future Research Directions in Pneumonia: NHLBI Working Group Report. American Journal of Respiratory and Critical Care Medicine. PMID 29546996 DOI: 10.1164/Rccm.201801-0139Ws  0.364
2018 Sweeney TE, Perumal TM, Henao R, Nichols M, Howrylak JA, Choi AM, Bermejo-Martin JF, Almansa R, Tamayo E, Davenport EE, Burnham KL, Hinds CJ, Knight JC, Woods CW, Kingsmore SF, ... ... Tsalik EL, et al. A community approach to mortality prediction in sepsis via gene expression analysis. Nature Communications. 9: 694. PMID 29449546 DOI: 10.1038/S41467-018-03078-2  0.321
2018 Tsalik EL, Bonomo RA, Fowler VG. New Molecular Diagnostic Approaches to Bacterial Infections and Antibacterial Resistance. Annual Review of Medicine. 69: 379-394. PMID 29414265 DOI: 10.1146/Annurev-Med-052716-030320  0.404
2018 Gayani Tillekeratne L, Suchindran S, Ko E, Petzold E, Bodinayake CK, Nagahawatte A, Devasiri V, Kurukulasooriya R, Reller ME, Nicholson BP, Burke T, Mcclain MT, Tsalik EL, Henao R, Ginsburg GS, et al. 2018. Host Gene Expression Classifiers Distinguish Bacterial and Viral Infections in Sri Lankan Patients with Acute Febrile Respiratory Illness Open Forum Infectious Diseases. 5: S588-S588. DOI: 10.1093/Ofid/Ofy210.1674  0.415
2018 Lydon E, Bullard C, Aydin M, Better O, Mazur A, Mcclain MT, Ginsburg GS, Woods CW, Burke T, Henao R, Tsalik EL. 2015. Host Gene Expression Identifies Infectious Triggers of Asthma Exacerbation Open Forum Infectious Diseases. 5: S587-S587. DOI: 10.1093/Ofid/Ofy210.1671  0.318
2018 Lydon E, Bullard C, Aydin M, Better O, Mazur A, Mcclain MT, Ginsburg GS, Woods CW, Burke T, Henao R, Tsalik EL. 2014. TLDA Validation of a Host Response Signature to Discriminate Bacterial, Viral, and Non-infectious Causes of Illness Open Forum Infectious Diseases. 5: S587-S587. DOI: 10.1093/Ofid/Ofy210.1670  0.361
2018 Tsalik EL, Henao R, Aydin M, Bullard C, Montgomery J, Nawrocki J, Deneris M, Gritzen C, Jones J, Crisp R, Mcclain MT, Burke T, Ginsburg GS, Hemmert A, Woods CW. 2012. FilmArray® Measurement of Host Response Signatures RapidLy Discriminates Viral, Bacterial, and Non-infectious Etiologies of Illness Open Forum Infectious Diseases. 5: S586-S586. DOI: 10.1093/Ofid/Ofy210.1668  0.346
2017 Yan Q, Ahn SH, Medie FM, Sharma-Kuinkel BK, Park LP, Scott WK, Deshmukh H, Tsalik EL, Cyr DD, Woods CW, Yu CA, Adams C, Qi R, Hansen B, Fowler VG. Candidate genes on murine chromosome 8 are associated with susceptibility to Staphylococcus aureus infection in mice and are involved with Staphylococcus aureus septicemia in humans. Plos One. 12: e0179033. PMID 28594911 DOI: 10.1371/Journal.Pone.0179033  0.327
2017 Tsalik EL, Petzold E, Kreiswirth BN, Bonomo RA, Banerjee R, Lautenbach E, Evans SR, Hanson KE, Klausner JD, Patel R. Advancing Diagnostics to Address Antibacterial Resistance: The Diagnostics and Devices Committee of the Antibacterial Resistance Leadership Group. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 64: S41-S47. PMID 28350903 DOI: 10.1093/Cid/Ciw831  0.332
2017 Wang L, Ko ER, Gilchrist JJ, Pittman KJ, Rautanen A, Pirinen M, Thompson JW, Dubois LG, Langley RJ, Jaslow SL, Salinas RE, Rouse DC, Moseley MA, Mwarumba S, Njuguna P, ... ... Tsalik EL, et al. Human genetic and metabolite variation reveals that methylthioadenosine is a prognostic biomarker and an inflammatory regulator in sepsis. Science Advances. 3: e1602096. PMID 28345042 DOI: 10.1126/Sciadv.1602096  0.358
2017 Burke TW, Henao R, Soderblom E, Tsalik EL, Thompson JW, McClain MT, Nichols M, Nicholson BP, Veldman T, Lucas JE, Moseley MA, Turner RB, Lambkin-Williams R, Hero AO, Woods CW, et al. Nasopharyngeal Protein Biomarkers of Acute Respiratory Virus Infection. Ebiomedicine. PMID 28238698 DOI: 10.1016/J.Ebiom.2017.02.015  0.402
2016 Patel R, Tsalik EL, Petzold E, Fowler VG, Klausner JD, Evans S. MASTERMIND - Bringing Microbial Diagnostics to the Clinic. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 27927867 DOI: 10.1093/Cid/Ciw788  0.341
2016 Holcomb ZE, Tsalik EL, Woods CW, McClain MT. Host-based Peripheral Blood Gene Expression Analysis for the Diagnosis of Infectious Diseases. Journal of Clinical Microbiology. PMID 27795332 DOI: 10.1128/Jcm.01057-16  0.407
2016 McClain MT, Nicholson BP, Park LP, Liu TY, Hero AO, Tsalik EL, Zaas AK, Veldman T, Hudson LL, Lambkin-Williams R, Gilbert A, Burke T, Nichols M, Ginsburg GS, Woods CW. A Genomic Signature of Influenza Infection Shows Potential for Presymptomatic Detection, Guiding Early Therapy, and Monitoring Clinical Responses. Open Forum Infectious Diseases. 3: ofw007. PMID 26933666 DOI: 10.1093/Ofid/Ofw007  0.366
2016 Tsalik EL, Henao R, Nichols M, Burke T, Ko ER, McClain MT, Hudson LL, Mazur A, Freeman DH, Veldman T, Langley RJ, Quackenbush EB, Glickman SW, Cairns CB, Jaehne AK, et al. Host gene expression classifiers diagnose acute respiratory illness etiology. Science Translational Medicine. 8: 322ra11. PMID 26791949 DOI: 10.1126/Scitranslmed.Aad6873  0.453
2016 Yang WE, Suchindran S, Nicholson BP, McClain MT, Burke T, Ginsburg GS, Harro CD, Chakraborty S, Sack DA, Woods CW, Tsalik EL. Transcriptomic Analysis of the Host Response and Innate Resilience to Enterotoxigenic Escherichia coli Infection in Humans. The Journal of Infectious Diseases. PMID 26787651 DOI: 10.1093/Infdis/Jiv593  0.389
2016 McClain MT, Woods CW, Tsalik EL, Ginsburg GS, Nicholson BP, Burke T, Hudson L, Veldman T, Better O, Dobos S, Suchindran S, Nichols M, Valente A, Park L, Henao R. Host Transcriptomic Signatures for Early Diagnosis of Acute Respiratory Viral Infection in a University-Based Index-Cluster Cohort Open Forum Infectious Diseases. 3. DOI: 10.1093/Ofid/Ofw194.70  0.358
2015 Tsalik EL, Li Y, Hudson LL, Chu VH, Himmel T, Limkakeng AT, Katz JN, Glickman SW, McClain MT, Welty-Wolf KE, Fowler VG, Ginsburg GS, Woods CW, Reed SD. Potential Cost-effectiveness of Early Identification of Hospital-acquired Infection in Critically Ill Patients. Annals of the American Thoracic Society. PMID 26700878 DOI: 10.1513/Annalsats.201504-205Oc  0.351
2015 McClain MT, Henao R, Williams J, Nicholson B, Veldman T, Hudson L, Tsalik EL, Lambkin-Williams R, Gilbert A, Mann A, Ginsburg GS, Woods CW. Differential evolution of peripheral cytokine levels in symptomatic and asymptomatic responses to experimental influenza virus challenge. Clinical and Experimental Immunology. PMID 26506932 DOI: 10.1111/Cei.12736  0.334
2015 Ruopp M, Chiswell K, Thaden JT, Merchant K, Tsalik EL. Respiratory Tract Infection Clinical Trials from 2007-2012: A Systematic Review of ClinicalTrials.gov. Annals of the American Thoracic Society. PMID 26360527 DOI: 10.1513/Annalsats.201505-291Oc  0.368
2015 Ko ER, Yang WE, McClain MT, Woods CW, Ginsburg GS, Tsalik EL. What was old is new again: using the host response to diagnose infectious disease. Expert Review of Molecular Diagnostics. 1-16. PMID 26145249 DOI: 10.1586/14737159.2015.1059278  0.37
2015 Tsalik EL, McClain M, Zaas AK. Moving toward prime time: host signatures for diagnosis of respiratory infections. The Journal of Infectious Diseases. 212: 173-5. PMID 25637349 DOI: 10.1093/Infdis/Jiv032  0.365
2015 Tsalik EL. Seq and the city Science Translational Medicine. 7. DOI: 10.1126/Scitranslmed.Aaa5547  0.306
2015 Yang WE, Suchindran S, Nicholson BP, McClain MT, Burke T, Ginsburg GS, Harro CD, Chakraborty S, Sack DA, Woods CW, Tsalik EL. Transcriptomic Analysis of the Host Response to Enterotoxigenic E. coli (ETEC) Infection in Humans Open Forum Infectious Diseases. 2. DOI: 10.1093/Ofid/Ofv133.594  0.341
2015 Yan Q, Ahn S, Sharma-Kuinkel BK, Tsalik EL, Cyr DD, Woods CW, Thaden JT, Qi R, Hu M, Ruffin F, Hecker E, Fowler VG. Crif1 Is Associated With Susceptibility to Staphylococcus aureus Infection Through Regulating Host Cell Apoptosis Open Forum Infectious Diseases. 2. DOI: 10.1093/Ofid/Ofv131.67  0.338
2015 Yang WE, Woods CW, Tsalik EL. Host-based diagnostics for detection and prognosis of infectious diseases Methods in Microbiology. DOI: 10.1016/Bs.Mim.2015.06.001  0.378
2014 Tsalik EL, Langley RJ, Dinwiddie DL, Miller NA, Yoo B, van Velkinburgh JC, Smith LD, Thiffault I, Jaehne AK, Valente AM, Henao R, Yuan X, Glickman SW, Rice BJ, McClain MT, et al. An integrated transcriptome and expressed variant analysis of sepsis survival and death. Genome Medicine. 6: 111. PMID 25538794 DOI: 10.1186/S13073-014-0111-5  0.375
2014 Zaas AK, Garner BH, Tsalik EL, Burke T, Woods CW, Ginsburg GS. The current epidemiology and clinical decisions surrounding acute respiratory infections. Trends in Molecular Medicine. 20: 579-88. PMID 25201713 DOI: 10.1016/J.Molmed.2014.08.001  0.363
2014 Langley RJ, Tipper JL, Bruse S, Baron RM, Tsalik EL, Huntley J, Rogers AJ, Jaramillo RJ, O'Donnell D, Mega WM, Keaton M, Kensicki E, Gazourian L, Fredenburgh LE, Massaro AF, et al. Integrative "omic" analysis of experimental bacteremia identifies a metabolic signature that distinguishes human sepsis from systemic inflammatory response syndromes. American Journal of Respiratory and Critical Care Medicine. 190: 445-55. PMID 25054455 DOI: 10.1164/Rccm.201404-0624Oc  0.314
2014 Yan Q, Sharma-Kuinkel BK, Deshmukh H, Tsalik EL, Cyr DD, Lucas J, Woods CW, Scott WK, Sempowski GD, Thaden JT, Thaden J, Rude TH, Ahn SH, Fowler VG. Dusp3 and Psme3 are associated with murine susceptibility to Staphylococcus aureus infection and human sepsis. Plos Pathogens. 10: e1004149. PMID 24901344 DOI: 10.1371/Journal.Ppat.1004149  0.356
2014 Tsalik EL. Sequence-specific antibiotics Science Translational Medicine. 6: 259ec183. DOI: 10.1126/Scitranslmed.Aaa0896  0.345
2014 Tsalik EL. The microbial origins of obesity Science Translational Medicine. 6. DOI: 10.1126/Scitranslmed.3010265  0.311
2014 Tsalik EL. Cardiovascular genetics: All systems point to TREML4 Science Translational Medicine. 6. DOI: 10.1126/Scitranslmed.3009814  0.323
2013 Zaas AK, Burke T, Chen M, McClain M, Nicholson B, Veldman T, Tsalik EL, Fowler V, Rivers EP, Otero R, Kingsmore SF, Voora D, Lucas J, Hero AO, Carin L, et al. A host-based RT-PCR gene expression signature to identify acute respiratory viral infection. Science Translational Medicine. 5: 203ra126. PMID 24048524 DOI: 10.1126/Scitranslmed.3006280  0.423
2013 Ahn SH, Tsalik EL, Cyr DD, Zhang Y, van Velkinburgh JC, Langley RJ, Glickman SW, Cairns CB, Zaas AK, Rivers EP, Otero RM, Veldman T, Kingsmore SF, Lucas J, Woods CW, et al. Gene expression-based classifiers identify Staphylococcus aureus infection in mice and humans. Plos One. 8: e48979. PMID 23326304 DOI: 10.1371/Journal.Pone.0048979  0.393
2010 Glickman SW, Cairns CB, Otero RM, Woods CW, Tsalik EL, Langley RJ, van Velkinburgh JC, Park LP, Glickman LT, Fowler VG, Kingsmore SF, Rivers EP. Disease progression in hemodynamically stable patients presenting to the emergency department with sepsis. Academic Emergency Medicine : Official Journal of the Society For Academic Emergency Medicine. 17: 383-90. PMID 20370777 DOI: 10.1111/J.1553-2712.2010.00664.X  0.331
2010 Tsalik EL, Jones D, Nicholson B, Waring L, Liesenfeld O, Park LP, Glickman SW, Caram LB, Langley RJ, van Velkinburgh JC, Cairns CB, Rivers EP, Otero RM, Kingsmore SF, Lalani T, et al. Multiplex PCR to diagnose bloodstream infections in patients admitted from the emergency department with sepsis. Journal of Clinical Microbiology. 48: 26-33. PMID 19846634 DOI: 10.1128/Jcm.01447-09  0.379
2009 Tsalik EL, Woods CW. Sepsis redefined: the search for surrogate markers. International Journal of Antimicrobial Agents. 34: S16-20. PMID 19931810 DOI: 10.1016/S0924-8579(09)70560-6  0.328
2003 Tsalik EL, Niacaris T, Wenick AS, Pau K, Avery L, Hobert O. LIM homeobox gene-dependent expression of biogenic amine receptors in restricted regions of the C. elegans nervous system. Developmental Biology. 263: 81-102. PMID 14568548 DOI: 10.1016/S0012-1606(03)00447-0  0.656
2003 Tsalik EL, Hobert O. Functional mapping of neurons that control locomotory behavior in Caenorhabditis elegans. Journal of Neurobiology. 56: 178-97. PMID 12838583 DOI: 10.1002/Neu.10245  0.484
2001 Altun-Gultekin Z, Andachi Y, Tsalik EL, Pilgrim D, Kohara Y, Hobert O. A regulatory cascade of three homeobox genes, ceh-10, ttx-3 and ceh-23, controls cell fate specification of a defined interneuron class in C. elegans. Development (Cambridge, England). 128: 1951-69. PMID 11493519  0.485
Low-probability matches (unlikely to be authored by this person)
2010 Tsalik EL, Jaggers LB. Life-threatening asymptomatic incidentaloma: a case report of idiopathic CD4 lymphocytopenia and opportunistic infections. The American Journal of the Medical Sciences. 340: 158-9. PMID 20581653 DOI: 10.1097/Maj.0B013E3181E5F118  0.292
2022 Fiorino C, Liu Y, Henao R, Ko ER, Burke TW, Ginsburg GS, McClain MT, Woods CW, Tsalik EL. Host Gene Expression to Predict Sepsis Progression. Critical Care Medicine. PMID 36178298 DOI: 10.1097/CCM.0000000000005675  0.292
2014 Tsalik EL. Antimicrobial drug resistance in all four corners of the earth Science Translational Medicine. 6. DOI: 10.1126/Scitranslmed.3009591  0.289
2020 McClain MT, Constantine FJ, Nicholson BP, Nichols M, Burke TW, Henao R, Jones DC, Hudson LL, Jaggers LB, Veldman T, Mazur A, Park LP, Suchindran S, Tsalik EL, Ginsburg GS, et al. A blood-based host gene expression assay for early detection of respiratory viral infection: an index-cluster prospective cohort study. The Lancet. Infectious Diseases. PMID 32979932 DOI: 10.1016/S1473-3099(20)30486-2  0.288
2020 Adamson PC, Pandori MW, Doernberg SB, Komarow L, Sund Z, Tran TTT, Jensen D, Tsalik EL, Deal CD, Chambers HF, Fowler VG, Evans SR, Patel R, Klausner JD. Analytical evaluation of the Abbott RealTime CT/NG Assay for detection of Chlamydia trachomatis and Neisseria gonorrhoeae in rectal and pharyngeal swabs. The Journal of Molecular Diagnostics : Jmd. PMID 32247863 DOI: 10.1016/J.Jmoldx.2020.03.004  0.288
2022 Bodkin N, Ross M, McClain MT, Ko ER, Woods CW, Ginsburg GS, Henao R, Tsalik EL. Systematic comparison of published host gene expression signatures for bacterial/viral discrimination. Genome Medicine. 14: 18. PMID 35184750 DOI: 10.1186/s13073-022-01025-x  0.288
2020 McClain MT, Constantine FJ, Henao R, Liu Y, Tsalik EL, Burke TW, Steinbrink JM, Petzold E, Nicholson BP, Rolfe R, Kraft BD, Kelly MS, Sempowski GD, Denny TN, Ginsburg GS, et al. Dysregulated transcriptional responses to SARS-CoV-2 in the periphery support novel diagnostic approaches. Medrxiv : the Preprint Server For Health Sciences. PMID 32743603 DOI: 10.1101/2020.07.20.20155507  0.287
2021 Tsalik EL, Fiorino C, Aqeel A, Liu Y, Henao R, Ko ER, Burke TW, Reller ME, Bodinayake CK, Nagahawatte A, Arachchi WK, Devasiri V, Kurukulasooriya R, McClain MT, Woods CW, et al. The Host Response to Viral Infections Reveals Common and Virus-Specific Signatures in the Peripheral Blood. Frontiers in Immunology. 12: 741837. PMID 34777354 DOI: 10.3389/fimmu.2021.741837  0.286
2016 Limkakeng AT, Monte A, Kabrhel C, Puskarich M, Heitsch L, Tsalik EL, Shapiro NI. Systematic Molecular Phenotyping: A Path Towards Precision Emergency Medicine? Academic Emergency Medicine : Official Journal of the Society For Academic Emergency Medicine. PMID 27288269 DOI: 10.1111/Acem.13027  0.285
2013 Langley RJ, Tsalik EL, van Velkinburgh JC, Glickman SW, Rice BJ, Wang C, Chen B, Carin L, Suarez A, Mohney RP, Freeman DH, Wang M, You J, Wulff J, Thompson JW, et al. An integrated clinico-metabolomic model improves prediction of death in sepsis. Science Translational Medicine. 5: 195ra95. PMID 23884467 DOI: 10.1126/Scitranslmed.3005893  0.282
2014 Tsalik EL. Crowdsourcing disease prognosis Science Translational Medicine. 6. DOI: 10.1126/Scitranslmed.Aaa2069  0.282
2021 Mahle RE, Suchindran S, Henao R, Steinbrink JM, Burke TW, McClain MT, Ginsburg GS, Woods CW, Tsalik EL. Validation of a host gene expression test for bacterial/viral discrimination in immunocompromised hosts. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 33462581 DOI: 10.1093/cid/ciab043  0.278
2021 Steinbrink JM, Myers RA, Hua K, Johnson MD, Seidelman JL, Tsalik EL, Henao R, Ginsburg GS, Woods CW, Alexander BD, McClain MT. The host transcriptional response to Candidemia is dominated by neutrophil activation and heme biosynthesis and supports novel diagnostic approaches. Genome Medicine. 13: 108. PMID 34225776 DOI: 10.1186/s13073-021-00924-9  0.275
2011 Tsalik EL, Cunningham CK, Cunningham HM, Lopez-Marti MG, Sangvai DG, Purdy WK, Anderson DJ, Thompson JR, Brown M, Woods CW, Jaggers LB, Hendershot EF. An Infection Control Program for a 2009 influenza A H1N1 outbreak in a university-based summer camp. Journal of American College Health : J of Ach. 59: 419-26. PMID 21500062 DOI: 10.1080/07448481.2010.534215  0.274
2021 Ross M, Henao R, Burke TW, Ko ER, McClain MT, Ginsburg GS, Woods CW, Tsalik EL. A comparison of host response strategies to distinguish bacterial and viral infection. Plos One. 16: e0261385. PMID 34905580 DOI: 10.1371/journal.pone.0261385  0.273
2012 Tsalik EL, Jaggers LB, Glickman SW, Langley RJ, van Velkinburgh JC, Park LP, Fowler VG, Cairns CB, Kingsmore SF, Woods CW. Discriminative value of inflammatory biomarkers for suspected sepsis. The Journal of Emergency Medicine. 43: 97-106. PMID 22056545 DOI: 10.1016/J.Jemermed.2011.05.072  0.272
2018 Duplessis C, Gregory M, Frey K, Bell M, Truong L, Schully K, Lawler J, Langley RJ, Kingsmore SF, Woods CW, Rivers EP, Jaehne AK, Quackenbush EB, Fowler VG, Tsalik EL, et al. Evaluating the discriminating capacity of cell death (apoptotic) biomarkers in sepsis. Journal of Intensive Care. 6: 72. PMID 30459950 DOI: 10.1186/S40560-018-0341-5  0.271
2023 Strouts FR, McAllister LB, Tsalik EL. Viewing both sides of the coin for infectious disease diagnosis. The Journal of Clinical Investigation. 133. PMID 37066874 DOI: 10.1172/JCI169242  0.259
2023 Zhang Z, Sauerwald N, Cappuccio A, Ramos I, Nair VD, Nudelman G, Zaslavsky E, Ge Y, Gaitas A, Ren H, Brockman J, Geis J, Ramalingam N, King D, McClain MT, ... ... Tsalik EL, et al. Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease. Cell Reports Methods. 3: 100395. PMID 36936082 DOI: 10.1016/j.crmeth.2023.100395  0.258
2014 Tsalik EL. The sum of one's parts? What our microbiomes say about us Science Translational Medicine. 6. DOI: 10.1126/Scitranslmed.3009260  0.258
2013 Goswami ND, Pfeiffer CD, Horton JR, Chiswell K, Tasneem A, Tsalik EL. The state of infectious diseases clinical trials: a systematic review of ClinicalTrials.gov. Plos One. 8: e77086. PMID 24146958 DOI: 10.1371/Journal.Pone.0077086  0.255
2015 Tsalik EL, Willig LK, Rice BJ, van Velkinburgh JC, Mohney RP, McDunn JE, Dinwiddie DL, Miller NA, Mayer ES, Glickman SW, Jaehne AK, Glew RH, Sopori ML, Otero RM, Harrod KS, et al. Renal systems biology of patients with systemic inflammatory response syndrome. Kidney International. PMID 25993322 DOI: 10.1038/Ki.2015.150  0.254
2019 Jaffe IS, Chiswell K, Tsalik EL. A Decade On: Systematic Review of ClinicalTrials.gov Infectious Disease Trials, 2007-2017. Open Forum Infectious Diseases. 6: ofz189. PMID 31276007 DOI: 10.1093/Ofid/Ofz189  0.253
2010 Tsalik EL, Hendershot EF, Sangvai DG, Cunningham HM, Cunningham CK, Lopez-Marti MG, Purdy WK, Woods CW, Caram LB. Clinical presentation and response to treatment of novel influenza A H1N1 in a university-based summer camp population. Journal of Clinical Virology : the Official Publication of the Pan American Society For Clinical Virology. 47: 286-8. PMID 20064740 DOI: 10.1016/J.Jcv.2009.12.012  0.252
2015 Tsalik EL. Beauty is only skin deep Science Translational Medicine. 7. DOI: 10.1126/Scitranslmed.Aab0846  0.244
1998 Tsalik EL, Gartenberg MR. Curing Saccharomyces cerevisiae of the 2 micron plasmid by targeted DNA damage. Yeast (Chichester, England). 14: 847-52. PMID 9818722 DOI: 10.1002/(Sici)1097-0061(19980630)14:9<847::Aid-Yea285>3.0.Co;2-9  0.243
2015 Tsalik EL. Fear as a cardiovascular risk factor Science Translational Medicine. 7. DOI: 10.1126/Scitranslmed.Aaa6252  0.241
2018 Sweeney TE, Azad TD, Donato M, Haynes WA, Perumal TM, Henao R, Bermejo-Martin JF, Almansa R, Tamayo E, Howrylak JA, Choi A, Parnell GP, Tang B, Nichols M, Woods CW, ... ... Tsalik EL, et al. Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters. Critical Care Medicine. PMID 29537985 DOI: 10.1097/Ccm.0000000000003084  0.234
2005 Tsalik EL. DNA-based immunotherapy to treat atopic disease. Annals of Allergy, Asthma & Immunology : Official Publication of the American College of Allergy, Asthma, & Immunology. 95: 403-10; quiz 410-1, . PMID 16312161 DOI: 10.1016/S1081-1206(10)61163-5  0.233
2021 DeMerle KM, Angus DC, Baillie JK, Brant E, Calfee CS, Carcillo J, Chang CH, Dickson R, Evans I, Gordon AC, Kennedy J, Knight JC, Lindsell CJ, Liu V, Marshall JC, ... ... Tsalik EL, et al. Sepsis Subclasses: A Framework for Development and Interpretation. Critical Care Medicine. PMID 33591001 DOI: 10.1097/CCM.0000000000004842  0.229
2013 Xiao B, Wang Y, Li W, Baker M, Guo J, Corbet K, Tsalik EL, Li QJ, Palmer SM, Woods CW, Li Z, Chao NJ, He YW. Plasma microRNA signature as a noninvasive biomarker for acute graft-versus-host disease. Blood. 122: 3365-75. PMID 24041574 DOI: 10.1182/Blood-2013-06-510586  0.229
2014 Goswami ND, Tsalik EL, Naggie S, Miller WC, Horton JR, Pfeiffer CD, Hicks CB. A cross-sectional analysis of HIV and hepatitis C clinical trials 2007 to 2010: the relationship between industry sponsorship and randomized study design. Trials. 15: 31. PMID 24450313 DOI: 10.1186/1745-6215-15-31  0.227
2022 Giroux NS, Ding S, McClain MT, Burke TW, Petzold E, Chung HA, Rivera GO, Wang E, Xi R, Bose S, Rotstein T, Nicholson BP, Chen T, Henao R, Sempowski GD, ... ... Tsalik EL, et al. Differential chromatin accessibility in peripheral blood mononuclear cells underlies COVID-19 disease severity prior to seroconversion. Scientific Reports. 12: 11714. PMID 35810186 DOI: 10.1038/s41598-022-15668-8  0.226
2022 Giroux NS, Ding S, McClain MT, Burke TW, Petzold E, Chung HA, Rivera GO, Wang E, Xi R, Bose S, Rotstein T, Nicholson BP, Chen T, Henao R, Sempowski GD, ... ... Tsalik EL, et al. Differential chromatin accessibility in peripheral blood mononuclear cells underlies COVID-19 disease severity prior to seroconversion. Research Square. PMID 35411343 DOI: 10.21203/rs.3.rs-1479864/v1  0.226
2018 Thaden JT, Chiswell K, Jaffe I, Bergin SP, Yang WE, Romaine A, Roberts J, Nambiar S, Farley J, Benjamin DK, Smith PB, Tsalik EL. Pediatric Antibacterial and Antifungal Trials From 2007 to 2017. Pediatrics. PMID 30158197 DOI: 10.1542/Peds.2017-1849  0.224
2022 Cappuccio A, Chawla DG, Chen X, Rubenstein AB, Cheng WS, Mao W, Burke TW, Tsalik EL, Petzold E, Henao R, McClain MT, Woods CW, Chikina M, Troyanskaya OG, Sealfon SC, et al. Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature. Cell Systems. 13: 989-1001.e8. PMID 36549275 DOI: 10.1016/j.cels.2022.11.008  0.223
2023 McClain MT, Zhbannikov I, Satterwhite LL, Henao R, Giroux NS, Ding S, Burke TW, Tsalik EL, Nix C, Balcazar JP, Petzold EA, Shen X, Woods CW. Epigenetic and transcriptional responses in circulating leukocytes are associated with future decompensation during SARS-CoV-2 infection. Iscience. 27: 108288. PMID 38179063 DOI: 10.1016/j.isci.2023.108288  0.222
2022 Tsalik EL, Rouphael NG, Sadikot RT, Rodriguez-Barradas MC, McClain MT, Wilkins DM, Woods CW, Swamy GK, Walter EB, El Sahly HM, Keitel WA, Mulligan MJ, Tuyishimire B, Serti E, Hamasaki T, et al. Efficacy and safety of azithromycin versus placebo to treat lower respiratory tract infections associated with low procalcitonin: a randomised, placebo-controlled, double-blind, non-inferiority trial. The Lancet. Infectious Diseases. PMID 36525985 DOI: 10.1016/S1473-3099(22)00735-6  0.216
2019 Limkakeng AT, Henao R, Voora D, O'Connell T, Griffin M, Tsalik EL, Shah S, Woods CW, Ginsburg GS. Pilot study of myocardial ischemia-induced metabolomic changes in emergency department patients undergoing stress testing. Plos One. 14: e0211762. PMID 30707740 DOI: 10.1371/Journal.Pone.0211762  0.212
2021 Patel R, Polage CR, Bard JD, May L, Lee FM, Fabre V, Hayden MK, Doernberg SDB, Haake DA, Trautner BW, Grigoryan L, Tsalik EL, Hanson KE. Envisioning Future UTI Diagnostics. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 34463708 DOI: 10.1093/cid/ciab749  0.188
2022 Ko ER, Tsalik EL. A New Era in Host Response Biomarkers to Guide Precision Medicine for Infectious Diseases. Journal of the Pediatric Infectious Diseases Society. PMID 35964237 DOI: 10.1093/jpids/piac081  0.187
2017 Bergin SP, Tsalik EL. Procalcitonin: The right answer but to which question? Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 28407096 DOI: 10.1093/Cid/Cix323  0.185
2020 Giroux NS, Ding S, McClain MT, Burke TW, Petzold E, Chung HA, Palomino GR, Wang E, Xi R, Bose S, Rotstein T, Nicholson BP, Chen T, Henao R, Sempowski GD, ... ... Tsalik EL, et al. Chromatin remodeling in peripheral blood cells reflects COVID-19 symptom severity. Biorxiv : the Preprint Server For Biology. PMID 33300002 DOI: 10.1101/2020.12.04.412155  0.175
2020 Wang L, Balmat TJ, Antonia AL, Constantine FJ, Henao R, Burke TW, Ingham A, McClain MT, Tsalik EL, Ko ER, Ginsburg GS, DeLong MR, Shen X, Woods CW, Hauser ER, et al. An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility. Medrxiv : the Preprint Server For Health Sciences. PMID 33398303 DOI: 10.1101/2020.12.20.20248572  0.175
2022 McKittrick JM, Burke TW, Petzold E, Sempowski GD, Denny TN, Polage CR, Tsalik EL, McClain MT. SARS-CoV-2 reinfection across a spectrum of immunological states. Health Science Reports. 5: e554. PMID 35899182 DOI: 10.1002/hsr2.554  0.174
2021 Chambers HF, Evans SR, Patel R, Cross HR, Harris AD, Doi Y, Boucher HW, van Duin D, Tsalik EL, Holland TL, Pettigrew MM, Tamma PD, Hodges KR, Souli M, Fowler VG. Antibacterial Resistance Leadership Group 2.0 - Back to Business. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 33588438 DOI: 10.1093/cid/ciab141  0.17
2021 Grzesiak E, Bent B, McClain MT, Woods CW, Tsalik EL, Nicholson BP, Veldman T, Burke TW, Gardener Z, Bergstrom E, Turner RB, Chiu C, Doraiswamy PM, Hero A, Henao R, et al. Assessment of the Feasibility of Using Noninvasive Wearable Biometric Monitoring Sensors to Detect Influenza and the Common Cold Before Symptom Onset. Jama Network Open. 4: e2128534. PMID 34586364 DOI: 10.1001/jamanetworkopen.2021.28534  0.169
2023 Bergin SP, Chemaly RF, Dadwal SS, Hill JA, Lee YJ, Haidar G, Luk A, Drelick A, Chin-Hong PV, Benamu E, Khawaja F, Nanayakkara D, Papanicolaou GA, Small CB, Fung M, ... ... Tsalik EL, et al. Plasma Microbial Cell-Free DNA Sequencing in Immunocompromised Patients with Pneumonia: A Prospective Observational Study. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 37815489 DOI: 10.1093/cid/ciad599  0.154
2021 Yu C, Littleton S, Giroux NS, Mathew R, Ding S, Kalnitsky J, Yang Y, Petzold E, Chung HA, Rivera GO, Rotstein T, Xi R, Ko ER, Tsalik EL, Sempowski GD, et al. Mucosal Associated Invariant T (MAIT) Cell Responses Differ by Sex in COVID-19. Med (New York, N.Y.). PMID 33870241 DOI: 10.1016/j.medj.2021.04.008  0.147
2021 Chen L, Kraft BD, Roggli VL, Healy ZR, Woods CW, Tsalik EL, Ginsburg GS, Murdoch DM, Suliman HB, Piantadosi CA, Welty-Wolf KE. Heparin-based blood purification attenuates organ injury in baboons with S. pneumoniae pneumonia. American Journal of Physiology. Lung Cellular and Molecular Physiology. PMID 34105359 DOI: 10.1152/ajplung.00337.2020  0.141
2022 Patel R, Tsalik EL, Evans S, Fowler VG, Doernberg SB. Clinically Adjudicated Reference Standards for Evaluation of Infectious Diseases Diagnostics. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 36262037 DOI: 10.1093/cid/ciac829  0.139
2021 Wang L, Balmat TJ, Antonia AL, Constantine FJ, Henao R, Burke TW, Ingham A, McClain MT, Tsalik EL, Ko ER, Ginsburg GS, DeLong MR, Shen X, Woods CW, Hauser ER, et al. An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility. Genome Medicine. 13: 83. PMID 34001247 DOI: 10.1186/s13073-021-00904-z  0.124
2023 Jayaraman P, Rajagopal M, Paranjpe I, Liharska L, Suarez-Farinas M, Thompson R, Del Valle DM, Beckmann N, Oh W, Gulamali FF, Kauffman J, Gonzalez-Kozlova E, Dellepiane S, Vasquez-Rios G, Vaid A, ... ... Tsalik E, et al. Peripheral Transcriptomics in Acute and Long-Term Kidney Dysfunction in SARS-CoV2 Infection. Medrxiv : the Preprint Server For Health Sciences. PMID 37961671 DOI: 10.1101/2023.10.25.23297469  0.124
2023 Narayanasamy S, Veldman TH, Lee MJ, Glover WA, Tillekeratne LG, Neighbors CE, Harper B, Raghavan V, Kennedy SW, Carper M, Denny T, Tsalik EL, Reller ME, Kibbe WA, Corbie G, et al. RADx-UP Testing Core: Access to COVID-19 Diagnostics in Community-Engaged Research with Underserved Populations. Journal of Clinical Microbiology. e0036723. PMID 37395655 DOI: 10.1128/jcm.00367-23  0.122
2024 Uthappa DM, McClain MT, Nicholson BP, Park LP, Zhbannikov I, Suchindran S, Jimenez M, Constantine FJ, Nichols M, Jones DC, Hudson LL, Jaggers LB, Veldman T, Burke TW, Tsalik EL, et al. Implementation of a Prospective Index-Cluster Sampling Strategy for the Detection of Presymptomatic Viral Respiratory Infection in Undergraduate Students. Open Forum Infectious Diseases. 11: ofae081. PMID 38440301 DOI: 10.1093/ofid/ofae081  0.12
2023 Blair PW, Mehta R, Oppong CK, Tin S, Ko E, Tsalik EL, Chenoweth J, Rozo M, Adams N, Beckett C, Woods CW, Striegel DA, Salvador MG, Brandsma J, McKean L, et al. Screening tools for predicting mortality of adults with suspected sepsis: an international sepsis cohort validation study. Bmj Open. 13: e067840. PMID 36806137 DOI: 10.1136/bmjopen-2022-067840  0.107
2023 Johannesson JM, Glover WA, Petti CA, Veldman TH, Tsalik EL, Taylor DH, Hendren S, Neighbors CE, Tillekeratne LG, Kennedy SW, Harper B, Kibbe WA, Corbie G, Cohen-Wolkowiez M, Woods CW, et al. Access to COVID-19 testing by individuals with housing insecurity during the early days of the COVID-19 pandemic in the United States: a scoping review. Frontiers in Public Health. 11: 1237066. PMID 37841714 DOI: 10.3389/fpubh.2023.1237066  0.104
2023 Giroux NS, Ding S, McClain MT, Burke TW, Petzold E, Chung HA, Rivera GO, Wang E, Xi R, Bose S, Rotstein T, Nicholson BP, Chen T, Henao R, Sempowski GD, ... ... Tsalik EL, et al. Author Correction: Differential chromatin accessibility in peripheral blood mononuclear cells underlies COVID-19 disease severity prior to seroconversion. Scientific Reports. 13: 6462. PMID 37081034 DOI: 10.1038/s41598-023-33323-8  0.101
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