Michael D. Linderman, Ph.D. - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Signal Processing

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Anchang B, Hart TD, Bendall SC, Qiu P, Bjornson Z, Linderman M, Nolan GP, Plevritis SK. Visualization and cellular hierarchy inference of single-cell data using SPADE. Nature Protocols. 11: 1264-1279. PMID 27310265 DOI: 10.1038/nprot.2016.066  1
2016 Suckiel SA, Linderman MD, Sanderson SC, Diaz GA, Wasserstein M, Kasarskis A, Schadt EE, Zinberg RE. Impact of Genomic Counseling on Informed Decision-Making among ostensibly Healthy Individuals Seeking Personal Genome Sequencing: the HealthSeq Project. Journal of Genetic Counseling. PMID 26898680 DOI: 10.1007/s10897-016-9935-z  1
2015 Okorokova E, Lebedev M, Linderman M, Ossadtchi A. A dynamical model improves reconstruction of handwriting from multichannel electromyographic recordings. Frontiers in Neuroscience. 9: 389. PMID 26578856 DOI: 10.3389/fnins.2015.00389  1
2015 Linderman MD, Bashir A, Diaz GA, Kasarskis A, Sanderson SC, Zinberg RE, Mahajan M, Shah H, Suckiel S, Zweig M, Schadt EE. Preparing the next generation of genomicists: a laboratory-style course in medical genomics. Bmc Medical Genomics. 8: 47. PMID 26264128 DOI: 10.1186/s12920-015-0124-y  1
2015 Sanderson SC, Linderman MD, Suckiel SA, Diaz GA, Zinberg RE, Ferryman K, Wasserstein M, Kasarskis A, Schadt EE. Motivations, concerns and preferences of personal genome sequencing research participants: Baseline findings from the HealthSeq project. European Journal of Human Genetics : Ejhg. PMID 26036856 DOI: 10.1038/ejhg.2015.118  1
2015 Webb BD, Wheeler PG, Hagen JJ, Cohen N, Linderman MD, Diaz GA, Naidich TP, Rodenburg RJ, Houten SM, Schadt EE. Novel, compound heterozygous, single-nucleotide variants in MARS2 associated with developmental delay, poor growth, and sensorineural hearing loss. Human Mutation. 36: 587-92. PMID 25754315 DOI: 10.1002/humu.22781  1
2015 Sanderson SC, Linderman MD, Zinberg R, Bashir A, Kasarskis A, Zweig M, Suckiel S, Shah H, Mahajan M, Diaz GA, Schadt EE. How do students react to analyzing their own genomes in a whole-genome sequencing course?: outcomes of a longitudinal cohort study. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 25634025 DOI: 10.1038/gim.2014.203  1
2015 Nothaft FA, Massie M, Danford T, Zhang Z, Laserson U, Yeksigian C, Kottalam J, Ahuja A, Hammerbacher J, Linderman M, Franklin MJ, Joseph AD, Patterson DA. Rethinking data-intensive science using scalable analytics systems Proceedings of the Acm Sigmod International Conference On Management of Data. 2015: 631-646. DOI: 10.1145/2723372.2742787  1
2014 Bunyavanich S, Schadt EE, Himes BE, Lasky-Su J, Qiu W, Lazarus R, Ziniti JP, Cohain A, Linderman M, Torgerson DG, Eng CS, Pino-Yanes M, Padhukasahasram B, Yang JJ, Mathias RA, et al. Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis. Bmc Medical Genomics. 7: 48. PMID 25085501 DOI: 10.1186/1755-8794-7-48  1
2014 Linderman MD, Brandt T, Edelmann L, Jabado O, Kasai Y, Kornreich R, Mahajan M, Shah H, Kasarskis A, Schadt EE. Analytical validation of whole exome and whole genome sequencing for clinical applications. Bmc Medical Genomics. 7: 20. PMID 24758382 DOI: 10.1186/1755-8794-7-20  1
2014 Webb BD, Brandt T, Liu L, Jalas C, Liao J, Fedick A, Linderman MD, Diaz GA, Kornreich R, Trachtman H, Mehta L, Edelmann L. A founder mutation in COL4A3 causes autosomal recessive Alport syndrome in the Ashkenazi Jewish population. Clinical Genetics. 86: 155-60. PMID 23927549 DOI: 10.1111/cge.12247  1
2013 Sanderson SC, Linderman MD, Kasarskis A, Bashir A, Diaz GA, Mahajan MC, Shah H, Wasserstein M, Zinberg RE, Zweig M, Schadt EE. Informed decision-making among students analyzing their personal genomes on a whole genome sequencing course: a longitudinal cohort study. Genome Medicine. 5: 113. PMID 24373383 DOI: 10.1186/gm518  1
2013 Chen Z, Tang H, Qayyum R, Schick UM, Nalls MA, Handsaker R, Li J, Lu Y, Yanek LR, Keating B, Meng Y, van Rooij FJ, Okada Y, Kubo M, Rasmussen-Torvik L, ... ... Linderman MD, et al. Genome-wide association analysis of red blood cell traits in African Americans: the COGENT Network. Human Molecular Genetics. 22: 2529-38. PMID 23446634 DOI: 10.1093/hmg/ddt087  1
2013 Aghaeepour N, Finak G, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH. Critical assessment of automated flow cytometry data analysis techniques. Nature Methods. 10: 228-38. PMID 23396282 DOI: 10.1038/nmeth.2365  1
2012 Rupasov VI, Lebedev MA, Erlichman JS, Lee SL, Leiter JC, Linderman M. Time-dependent statistical and correlation properties of neural signals during handwriting. Plos One. 7: e43945. PMID 22984455 DOI: 10.1371/journal.pone.0043945  1
2012 Linderman MD, Bjornson Z, Simonds EF, Qiu P, Bruggner RV, Sheode K, Meng TH, Plevritis SK, Nolan GP. CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data. Bioinformatics (Oxford, England). 28: 2400-1. PMID 22782546 DOI: 10.1093/bioinformatics/bts425  1
2012 Rupasov VI, Lebedev MA, Erlichman JS, Linderman M. Neuronal variability during handwriting: lognormal distribution. Plos One. 7: e34759. PMID 22514664 DOI: 10.1371/journal.pone.0034759  1
2011 Qiu P, Simonds EF, Bendall SC, Gibbs KD, Bruggner RV, Linderman MD, Sachs K, Nolan GP, Plevritis SK. Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE. Nature Biotechnology. 29: 886-91. PMID 21964415 DOI: 10.1038/nbt.1991  1
2011 Schadt EE, Linderman MD, Sorenson J, Lee L, Nolan GP. Cloud and heterogeneous computing solutions exist today for the emerging big data problems in biology. Nature Reviews. Genetics. 12: 224. PMID 21301474 DOI: 10.1038/nrg2857-c2  1
2010 Linderman MD, Athalye V, Meng TH, Asadi NB, Bruggner R, Nolan GP. High-throughput Bayesian Network Learning using Heterogeneous Multicore Computers. Ics ... : Proceedings of the ... Acm International Conference On Supercomputing. International Conference On Supercomputing. 2010: 95-104. PMID 28819655 DOI: 10.1145/1810085.1810101  1
2010 Linderman MD, Ho M, Dill DL, Meng TH, Nolan GP. Towards Program Optimization through Automated Analysis of Numerical Precision. Proceedings of the ... Cgo : International Symposium On Code Generation and Optimization. International Symposium On Code Generation and Optimization. 2010: 230-237. PMID 28804690 DOI: 10.1145/1772954.1772987  1
2010 Schadt EE, Linderman MD, Sorenson J, Lee L, Nolan GP. Computational solutions to large-scale data management and analysis. Nature Reviews. Genetics. 11: 647-57. PMID 20717155 DOI: 10.1038/nrg2857  1
2010 Linderman MD, Bruggner R, Athalye V, Meng TH, Bani Asadi N, Nolan GP. High-throughput Bayesian network learning using heterogeneous multicore computers Proceedings of the International Conference On Supercomputing. 95-104. DOI: 10.1145/1810085.1810101  1
2010 Linderman MD, Ho M, Dill DL, Meng TH, Nolan GP. Towards program optimization through automated analysis of numerical precision Proceedings of the 2010 Cgo - the 8th International Symposium On Code Generation and Optimization. 230-237. DOI: 10.1145/1772954.1772987  1
2009 Linderman M, Lebedev MA, Erlichman JS. Recognition of handwriting from electromyography. Plos One. 4: e6791. PMID 19707562 DOI: 10.1371/journal.pone.0006791  1
2008 Linderman MD, Collins JD, Wang H, Meng TH. Merge: A programming model for heterogeneous multi-core systems Operating Systems Review (Acm). 42: 287-296. DOI: 10.1145/1346281.1346318  1
2008 Linderman MD, Santhanam G, Kemere CT, Gilja V, O'Driscoll S, Yu BM, Afshar A, Ryu SI, Shenoy KV, Meng TH. Signal processing challenges for neural prostheses Ieee Signal Processing Magazine. 25: 18-28. DOI: 10.1109/MSP.2008.4408439  1
2007 Santhanam G, Linderman MD, Gilja V, Afshar A, Ryu SI, Meng TH, Shenoy KV. HermesB: a continuous neural recording system for freely behaving primates. Ieee Transactions On Bio-Medical Engineering. 54: 2037-50. PMID 18018699 DOI: 10.1109/TBME.2007.895753  1
2006 Shenoy KV, Santhanam G, Ryu SI, Afshar A, Yu BM, Gilja V, Linderman MD, Kalmar RS, Cunningham JP, Kemere CT, Batista AP, Churchland MM, Meng TH. Increasing the performance of cortically-controlled prostheses. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 6652-6. PMID 17959477 DOI: 10.1109/IEMBS.2006.260912  1
2006 Gilja V, Linderman MD, Santhanam G, Afshar A, Ryu S, Meng TH, Shenoy KV. Multiday electrophysiological recordings from freely behaving primates. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 5643-6. PMID 17947159 DOI: 10.1109/IEMBS.2006.260412  1
2006 Linderman MD, Gilja V, Santhanam G, Afshar A, Ryu S, Meng TH, Shenoy KV. Neural recording stability of chronic electrode arrays in freely behaving primates. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 4387-91. PMID 17946626 DOI: 10.1109/IEMBS.2006.260814  1
2006 Linderman MD, Gilja V, Santhanam G, Afshar A, Ryu S, Meng TH, Shenoy KV. An autonomous, broadband, multi-channel neural recording system for freely behaving primates. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 1212-5. PMID 17946450 DOI: 10.1109/IEMBS.2006.260813  1
2006 Linderman MD, Meng TH. A low power merge cell processor for real-time spike sorting in implantable neural prostheses Proceedings - Ieee International Symposium On Circuits and Systems. 4106-4109.  1
2004 Linderman M, Harris D, Diaz D. Bounding bus delay and noise effects of on-chip inductance Proceedings - 8th Ieee Workshop On Signal Propagation On Interconnects. 167-170.  1
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