Prafulla Aryal, Ph.D. - Publications

Affiliations: 
Biology University of California, San Diego, La Jolla, CA 
Area:
GIRK channels, addiction, plasticity, G proteins

19/61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Wang Q, Corey RA, Hedger G, Aryal P, Grieben M, Nasrallah C, Baronina A, Pike ACW, Shi J, Carpenter EP, Sansom MSP. Lipid Interactions of a Ciliary Membrane TRP Channel: Simulation and Structural Studies of Polycystin-2. Structure (London, England : 1993). PMID 31806353 DOI: 10.1016/j.str.2019.11.005  1
2017 Nematian-Ardestani E, Jarerattanachat V, Aryal P, Sansom MSP, Tucker SJ. The Effects of Stretch Activation on Ionic Selectivity of the TREK-2 K2P K(+) Channel. Channels (Austin, Tex.). 0. PMID 28723241 DOI: 10.1080/19336950.2017.1356955  1
2017 Lacin E, Aryal P, Glaaser IW, Bodhinathan K, Tsai E, Marsh N, Tucker SJ, Sansom MSP, Slesinger PA. Dynamic role of the tether helix in PIP2-dependent gating of a G protein-gated potassium channel. The Journal of General Physiology. PMID 28720589 DOI: 10.1085/jgp.201711801  1
2017 Aryal P, Jarerattanachat V, Clausen MV, Schewe M, McClenaghan C, Argent L, Conrad LJ, Dong YY, Pike AC, Carpenter EP, Baukrowitz T, Sansom MS, Tucker SJ. Bilayer-Mediated Structural Transitions Control Mechanosensitivity of the TREK-2 K2P Channel. Structure (London, England : 1993). PMID 28392258 DOI: 10.1016/j.str.2017.03.006  1
2016 Trick JL, Chelvaniththilan S, Klesse G, Aryal P, Wallace EJ, Tucker SJ, Sansom MS. Functional Annotation of Ion Channel Structures by Molecular Simulation. Structure (London, England : 1993). PMID 27866853 DOI: 10.1016/j.str.2016.10.005  1
2016 McClenaghan C, Schewe M, Aryal P, Carpenter EP, Baukrowitz T, Tucker SJ. Polymodal activation of the TREK-2 K2P channel produces structurally distinct open states. The Journal of General Physiology. 147: 497-505. PMID 27241700 DOI: 10.1085/jgp.201611601  1
2015 Trick JL, Aryal P, Tucker SJ, Sansom MS. Molecular simulation studies of hydrophobic gating in nanopores and ion channels. Biochemical Society Transactions. 43: 146-50. PMID 25849908 DOI: 10.1042/BST20140256  1
2015 Dong YY, Pike AC, Mackenzie A, McClenaghan C, Aryal P, Dong L, Quigley A, Grieben M, Goubin S, Mukhopadhyay S, Ruda GF, Clausen MV, Cao L, Brennan PE, Burgess-Brown NA, et al. K2P channel gating mechanisms revealed by structures of TREK-2 and a complex with Prozac. Science (New York, N.Y.). 347: 1256-9. PMID 25766236 DOI: 10.1126/science.1261512  1
2015 Aryal P, Abd-Wahab F, Bucci G, Sansom MS, Tucker SJ. Influence of lipids on the hydrophobic barrier within the pore of the TWIK-1 K2P channel. Channels (Austin, Tex.). 9: 44-9. PMID 25487004 DOI: 10.4161/19336950.2014.981987  1
2015 Aryal P, Sansom MS, Tucker SJ. Hydrophobic gating in ion channels. Journal of Molecular Biology. 427: 121-30. PMID 25106689 DOI: 10.1016/j.jmb.2014.07.030  1
2014 Aryal P, Abd-Wahab F, Bucci G, Sansom MS, Tucker SJ. A hydrophobic barrier deep within the inner pore of the TWIK-1 K2P potassium channel. Nature Communications. 5: 4377. PMID 25001086 DOI: 10.1038/ncomms5377  1
2012 Almeida MC, Hew-Butler T, Soriano RN, Rao S, Wang W, Wang J, Tamayo N, Oliveira DL, Nucci TB, Aryal P, Garami A, Bautista D, Gavva NR, Romanovsky AA. Pharmacological blockade of the cold receptor TRPM8 attenuates autonomic and behavioral cold defenses and decreases deep body temperature. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 2086-99. PMID 22323721 DOI: 10.1523/JNEUROSCI.5606-11.2012  1
2010 An MC, Lin W, Yang J, Dominguez B, Padgett D, Sugiura Y, Aryal P, Gould TW, Oppenheim RW, Hester ME, Kaspar BK, Ko CP, Lee KF. Acetylcholine negatively regulates development of the neuromuscular junction through distinct cellular mechanisms. Proceedings of the National Academy of Sciences of the United States of America. 107: 10702-7. PMID 20498043 DOI: 10.1073/pnas.1004956107  1
2009 Aryal P, Dvir H, Choe S, Slesinger PA. A discrete alcohol pocket involved in GIRK channel activation. Nature Neuroscience. 12: 988-95. PMID 19561601 DOI: 10.1038/nn.2358  1
2007 Fowler CE, Aryal P, Suen KF, Slesinger PA. Evidence for association of GABA(B) receptors with Kir3 channels and regulators of G protein signalling (RGS4) proteins. The Journal of Physiology. 580: 51-65. PMID 17185339 DOI: 10.1113/jphysiol.2006.123216  1
2005 Lin W, Dominguez B, Yang J, Aryal P, Brandon EP, Gage FH, Lee KF. Neurotransmitter acetylcholine negatively regulates neuromuscular synapse formation by a Cdk5-dependent mechanism. Neuron. 46: 569-79. PMID 15944126 DOI: 10.1016/j.neuron.2005.04.002  1
2005 Martindale JJ, Wall JA, Martinez-Longoria DM, Aryal P, Rockman HA, Guo Y, Bolli R, Glembotski CC. Overexpression of mitogen-activated protein kinase kinase 6 in the heart improves functional recovery from ischemia in vitro and protects against myocardial infarction in vivo. The Journal of Biological Chemistry. 280: 669-76. PMID 15492008 DOI: 10.1074/jbc.M406690200  1
2004 Dance AL, Miller M, Seragaki S, Aryal P, White B, Aschenbrenner L, Hasson T. Regulation of myosin-VI targeting to endocytic compartments. Traffic (Copenhagen, Denmark). 5: 798-813. PMID 15355515 DOI: 10.1111/j.1600-0854.2004.00224.x  1
2003 Lucas DT, Aryal P, Szweda LI, Koch WJ, Leinwand LA. Alterations in mitochondrial function in a mouse model of hypertrophic cardiomyopathy. American Journal of Physiology. Heart and Circulatory Physiology. 284: H575-83. PMID 12414446 DOI: 10.1152/ajpheart.00619.2002  1
Low-probability matches
2016 Koirala P, Li J, Yoon HP, Aryal P, Marsillac S, Rockett AA, Podraza NJ, Collins RW. Through-the-glass spectroscopic ellipsometry for analysis of CdTe thin-film solar cells in the superstrate configuration Progress in Photovoltaics: Research and Applications. DOI: 10.1002/pip.2759  0.01
2015 Aryal P, Molloy JA, Rivard MJ. Erratum: "Independent dosimetric assessment of the model EP917 episcleral brachytherapy plaque" [Med. Phys. 41, 092102 (11pp.) (2014)]. Medical Physics. 42: 3085. PMID 26127060 DOI: 10.1118/1.4919619  0.01
2015 Marasini BP, Baral P, Aryal P, Ghimire KR, Neupane S, Dahal N, Singh A, Ghimire L, Shrestha K. Evaluation of antibacterial activity of some traditionally used medicinal plants against human pathogenic bacteria. Biomed Research International. 2015: 265425. PMID 25738151 DOI: 10.1155/2015/265425  0.01
2015 Aryal P, Huang Z, Marsillac S, Podraza NJ, Collins RW. Quantum efficiency simulations with inputs from spectroscopic ellipsometry for evaluation of carrier collection in a-Si:H solar cells 2015 Ieee 42nd Photovoltaic Specialist Conference, Pvsc 2015. DOI: 10.1109/PVSC.2015.7356311  0.01
2015 Pradhan P, Aryal P, Ibdah AR, Koirala P, Li J, Podraza NJ, Rockett AA, Marsillac S, Collins RW. Effect of molybdenum deposition temperature on the performance of CuIn1-xGaxSe2 Solar Cells 2015 Ieee 42nd Photovoltaic Specialist Conference, Pvsc 2015. DOI: 10.1109/PVSC.2015.7355890  0.01
2015 Huang Z, Dahal LR, Junda MM, Aryal P, Marsillac S, Collins RW, Podraza NJ. Characterization of Structure and Growth Evolution for nc-Si:H in the Tandem Photovoltaic Device Configuration Ieee Journal of Photovoltaics. DOI: 10.1109/JPHOTOV.2015.2478056  0.01
2015 Speer JH, Bräuning A, Zhang QB, Pourtahmasi K, Gaire NP, Dawadi B, Rana P, Dhakal YR, Acharya RH, Adhikari DL, Adhikari S, Aryal PC, Bagale D, Baniya B, Bhandari S, et al. Pinus roxburghii stand dynamics at a heavily impacted site in Nepal: Research through an educational fieldweek Dendrochronologia. DOI: 10.1016/j.dendro.2016.01.005  0.01
2014 Aryal P, Molloy JA, Rivard MJ. Independent dosimetric assessment of the model EP917 episcleral brachytherapy plaque. Medical Physics. 41: 092102. PMID 25186402 DOI: 10.1118/1.4892603  0.01
2014 Aryal P, Kim K, Park PH, Ham S, Cho J, Song K. Baicalein induces autophagic cell death through AMPK/ULK1 activation and downregulation of mTORC1 complex components in human cancer cells. The Febs Journal. 281: 4644-58. PMID 25132405 DOI: 10.1111/febs.12969  0.01
2014 Moraes-Vieira PM, Yore MM, Dwyer PM, Syed I, Aryal P, Kahn BB. RBP4 activates antigen-presenting cells, leading to adipose tissue inflammation and systemic insulin resistance. Cell Metabolism. 19: 512-26. PMID 24606904 DOI: 10.1016/j.cmet.2014.01.018  0.01
2014 Wooten CE, Randall M, Edwards J, Aryal P, Luo W, Feddock J. Implementation and early clinical results utilizing Cs-131 permanent interstitial implants for gynecologic malignancies. Gynecologic Oncology. 133: 268-73. PMID 24556059 DOI: 10.1016/j.ygyno.2014.02.015  0.01
2014 Luo W, Molloy J, Aryal P, Feddock J, Randall M. Determination of prescription dose for Cs-131 permanent implants using the BED formalism including resensitization correction. Medical Physics. 41: 024101. PMID 24506655 DOI: 10.1118/1.4860255  0.01
2014 Aryal P, Molloy JA, Rivard MJ. A modern Monte Carlo investigation of the TG-43 dosimetry parameters for an 125I seed already having AAPM consensus data. Medical Physics. 41: 021702. PMID 24506593 DOI: 10.1118/1.4860135  0.01
2014 Pradhan P, Aryal P, Ibdah AR, Aryal K, Li J, Podraza NJ, Marsillac S, Collins RW. Real time spectroscopic ellipsometry analysis of the three-stages of CuIn1-xGaxSe2 co-evaporation 2014 Ieee 40th Photovoltaic Specialist Conference, Pvsc 2014. 2060-2065. DOI: 10.1109/PVSC.2014.6925332  0.01
2014 Ibdah AR, Aryal P, Pradhan P, Rajan G, Li J, Rockett AA, Marsillac S, Collins RW. Solar cells with thin Cu(In1-xGax)Se2 absorbers: Optical analysis and quantum efficiency simulations 2014 Ieee 40th Photovoltaic Specialist Conference, Pvsc 2014. 373-378. DOI: 10.1109/PVSC.2014.6924935  0.01
2014 Aryal K, Rajan G, Ashrafee T, Ranjan V, Aryal P, Rockett A, Collins RW, Marsillac S. Real time spectroscopic ellipsometry studies of ultrathin CIGS films deposited by 1-stage, 2-stage and 3-stage co-evaporation processes 2014 Ieee 40th Photovoltaic Specialist Conference, Pvsc 2014. 318-322. DOI: 10.1109/PVSC.2014.6924922  0.01
2014 Aryal P, Pradhan P, Attygalle D, Ibdah ARA, Aryal K, Ranjan V, Marsillac S, Podraza NJ, Collins RW. Real-time, in-line, and mapping spectroscopic ellipsometry for applications in Cu(In1-xGax)Se2 metrology Ieee Journal of Photovoltaics. 4: 333-339. DOI: 10.1109/JPHOTOV.2013.2282745  0.01
2014 Koirala P, Attygalle D, Aryal P, Pradhan P, Chen J, Marsillac S, Ferlauto AS, Podraza NJ, Collins RW. Real time spectroscopic ellipsometry for analysis and control of thin film polycrystalline semiconductor deposition in photovoltaics Thin Solid Films. 571: 442-446. DOI: 10.1016/j.tsf.2013.10.158  0.01
2013 Istikharah R, Tun AW, Kaewsutthi S, Aryal P, Kunhapan B, Katanyoo W, Chuenkongkaew W, Lertrit P. Identification of the variants in PARL, the nuclear modifier gene, responsible for the expression of LHON patients in Thailand. Experimental Eye Research. 116: 55-7. PMID 23973714 DOI: 10.1016/j.exer.2013.08.007  0.01
2013 Alapatt P, Guo F, Komanetsky SM, Wang S, Cai J, Sargsyan A, Rodríguez Díaz E, Bacon BT, Aryal P, Graham TE. Liver retinol transporter and receptor for serum retinol-binding protein (RBP4). The Journal of Biological Chemistry. 288: 1250-65. PMID 23105095 DOI: 10.1074/jbc.M112.369132  0.01
2013 Aryal P, Attygalle D, Pradhan P, Ibdah ARA, Aryal K, Podraza NJ, Marsillac S, Rockett AA, Collins RW. Correlations between mapping spectroscopic ellipsometry and solar cell performance for the Study of nonuniformities in thin (0.7 μm) Cu(In 1-xGax)Se2 solar cells over large areas Conference Record of the Ieee Photovoltaic Specialists Conference. 1685-1690. DOI: 10.1109/PVSC.2013.6744469  0.01
2013 Pradhan P, Attygalle D, Aryal P, Podraza NJ, Ferlauto AS, Marsillac S, Collins RW. Real time spectroscopic ellipsometry of first stage CuIn 1-xGaxSe2: Indium-gallium selenide co-evaporation Conference Record of the Ieee Photovoltaic Specialists Conference. 414-419. DOI: 10.1109/PVSC.2013.6744180  0.01
2013 Attygalle D, Ranjan V, Aryal P, Pradhan P, Marsillac S, Podraza NJ, Collins RW. Optical monitoring and control of three-stage coevaporated Cu(In 1-x Gax)Se 2 by real-time spectroscopic ellipsometry Ieee Journal of Photovoltaics. 3: 375-380. DOI: 10.1109/JPHOTOV.2012.2220122  0.01
2013 Aryal P, Attygalle D, Pradhan P, Podraza NJ, Marsillac S, Collins RW. Large-area compositional mapping of Cu(In1-xGa x)Se2 materials and devices with spectroscopic ellipsometry Ieee Journal of Photovoltaics. 3: 359-363. DOI: 10.1109/JPHOTOV.2012.2216513  0.01
2012 Norseen J, Hosooka T, Hammarstedt A, Yore MM, Kant S, Aryal P, Kiernan UA, Phillips DA, Maruyama H, Kraus BJ, Usheva A, Davis RJ, Smith U, Kahn BB. Retinol-binding protein 4 inhibits insulin signaling in adipocytes by inducing proinflammatory cytokines in macrophages through a c-Jun N-terminal kinase- and toll-like receptor 4-dependent and retinol-independent mechanism. Molecular and Cellular Biology. 32: 2010-9. PMID 22431523 DOI: 10.1128/MCB.06193-11  0.01
2012 Nemeth A, Attygalle D, Dahal LR, Aryal P, Huang Z, Salupo C, Petrik P, Juhasz G, Major C, Polgar O, Fried M, Pecz B, Collins RW. Wide-spectral-range, expanded-beam spectroscopic ellipsometer and its application for imaging/mapping of graded nanocrystalline Si:H films Materials Research Society Symposium Proceedings. 1321: 267-272. DOI: 10.1557/opl.2011.1115  0.01
2012 Marsillac S, Ranjan V, Aryal K, Little S, Erkaya Y, Rajan G, Boland P, Attygalle D, Aryal P, Pradhan P, Collins RW. Toward ultra thin CIGS solar cells Conference Record of the Ieee Photovoltaic Specialists Conference. 1492-1494. DOI: 10.1109/PVSC.2012.6317878  0.01
2012 Ranjan V, Aryal K, Little S, Erkaya Y, Rajan G, Boland P, Attygalle D, Aryal P, Pradhan P, Collins RW, Marsillac S. Real time analysis of ultra-thin CIGS thin film deposition Conference Record of the Ieee Photovoltaic Specialists Conference. 452-454. DOI: 10.1109/PVSC.2012.6317655  0.01
2012 Attygalle D, Ranjan V, Aryal P, Pradhan P, Marsillac S, Podraza NJ, Collins RW. Optical monitoring and control of three-stage coevaporated Cu(In 1-xGax)Se2 by real-time spectroscopic ellipsometry Conference Record of the Ieee Photovoltaic Specialists Conference 0.01
2011 Chen J, Aryal P, Li J, Sestak MN, Dahal LR, Huang Z, Collins RW. Through-the-glass spectroscopic ellipsometry of superstrate solar cells and large area panels Conference Record of the Ieee Photovoltaic Specialists Conference. 003486-003491. DOI: 10.1109/PVSC.2011.6186699  0.01
2011 Aryal P, Chen J, Huang Z, Dahal LR, Sestak MN, Attygalle D, Jacobs R, Ranjan V, Marsillac S, Collins RW. Quantum efficiency simulations from on-line compatible mapping of thin-film solar cells Conference Record of the Ieee Photovoltaic Specialists Conference. 002241-002246. DOI: 10.1109/PVSC.2011.6186402  0.01
2010 Attygalle O, Huang Z, Koirala P, Aryal P, Sestak MN, Oahal LR, Mapes MR, Salupo C, Collins RW. Optical metrology of thin film solar cells from 0.2 to 30 μm Conference Record of the Ieee Photovoltaic Specialists Conference. 1684-1688. DOI: 10.1109/PVSC.2010.5616076  0.01
2010 Aryal M, Gyawali P, Rajbhandari N, Aryal P, Pandeya DR. A prevalence of thyroid dysfunction in Kathmandu University Hospital, Nepal Biomedical Research. 21: 411-415.  0.01
2009 Aryal P, Dvir H, Choe S, Slesinger PA. Evidence for a Discrete Alcohol Pocket Mediating GIRK Channel Activation Biophysical Journal. 96: 463a. DOI: 10.1016/j.bpj.2008.12.2387  0.01
2007 Siy H, Aryal P, Winter V, Zand M. Aspectual support for specifying requirements in software product lines Proceedings - International Conference On Software Engineering. DOI: 10.1109/EARLYASPECTS.2007.4  0.01
2005 Wu ZL, Aryal P, Lozach O, Meijer L, Guengerich FP. Biosynthesis of new indigoid inhibitors of protein kinases using recombinant cytochrome P450 2A6. Chemistry & Biodiversity. 2: 51-65. PMID 17191919 DOI: 10.1002/cbdv.200490166  0.01
2004 Guengerich FP, Sorrells JL, Schmitt S, Krauser JA, Aryal P, Meijer L. Generation of new protein kinase inhibitors utilizing cytochrome p450 mutant enzymes for indigoid synthesis. Journal of Medicinal Chemistry. 47: 3236-41. PMID 15163202 DOI: 10.1021/jm030561b  0.01
2002 Guengerich FP, Wheeler JB, Chun YJ, Kim D, Shimada T, Aryal P, Oda Y, Gillam EM. Use of heterologously-expressed cytochrome P450 and glutathione transferase enzymes in toxicity assays. Toxicology. 181: 261-4. PMID 12505322 DOI: 10.1016/S0300-483X(02)00293-7  0.01
2001 Oda Y, Aryal P, Terashita T, Gillam EM, Guengerich FP, Shimada T. Metabolic activation of heterocyclic amines and other procarcinogens in Salmonella typhimurium umu tester strains expressing human cytochrome P4501A1, 1A2, 1B1, 2C9, 2D6, 2E1, and 3A4 and human NADPH-P450 reductase and bacterial O-acetyltransferase. Mutation Research. 492: 81-90. PMID 11377247 DOI: 10.1016/S1383-5718(01)00154-1  0.01
2000 Aryal P, Terashita T, Guengerich FP, Shimada T, Oda Y. Use of genetically engineered Salmonella typhimurium OY1002/1A2 strain coexpressing human cytochrome P450 1A2 and NADPH-cytochrome P450 reductase and bacterial O-acetyltransferase in SOS/umu assay. Environmental and Molecular Mutagenesis. 36: 121-6. PMID 11013410 DOI: 10.1002/1098-2280(2000)36:2<121::AID-EM6>3.0.CO;2-P  0.01
2000 Aryal P, Terashita T, Peter Guengerich F, Shimada T, Oda Y. Cloning and expression of rat CYP2E1 in Saccharomyces cerevisiae: Detection of genotoxicity of N-alkylformamides Environmental and Molecular Mutagenesis. 36: 97-104. PMID 11013407 DOI: 10.1002/1098-2280(2000)36:2<97::AID-EM3>3.0.CO;2-4  0.01
1999 Aryal P, Yoshikawa K, Terashita T, Guengerich FP, Shimada T, Oda Y. Development of a new genotoxicity test system with Salmonella typhimurium OY1001/1A2 expressing human CYP1A2 and NADPH-P450 reductase. Mutation Research. 442: 113-20. PMID 10393280 DOI: 10.1016/S1383-5718(99)00070-4  0.01
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