Ari M. Frank, Ph.D. - Publications

Affiliations: 
Computer Science and Engineering University of California, San Diego, La Jolla, CA 
Area:
Bioinformatics, proteomics, mass spectrometry

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2013 Guthals A, Clauser KR, Frank AM, Bandeira N. Sequencing-grade de novo analysis of MS/MS triplets (CID/HCD/ETD) from overlapping peptides. Journal of Proteome Research. 12: 2846-57. PMID 23679345 DOI: 10.1021/Pr400173D  0.48
2011 Frank AM, Monroe ME, Shah AR, Carver JJ, Bandeira N, Moore RJ, Anderson GA, Smith RD, Pevzner PA. Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra. Nature Methods. 8: 587-91. PMID 21572408 DOI: 10.1038/Nmeth.1609  0.48
2009 Frank AM. Predicting intensity ranks of peptide fragment ions. Journal of Proteome Research. 8: 2226-40. PMID 19256476 DOI: 10.1021/Pr800677F  0.48
2009 Frank AM. A ranking-based scoring function for peptide-spectrum matches. Journal of Proteome Research. 8: 2241-52. PMID 19231891 DOI: 10.1021/Pr800678B  0.48
2008 Frank AM, Pesavento JJ, Mizzen CA, Kelleher NL, Pevzner PA. Interpreting top-down mass spectra using spectral alignment. Analytical Chemistry. 80: 2499-505. PMID 18302345 DOI: 10.1021/Ac702324U  0.48
2008 Frank AM, Bandeira N, Shen Z, Tanner S, Briggs SP, Smith RD, Pevzner PA. Clustering millions of tandem mass spectra. Journal of Proteome Research. 7: 113-22. PMID 18067247 DOI: 10.1021/Pr070361E  0.48
2007 Waridel P, Frank A, Thomas H, Surendranath V, Sunyaev S, Pevzner P, Shevchenko A. Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing. Proteomics. 7: 2318-29. PMID 17623296 DOI: 10.1002/Pmic.200700003  0.48
2007 Bandeira N, Tsur D, Frank A, Pevzner PA. Protein identification by spectral networks analysis. Proceedings of the National Academy of Sciences of the United States of America. 104: 6140-5. PMID 17404225 DOI: 10.1073/Pnas.0701130104  0.48
2007 Frank AM, Savitski MM, Nielsen ML, Zubarev RA, Pevzner PA. De novo peptide sequencing and identification with precision mass spectrometry. Journal of Proteome Research. 6: 114-23. PMID 17203955 DOI: 10.1021/Pr060271U  0.48
2006 Wielsch N, Thomas H, Surendranath V, Waridel P, Frank A, Pevzner P, Shevchenko A. Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches. Journal of Proteome Research. 5: 2448-56. PMID 16944958 DOI: 10.1021/Pr060200V  0.48
2006 Bandeira N, Tsur D, Frank A, Pevzner P. A new approach to protein identification Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3909: 363-378. DOI: 10.1007/11732990_31  0.48
2005 Frank A, Tanner S, Bafna V, Pevzner P. Peptide sequence tags for fast database search in mass-spectrometry. Journal of Proteome Research. 4: 1287-95. PMID 16083278 DOI: 10.1021/Pr050011X  0.48
2005 Tanner S, Shu H, Frank A, Wang LC, Zandi E, Mumby M, Pevzner PA, Bafna V. InsPecT: identification of posttranslationally modified peptides from tandem mass spectra. Analytical Chemistry. 77: 4626-39. PMID 16013882 DOI: 10.1021/Ac050102D  0.48
2005 Frank A, Pevzner P. PepNovo: De novo peptide sequencing via probabilistic network modeling Analytical Chemistry. 77: 964-973. PMID 15858974 DOI: 10.1021/Ac048788H  0.48
2005 Frank A, Tanner S, Pevzner P. Peptide sequence tags for fast database search in mass-spectrometry Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3500: 326-341.  0.48
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