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Thierry Emonet - Publications

Affiliations: 
MCDB Yale University, New Haven, CT 
 Physics Yale University, New Haven, CT 
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39/72 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Kadakia N, Demir M, Michaelis BT, DeAngelis BD, Reidenbach MA, Clark DA, Emonet T. Odour motion sensing enhances navigation of complex plumes. Nature. 611: 754-761. PMID 36352224 DOI: 10.1038/s41586-022-05423-4  0.589
2020 Demir M, Kadakia N, Anderson HD, Clark DA, Emonet T. Walking navigate complex plumes using stochastic decisions biased by the timing of odor encounters. Elife. 9. PMID 33140723 DOI: 10.7554/eLife.57524  0.569
2019 Gorur-Shandilya S, Martelli C, Demir M, Emonet T. Controlling and measuring dynamic odorant stimuli in the laboratory. The Journal of Experimental Biology. PMID 31672728 DOI: 10.1242/Jeb.207787  0.312
2019 Kadakia N, Emonet T. Front-end Weber-Fechner gain control enhances the fidelity of combinatorial odor coding. Elife. 8. PMID 31251174 DOI: 10.7554/Elife.45293  0.307
2019 Das D, Jülich D, Schwendinger-Schreck J, Guillon E, Lawton AK, Dray N, Emonet T, O'Hern CS, Shattuck MD, Holley SA. Organization of Embryonic Morphogenesis via Mechanical Information. Developmental Cell. PMID 31178400 DOI: 10.1016/J.Devcel.2019.05.014  0.369
2018 Fu X, Kato S, Long J, Mattingly HH, He C, Vural DC, Zucker SW, Emonet T. Spatial self-organization resolves conflicts between individuality and collective migration. Nature Communications. 9: 2177. PMID 29872053 DOI: 10.1038/S41467-018-04539-4  0.313
2018 Waite AJ, Frankel NW, Emonet T. Behavioral Variability and Phenotypic Diversity in Bacterial Chemotaxis. Annual Review of Biophysics. PMID 29618219 DOI: 10.1146/Annurev-Biophys-062215-010954  0.373
2017 Keegstra JM, Kamino K, Anquez F, Lazova MD, Emonet T, Shimizu TS. Phenotypic diversity and temporal variability in a bacterial signaling network revealed by single-cell FRET. Elife. 6. PMID 29231170 DOI: 10.7554/Elife.27455  0.427
2017 Nesper J, Hug I, Kato S, Hee CS, Habazettl JM, Manfredi P, Grzesiek S, Schirmer T, Emonet T, Jenal U. Cyclic di-GMP differentially tunes a bacterial flagellar motor through a novel class of CheY-like regulators. Elife. 6. PMID 29091032 DOI: 10.7554/Elife.28842  0.336
2017 Das D, Chatti V, Emonet T, Holley SA. Patterned Disordered Cell Motion Ensures Vertebral Column Symmetry. Developmental Cell. 42: 170-180.e5. PMID 28743003 DOI: 10.1016/J.Devcel.2017.06.020  0.304
2017 Gorur-Shandilya S, Demir M, Long J, Clark DA, Emonet T. Olfactory receptor neurons use gain control and complementary kinetics to encode intermittent odorant stimuli. Elife. 6. PMID 28653907 DOI: 10.7554/Elife.27670  0.611
2017 Long J, Zucker SW, Emonet T. Feedback between motion and sensation provides nonlinear boost in run-and-tumble navigation. Plos Computational Biology. 13: e1005429. PMID 28264023 DOI: 10.1371/Journal.Pcbi.1005429  0.353
2017 Gorur-Shandilya S, Demir M, Long J, Clark DA, Emonet T. Author response: Olfactory receptor neurons use gain control and complementary kinetics to encode intermittent odorant stimuli Elife. DOI: 10.7554/Elife.27670.025  0.594
2016 Dufour YS, Gillet S, Frankel NW, Weibel DB, Emonet T. Direct Correlation between Motile Behavior and Protein Abundance in Single Cells. Plos Computational Biology. 12: e1005041. PMID 27599206 DOI: 10.1371/Journal.Pcbi.1005041  0.354
2014 Frankel NW, Pontius W, Dufour YS, Long J, Hernandez-Nunez L, Emonet T. Adaptability of non-genetic diversity in bacterial chemotaxis. Elife. 3. PMID 25279698 DOI: 10.7554/Elife.03526  0.749
2014 Dufour YS, Fu X, Hernandez-Nunez L, Emonet T. Limits of feedback control in bacterial chemotaxis. Plos Computational Biology. 10: e1003694. PMID 24967937 DOI: 10.1371/Journal.Pcbi.1003694  0.391
2013 Pontius W, Sneddon MW, Emonet T. Adaptation dynamics in densely clustered chemoreceptors. Plos Computational Biology. 9: e1003230. PMID 24068908 DOI: 10.1371/Journal.Pcbi.1003230  0.71
2013 Dray N, Lawton A, Nandi A, Jülich D, Emonet T, Holley SA. Cell-fibronectin interactions propel vertebrate trunk elongation via tissue mechanics. Current Biology : Cb. 23: 1335-41. PMID 23810535 DOI: 10.1016/J.Cub.2013.05.052  0.301
2013 Mathew D, Martelli C, Kelley-Swift E, Brusalis C, Gershow M, Samuel AD, Emonet T, Carlson JR. Functional diversity among sensory receptors in a Drosophila olfactory circuit. Proceedings of the National Academy of Sciences of the United States of America. 110: E2134-43. PMID 23690583 DOI: 10.1073/Pnas.1306976110  0.301
2013 Martelli C, Carlson JR, Emonet T. Intensity invariant dynamics and odor-specific latencies in olfactory receptor neuron response. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 6285-97. PMID 23575828 DOI: 10.1523/Jneurosci.0426-12.2013  0.316
2013 Lawton AK, Nandi A, Stulberg MJ, Dray N, Sneddon MW, Pontius W, Emonet T, Holley SA. Regulated tissue fluidity steers zebrafish body elongation. Development (Cambridge, England). 140: 573-82. PMID 23293289 DOI: 10.1242/Dev.090381  0.695
2012 Sneddon MW, Emonet T. Modeling cellular signaling: taking space into the computation. Nature Methods. 9: 239-42. PMID 22373909 DOI: 10.1038/Nmeth.1900  0.748
2012 Trofka A, Schwendinger-Schreck J, Brend T, Pontius W, Emonet T, Holley SA. The Her7 node modulates the network topology of the zebrafish segmentation clock via sequestration of the Hes6 hub. Development (Cambridge, England). 139: 940-7. PMID 22278920 DOI: 10.1242/Dev.073544  0.724
2012 Sneddon MW, Pontius W, Emonet T. Stochastic coordination of multiple actuators reduces latency and improves chemotactic response in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 805-10. PMID 22203971 DOI: 10.1073/Pnas.1113706109  0.711
2011 Dufour YS, Sneddon MW, Emonet T. Thermal robustness: lessons from bacterial chemotaxis. Current Biology : Cb. 21: R465-8. PMID 21683899 DOI: 10.1016/J.Cub.2011.05.014  0.742
2011 Chylek LA, Hu B, Blinov ML, Emonet T, Faeder JR, Goldstein B, Gutenkunst RN, Haugh JM, Lipniacki T, Posner RG, Yang J, Hlavacek WS. Guidelines for visualizing and annotating rule-based models. Molecular Biosystems. 7: 2779-95. PMID 21647530 DOI: 10.1039/C1Mb05077J  0.301
2011 Sliusarenko O, Heinritz J, Emonet T, Jacobs-Wagner C. High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics. Molecular Microbiology. 80: 612-27. PMID 21414037 DOI: 10.1111/J.1365-2958.2011.07579.X  0.36
2011 Sneddon MW, Faeder JR, Emonet T. Efficient modeling, simulation and coarse-graining of biological complexity with NFsim. Nature Methods. 8: 177-83. PMID 21186362 DOI: 10.1038/Nmeth.1546  0.751
2011 Park H, Guet CC, Emonet T, Cluzel P. Fine-tuning of chemotactic response in E. coli determined by high-throughput capillary assay. Current Microbiology. 62: 764-9. PMID 20972792 DOI: 10.1007/S00284-010-9778-Z  0.313
2010 Feinerman O, Jentsch G, Tkach KE, Coward JW, Hathorn MM, Sneddon MW, Emonet T, Smith KA, Altan-Bonnet G. Single-cell quantification of IL-2 response by effector and regulatory T cells reveals critical plasticity in immune response. Molecular Systems Biology. 6: 437. PMID 21119631 DOI: 10.1038/Msb.2010.90  0.747
2010 Park H, Pontius W, Guet CC, Marko JF, Emonet T, Cluzel P. Interdependence of behavioural variability and response to small stimuli in bacteria. Nature. 468: 819-23. PMID 21076396 DOI: 10.1038/Nature09551  0.766
2010 Sliusarenko O, Cabeen MT, Wolgemuth CW, Jacobs-Wagner C, Emonet T. Processivity of peptidoglycan synthesis provides a built-in mechanism for the robustness of straight-rod cell morphology. Proceedings of the National Academy of Sciences of the United States of America. 107: 10086-91. PMID 20479277 DOI: 10.1073/Pnas.1000737107  0.332
2009 Alexander RP, Kim PM, Emonet T, Gerstein MB. Understanding modularity in molecular networks requires dynamics. Science Signaling. 2: pe44. PMID 19638611 DOI: 10.1126/Scisignal.281Pe44  0.305
2009 Alyahya SA, Alexander R, Costa T, Henriques AO, Emonet T, Jacobs-Wagner C. RodZ, a component of the bacterial core morphogenic apparatus. Proceedings of the National Academy of Sciences of the United States of America. 106: 1239-44. PMID 19164570 DOI: 10.1073/Pnas.0810794106  0.307
2008 Emonet T, Cluzel P. Relationship between cellular response and behavioral variability in bacterial chemotaxis. Proceedings of the National Academy of Sciences of the United States of America. 105: 3304-9. PMID 18299569 DOI: 10.1073/Pnas.0705463105  0.396
2006 Korobkova EA, Emonet T, Park H, Cluzel P. Hidden stochastic nature of a single bacterial motor. Physical Review Letters. 96: 058105. PMID 16486999 DOI: 10.1103/Physrevlett.96.058105  0.326
2006 Le TT, Emonet T, Harlepp S, Guet CC, Cluzel P. Dynamical determinants of drug-inducible gene expression in a single bacterium. Biophysical Journal. 90: 3315-21. PMID 16461398 DOI: 10.1529/Biophysj.105.073353  0.304
2005 Emonet T, Macal CM, North MJ, Wickersham CE, Cluzel P. AgentCell: a digital single-cell assay for bacterial chemotaxis. Bioinformatics (Oxford, England). 21: 2714-21. PMID 15774553 DOI: 10.1093/Bioinformatics/Bti391  0.339
2004 Korobkova E, Emonet T, Vilar JM, Shimizu TS, Cluzel P. From molecular noise to behavioural variability in a single bacterium. Nature. 428: 574-8. PMID 15058306 DOI: 10.1038/Nature02404  0.408
Low-probability matches (unlikely to be authored by this person)
2017 Nesper J, Hug I, Kato S, Hee C, Habazettl JM, Manfredi P, Grzesiek S, Schirmer T, Emonet T, Jenal U. Author response: Cyclic di-GMP differentially tunes a bacterial flagellar motor through a novel class of CheY-like regulators Elife. DOI: 10.7554/Elife.28842.023  0.294
2019 Schniederberend M, Williams JF, Shine E, Shen C, Jain R, Emonet T, Kazmierczak BI. Modulation of flagellar rotation in surface-attached bacteria: A pathway for rapid surface-sensing after flagellar attachment. Plos Pathogens. 15: e1008149. PMID 31682637 DOI: 10.1371/Journal.Ppat.1008149  0.286
2011 Su CY, Martelli C, Emonet T, Carlson JR. Temporal coding of odor mixtures in an olfactory receptor neuron. Proceedings of the National Academy of Sciences of the United States of America. 108: 5075-80. PMID 21383179 DOI: 10.1073/Pnas.1100369108  0.285
2005 Le TT, Harlepp S, Guet CC, Dittmar K, Emonet T, Pan T, Cluzel P. Real-time RNA profiling within a single bacterium. Proceedings of the National Academy of Sciences of the United States of America. 102: 9160-4. PMID 15967986 DOI: 10.1073/Pnas.0503311102  0.276
2005 Vögler A, Shelyag S, Schüssler M, Cattaneo F, Emonet T, Linde T. Simulations of magneto-convection in the solar photosphere. Equations, methods, and results of the MURaM code Astronomy and Astrophysics. 429: 335-351. DOI: 10.1051/0004-6361:20041507  0.273
2003 Sánchez Almeida J, Emonet T, Cattaneo F. Polarization of photospheric lines from turbulent dynamo simulations Astrophysical Journal. 585: 536-552. DOI: 10.1086/346077  0.268
2010 Montero Llopis P, Jackson AF, Sliusarenko O, Surovtsev I, Heinritz J, Emonet T, Jacobs-Wagner C. Spatial organization of the flow of genetic information in bacteria. Nature. 466: 77-81. PMID 20562858 DOI: 10.1038/Nature09152  0.267
2019 Mattingly H, Emonet T. A rule from bacteria to balance growth and expansion. Nature. 575: 602-603. PMID 31768038 DOI: 10.1038/D41586-019-03348-Z  0.264
2008 Guet CC, Bruneaux L, Min TL, Siegal-Gaskins D, Figueroa I, Emonet T, Cluzel P. Minimally invasive determination of mRNA concentration in single living bacteria. Nucleic Acids Research. 36: e73. PMID 18515347 DOI: 10.1093/Nar/Gkn329  0.26
1998 Emonet T, Moreno-Insertis F. The physics of twisted magnetic tubes rising in a stratified medium: Two-dimensional results Astrophysical Journal. 492: 804-821. DOI: 10.1086/305074  0.252
2001 Emonet T, Moreno-Insertis F, Rast MP. The zigzag path of buoyant magnetic tubes and the generation of vorticity along their periphery Astrophysical Journal. 549: 1212-1220. DOI: 10.1086/319469  0.251
2023 Moore JP, Kamino K, Kottou R, Shimizu T, Emonet T. Sensory diversity and precise adaptation enable independent bet-hedging strategies for multiple signals at the same time. Biorxiv : the Preprint Server For Biology. PMID 36798398 DOI: 10.1101/2023.02.08.527720  0.25
2018 Waite AJ, Frankel NW, Dufour YS, Johnston JF, Long J, Emonet T. Non-genetic diversity modulates population performance. Molecular Systems Biology. 14: e8149. PMID 29321185 DOI: 10.15252/Msb.20178149  0.249
2019 Kadakia N, Emonet T. Author response: Front-end Weber-Fechner gain control enhances the fidelity of combinatorial odor coding Elife. DOI: 10.7554/Elife.45293.021  0.246
2003 Cattaneo F, Emonet T, Weiss N. On the interaction between convection and magnetic fields Astrophysical Journal. 588: 1183-1198. DOI: 10.1086/374313  0.241
2001 Emonet T, Cattaneo F. Small-scale photospheric fields: Observational evidence and numerical simulations Astrophysical Journal. 560: L197-L200. DOI: 10.1086/324315  0.237
1996 Moreno-Insertis F, Emonet T. The rise of twisted magnetic tubes in a stratified medium Astrophysical Journal. 472: L53-L56. DOI: 10.1086/310360  0.232
2023 Jayaram V, Sehdev A, Kadakia N, Brown EA, Emonet T. Temporal novelty detection and multiple timescale integration drive Drosophila orientation dynamics in temporally diverse olfactory environments. Plos Computational Biology. 19: e1010606. PMID 37167321 DOI: 10.1371/journal.pcbi.1010606  0.223
2022 Mattingly HH, Emonet T. Collective behavior and nongenetic inheritance allow bacterial populations to adapt to changing environments. Proceedings of the National Academy of Sciences of the United States of America. 119: e2117377119. PMID 35727978 DOI: 10.1073/pnas.2117377119  0.219
2024 Vo L, Avgidis F, Mattingly HH, Balasubramanian R, Shimizu TS, Kazmierczak BI, Emonet T. Non-genetic adaptation by collective migration. Biorxiv : the Preprint Server For Biology. PMID 38260286 DOI: 10.1101/2024.01.02.573956  0.215
2024 Phan TV, Mattingly HH, Vo L, Marvin JS, Looger LL, Emonet T. Direct measurement of dynamic attractant gradients reveals breakdown of the Patlak-Keller-Segel chemotaxis model. Proceedings of the National Academy of Sciences of the United States of America. 121: e2309251121. PMID 38194458 DOI: 10.1073/pnas.2309251121  0.208
2023 Phan TV, Mattingly HH, Vo L, Marvin JS, Looger LL, Emonet T. Direct measurement of dynamic attractant gradients reveals breakdown of the Patlak-Keller-Segel chemotaxis model. Biorxiv : the Preprint Server For Biology. PMID 37333331 DOI: 10.1101/2023.06.01.543315  0.207
1996 Emonet T, Moreno-Insertis F. Equilibrium of twisted horizontal magnetic flux tubes Astrophysical Journal. 458: 783-801. DOI: 10.1086/176858  0.2
2021 Moore JP, Kamino K, Emonet T. Non-Genetic Diversity in Chemosensing and Chemotactic Behavior. International Journal of Molecular Sciences. 22. PMID 34203411 DOI: 10.3390/ijms22136960  0.192
2016 Waite AJ, Frankel NW, Dufour YS, Johnston JF, Long J, Emonet T. Non-genetic diversity modulates population performance. Molecular Systems Biology. 12: 895. PMID 27994041  0.184
2022 Jayaram V, Kadakia N, Emonet T. Sensing complementary temporal features of odor signals enhances navigation of diverse turbulent plumes. Elife. 11. PMID 35072625 DOI: 10.7554/eLife.72415  0.179
2023 Kamino K, Kadakia N, Avgidis F, Liu ZX, Aoki K, Shimizu TS, Emonet T. Optimal inference of molecular interaction dynamics in FRET microscopy. Proceedings of the National Academy of Sciences of the United States of America. 120: e2211807120. PMID 37014867 DOI: 10.1073/pnas.2211807120  0.167
2016 Raccuglia D, Yan McCurdy L, Demir M, Gorur-Shandilya S, Kunst M, Emonet T, Nitabach MN. Presynaptic GABA Receptors Mediate Temporal Contrast Enhancement in Drosophila Olfactory Sensory Neurons and Modulate Odor-Driven Behavioral Kinetics. Eneuro. 3. PMID 27588305 DOI: 10.1523/ENEURO.0080-16.2016  0.161
2023 Szyszka P, Emonet T, Edwards TL. Extracting spatial information from temporal odor patterns: Insights from insects. Current Opinion in Insect Science. 101082. PMID 37419251 DOI: 10.1016/j.cois.2023.101082  0.127
2022 Brudner S, Emonet T. Where is that smell coming from? Elife. 11. PMID 36125436 DOI: 10.7554/eLife.82635  0.101
2021 Lin CK, Lee DSW, McKeithen-Mead S, Emonet T, Kazmierczak B. A Primed Subpopulation of Bacteria Enables Rapid Expression of the Type 3 Secretion System in Pseudomonas aeruginosa. Mbio. e0083121. PMID 34154400 DOI: 10.1128/mBio.00831-21  0.069
2012 Altan-Bonnet G, Emonet T. Systems immunology: A primer for biophysicists Comprehensive Biophysics. 9: 389-413. DOI: 10.1016/B978-0-12-374920-8.00926-7  0.06
1996 Emonet T, Moreno-Insertis F. MHS-equilibrium of twisted magnetic tubes Astrophysical Letters and Communications. 34: 9-15.  0.033
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