Shawn Hoon, Ph.D. - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Functional Genomics

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Su J, Kitaguchi T, Ohmuro-Matsuyama Y, Seah T, Ghadessy FJ, Hoon S, Ueda H. Transmembrane signaling on a protocell: Creation of receptor-enzyme chimeras for immunodetection of specific antibodies and antigens. Scientific Reports. 9: 18189. PMID 31796769 DOI: 10.1038/S41598-019-54539-7  0.307
2019 Ng NHJ, Jasmen JB, Lim CS, Lau HH, Krishnan VG, Kadiwala J, Kulkarni RN, Ræder H, Vallier L, Hoon S, Teo AKK. HNF4A Haploinsufficiency in MODY1 Abrogates Liver and Pancreas Differentiation from Patient-Derived Induced Pluripotent Stem Cells. Iscience. 16: 192-205. PMID 31195238 DOI: 10.1016/J.Isci.2019.05.032  0.324
2019 Wong JH, Alfatah M, Kong KW, Hoon S, Yeo WL, Ching KC, Jie Hui Goh C, Zhang MM, Lim YH, Wong FT, Arumugam P. Chemogenomic profiling in yeast reveals antifungal mode-of-action of polyene macrolactam auroramycin. Plos One. 14: e0218189. PMID 31181115 DOI: 10.1371/Journal.Pone.0218189  0.337
2019 Yeo WL, Heng E, Tan LL, Lim YW, Lim YH, Hoon S, Zhao H, Zhang MM, Wong FT. Characterization of Cas proteins for CRISPR-Cas editing in streptomycetes. Biotechnology and Bioengineering. PMID 31090220 DOI: 10.1002/Bit.27021  0.362
2019 Alfatah M, Wong JH, Kong KW, Utama F, Hoon S, Arumugam P. Chemical-genetic interaction landscape of mono-(2-ethylhexyl)-phthalate using chemogenomic profiling in yeast. Chemosphere. 228: 219-231. PMID 31029968 DOI: 10.1016/J.Chemosphere.2019.04.100  0.44
2019 Alfatah M, Wong JH, Nge CE, Kong KW, Low KN, Leong CY, Crasta S, Munusamy M, Chang AML, Hoon S, Ng SB, Kanagasundaram Y, Arumugam P. Hypoculoside, a sphingoid base-like compound from Acremonium disrupts the membrane integrity of yeast cells. Scientific Reports. 9: 710. PMID 30679518 DOI: 10.1038/S41598-018-35979-Z  0.303
2019 Loo LSW, Teo A, Ghosh S, Soetedjo AAP, Nguyen L, Krishnan VG, Hoon S. 326-LB: BCL-xL/BCL2L1 Is a Critical Anti-Apoptotic Protein that Suppresses BAK to Promote Pancreatic Specification from Human Pluripotent Stem Cells Diabetes. 68. DOI: 10.2337/Db19-326-Lb  0.308
2019 AMIRRUDDIN NS, TAN YS, VERMA CS, GARDNER D, BEE YM, HOON S, TEO A. 1784-P: Studying the Impact of Heterozygous Human INS Gene Mutation on Pancreatic ß Cell Diabetes. 68: 1784-P. DOI: 10.2337/Db19-1784-P  0.303
2018 Makhija H, Roy S, Hoon S, Ghadessy FJ, Wong D, Jaiswal R, Campana D, Dröge P. A novel λ integrase-mediated seamless vector transgenesis platform for therapeutic protein expression. Nucleic Acids Research. PMID 29893931 DOI: 10.1093/Nar/Gky500  0.42
2018 Zhao H, Lim YH, Wong FT, Yeo WL, Ching KC, Lim YW, Heng E, Chen S, Tsai DJ, Lauderdale TL, Shia KS, Ho YS, Hoon S, Ang EL, Zhang MM. Auroramycin, a potent antibiotic from Streptomyces roseosporus by CRISPR-Cas9 activation. Chembiochem : a European Journal of Chemical Biology. PMID 29799651 DOI: 10.1002/Cbic.201800266  0.346
2017 Yeo CR, Agrawal M, Hoon S, Shabbir A, Shrivastava MK, Huang S, Khoo CM, Chhay V, Yassin MS, Tai ES, Vidal-Puig A, Toh SA. SGBS cells as a model of human adipocyte browning: A comprehensive comparative study with primary human white subcutaneous adipocytes. Scientific Reports. 7: 4031. PMID 28642596 DOI: 10.1038/S41598-017-04369-2  0.315
2015 Kock KH, Kong KW, Hoon S, Seow Y. Functional VEGFA knockdown with artificial 3'-tailed mirtrons defined by 5' splice site and branch point. Nucleic Acids Research. 43: 6568-78. PMID 26089392 DOI: 10.1093/Nar/Gkv617  0.309
2015 Teo AK, Tsuneyoshi N, Hoon S, Tan EK, Stanton LW, Wright CV, Dunn NR. PDX1 binds and represses hepatic genes to ensure robust pancreatic commitment in differentiating human embryonic stem cells. Stem Cell Reports. 4: 578-90. PMID 25843046 DOI: 10.1016/J.Stemcr.2015.02.015  0.338
2014 Guo WM, Kong KW, Brown CJ, Quah ST, Yeo HL, Hoon S, Seow Y. Identification and Characterization of an eIF4e DNA Aptamer That Inhibits Proliferation With High Throughput Sequencing. Molecular Therapy. Nucleic Acids. 3: e217. PMID 25514650 DOI: 10.1038/Mtna.2014.70  0.323
2014 Guerette PA, Hoon S, Ding D, Amini S, Masic A, Ravi V, Venkatesh B, Weaver JC, Miserez A. Nanoconfined β-sheets mechanically reinforce the supra-biomolecular network of robust squid Sucker Ring Teeth. Acs Nano. 8: 7170-9. PMID 24911543 DOI: 10.1021/Nn502149U  0.312
2014 Washburn MC, Kakaradov B, Sundararaman B, Wheeler E, Hoon S, Yeo GW, Hundley HA. The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome. Cell Reports. 6: 599-607. PMID 24508457 DOI: 10.1016/J.Celrep.2014.01.011  0.31
2014 Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, et al. Elephant shark genome provides unique insights into gnathostome evolution. Nature. 505: 174-9. PMID 24402279 DOI: 10.1038/Nature12826  0.399
2014 Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, et al. Corrigendum: Elephant shark genome provides unique insights into gnathostome evolution Nature. 513: 574. DOI: 10.1038/Nature13699  0.38
2013 Lovci MT, Ghanem D, Marr H, Arnold J, Gee S, Parra M, Liang TY, Stark TJ, Gehman LT, Hoon S, Massirer KB, Pratt GA, Black DL, Gray JW, Conboy JG, et al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nature Structural & Molecular Biology. 20: 1434-42. PMID 24213538 DOI: 10.1038/Nsmb.2699  0.301
2013 Guerette PA, Hoon S, Seow Y, Raida M, Masic A, Wong FT, Ho VH, Kong KW, Demirel MC, Pena-Francesch A, Amini S, Tay GZ, Ding D, Miserez A. Accelerating the design of biomimetic materials by integrating RNA-seq with proteomics and materials science. Nature Biotechnology. 31: 908-15. PMID 24013196 DOI: 10.1038/Nbt.2671  0.301
2012 Huelga SC, Vu AQ, Arnold JD, Liang TY, Liu PP, Yan BY, Donohue JP, Shiue L, Hoon S, Brenner S, Ares M, Yeo GW. Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins. Cell Reports. 1: 167-78. PMID 22574288 DOI: 10.1016/J.Celrep.2012.02.001  0.342
2011 Hoon S, Gebbia M, Costanzo M, Davis RW, Giaever G, Nislow C. A global perspective of the genetic basis for carbonyl stress resistance. G3 (Bethesda, Md.). 1: 219-31. PMID 22384333 DOI: 10.1534/G3.111.000505  0.72
2011 Lissina E, Young B, Urbanus ML, Guan XL, Lowenson J, Hoon S, Baryshnikova A, Riezman I, Michaut M, Riezman H, Cowen LE, Wenk MR, Clarke SG, Giaever G, Nislow C. A systems biology approach reveals the role of a novel methyltransferase in response to chemical stress and lipid homeostasis. Plos Genetics. 7: e1002332. PMID 22028670 DOI: 10.1371/Journal.Pgen.1002332  0.722
2010 Ericson E, Hoon S, St Onge RP, Giaever G, Nislow C. Exploring gene function and drug action using chemogenomic dosage assays. Methods in Enzymology. 470: 233-55. PMID 20946813 DOI: 10.1016/S0076-6879(10)70010-0  0.722
2010 Fabrizio P, Hoon S, Shamalnasab M, Galbani A, Wei M, Giaever G, Nislow C, Longo VD. Genome-wide screen in Saccharomyces cerevisiae identifies vacuolar protein sorting, autophagy, biosynthetic, and tRNA methylation genes involved in life span regulation. Plos Genetics. 6: e1001024. PMID 20657825 DOI: 10.1371/Journal.Pgen.1001024  0.706
2009 Kemmer D, McHardy LM, Hoon S, Rebérioux D, Giaever G, Nislow C, Roskelley CD, Roberge M. Combining chemical genomics screens in yeast to reveal spectrum of effects of chemical inhibition of sphingolipid biosynthesis. Bmc Microbiology. 9: 9. PMID 19144191 DOI: 10.1186/1471-2180-9-9  0.717
2008 Hoon S, St Onge RP, Giaever G, Nislow C. Yeast chemical genomics and drug discovery: an update. Trends in Pharmacological Sciences. 29: 499-504. PMID 18755517 DOI: 10.1016/J.Tips.2008.07.006  0.709
2008 Hoon S, Smith AM, Wallace IM, Suresh S, Miranda M, Fung E, Proctor M, Shokat KM, Zhang C, Davis RW, Giaever G, St Onge RP, StOnge RP, Nislow C. An integrated platform of genomic assays reveals small-molecule bioactivities. Nature Chemical Biology. 4: 498-506. PMID 18622389 DOI: 10.1038/Nchembio.100  0.736
2008 Hillenmeyer ME, Fung E, Wildenhain J, Pierce SE, Hoon S, Lee W, Proctor M, St Onge RP, Tyers M, Koller D, Altman RB, Davis RW, Nislow C, Giaever G. The chemical genomic portrait of yeast: uncovering a phenotype for all genes. Science (New York, N.Y.). 320: 362-5. PMID 18420932 DOI: 10.1126/Science.1150021  0.707
2008 Hoon S, Smith AM, Wallace IM, Suresh S, Miranda M, Fung E, Proctor M, Shokat KM, Zhang C, Davis RW, Giaever G, St Onge RP, Nislow C. An integrated platform of genomic assays reveals small-molecule bioactivities (Nature Chemical Biology (2008) 4, (498-506)) Nature Chemical Biology. 4: 632. DOI: 10.1038/Nchembio1008-632  0.682
2004 Yeo G, Hoon S, Venkatesh B, Burge CB. Variation in sequence and organization of splicing regulatory elements in vertebrate genes Proceedings of the National Academy of Sciences of the United States of America. 101: 15700-15705. PMID 15505203 DOI: 10.1073/Pnas.0404901101  0.374
2003 Hoon S, Ratnapu KK, Chia JM, Kumarasamy B, Juguang X, Clamp M, Stabenau A, Potter S, Clarke L, Stupka E. Biopipe: a flexible framework for protocol-based bioinformatics analysis. Genome Research. 13: 1904-15. PMID 12869579 DOI: 10.1101/Gr.1363103  0.305
2002 Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S, Smit A, Gelpke MD, Roach J, Oh T, Ho IY, Wong M, et al. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science (New York, N.Y.). 297: 1301-10. PMID 12142439 DOI: 10.1126/Science.1072104  0.451
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