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Joshua S. Rest, Ph.D. - Publications

Affiliations: 
1999-2004 University of Michigan, Ann Arbor, Ann Arbor, MI 
 2004-2008 Ecology and Evolution University of Chicago, Chicago, IL 
 2008- Ecology and Evolution Stony Brook University, Stony Brook, NY, United States 
Area:
phylogenetics, phylogenomics, regulatory evolution
Website:
https://life.bio.sunysb.edu/ee/restlab/Home.html
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hamann E, Pauli CS, Joly-Lopez Z, Groen SC, Rest JS, Kane NC, Purugganan MD, Franks SJ. Rapid evolutionary changes in gene expression in response to climate fluctuations. Molecular Ecology. PMID 32761923 DOI: 10.1111/Mec.15583  0.4
2020 Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, ... ... Rest JS, et al. Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods. PMID 32251396 DOI: 10.1038/S41592-020-0796-X  0.363
2019 Collier JL, Rest JS. Swimming, gliding, and rolling toward the mainstream: cell biology of marine protists. Molecular Biology of the Cell. 30: 1245-1248. PMID 31084566 DOI: 10.1091/Mbc.E18-11-0724  0.331
2018 Cai L, Xi Z, Amorim AM, Sugumaran M, Rest JS, Liu L, Davis CC. Widespread ancient whole-genome duplications in Malpighiales coincide with Eocene global climatic upheaval. The New Phytologist. PMID 30030969 DOI: 10.1111/Nph.15357  0.369
2016 Franks SJ, Kane NC, O'Hara NB, Tittes S, Rest JS. Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools. Molecular Ecology. PMID 27072809 DOI: 10.1111/Mec.13615  0.406
2016 Rest JS, Wilkins O, Yuan W, Purugganan MD, Gurevitch J. Meta-analysis and meta-regression of transcriptomic response to water stress in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. PMID 26756945 DOI: 10.1111/Tpj.13124  0.339
2015 O'Hara NB, Rest JS, Franks SJ. Increased Susceptibility to Fungal Disease Accompanies Adaptation to Drought in Brassica Rapa. Evolution; International Journal of Organic Evolution. PMID 26648585 DOI: 10.1111/Evo.12833  0.322
2014 Xi Z, Liu L, Rest JS, Davis CC. Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies. Systematic Biology. 63: 919-32. PMID 25077515 DOI: 10.1093/Sysbio/Syu055  0.396
2014 Martinez C, Rest JS, Kim AR, Ludwig M, Kreitman M, White K, Reinitz J. Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change. Molecular Biology and Evolution. 31: 903-16. PMID 24408913 DOI: 10.1093/Molbev/Msu042  0.348
2013 Xi Z, Rest JS, Davis CC. Phylogenomics and coalescent analyses resolve extant seed plant relationships. Plos One. 8: e80870. PMID 24278335 DOI: 10.1371/Journal.Pone.0080870  0.408
2013 Xi Z, Wang Y, Bradley RK, Sugumaran M, Marx CJ, Rest JS, Davis CC. Massive mitochondrial gene transfer in a parasitic flowering plant clade. Plos Genetics. 9: e1003265. PMID 23459037 DOI: 10.1371/Journal.Pgen.1003265  0.411
2013 Opulente DA, Morales CM, Carey LB, Rest JS. Coevolution trumps pleiotropy: carbon assimilation traits are independent of metabolic network structure in budding yeast. Plos One. 8: e54403. PMID 23326606 DOI: 10.1371/Journal.Pone.0054403  0.631
2013 Rest JS, Morales CM, Waldron JB, Opulente DA, Fisher J, Moon S, Bullaughey K, Carey LB, Dedousis D. Nonlinear fitness consequences of variation in expression level of a eukaryotic gene. Molecular Biology and Evolution. 30: 448-56. PMID 23104081 DOI: 10.1093/Molbev/Mss248  0.645
2012 Xi Z, Bradley RK, Wurdack KJ, Wong K, Sugumaran M, Bomblies K, Rest JS, Davis CC. Horizontal transfer of expressed genes in a parasitic flowering plant. Bmc Genomics. 13: 227. PMID 22681756 DOI: 10.1186/1471-2164-13-227  0.316
2012 Rest JS, Bullaughey K, Morris GP, Li WH. Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast. Plos One. 7: e32274. PMID 22384202 DOI: 10.1371/Journal.Pone.0032274  0.63
2009 Bradley ME, Rest JS, Li WH, Schwartz NB. Sulfate activation enzymes: phylogeny and association with pyrophosphatase. Journal of Molecular Evolution. 68: 1-13. PMID 19067028 DOI: 10.1007/S00239-008-9181-6  0.524
2008 Brown JW, Rest JS, García-Moreno J, Sorenson MD, Mindell DP. Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages. Bmc Biology. 6: 6. PMID 18226223 DOI: 10.1186/1741-7007-6-6  0.64
2006 Qiu YL, Li L, Wang B, Chen Z, Knoop V, Groth-Malonek M, Dombrovska O, Lee J, Kent L, Rest J, Estabrook GF, Hendry TA, Taylor DW, Testa CM, Ambros M, et al. The deepest divergences in land plants inferred from phylogenomic evidence. Proceedings of the National Academy of Sciences of the United States of America. 103: 15511-6. PMID 17030812 DOI: 10.1073/Pnas.0603335103  0.346
2005 Qiu YL, Dombrovska O, Lee J, Li L, Whitlock BA, Bernasconi-Quadroni F, Rest JS, Davis CC, Borsch T, Hilu KW, Renner SS, Soltis DE, Soltis PS, Zanis MJ, Cannone JJ, et al. Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes International Journal of Plant Sciences. 166: 815-842. DOI: 10.1086/431800  0.404
2003 Rest JS, Mindell DP. SARS associated coronavirus has a recombinant polymerase and coronaviruses have a history of host-shifting. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 3: 219-25. PMID 14522185 DOI: 10.1016/J.Meegid.2003.08.001  0.552
2003 Rest JS, Ast JC, Austin CC, Waddell PJ, Tibbetts EA, Hay JM, Mindell DP. Molecular systematics of primary reptilian lineages and the tuatara mitochondrial genome. Molecular Phylogenetics and Evolution. 29: 289-97. PMID 13678684 DOI: 10.1016/S1055-7903(03)00108-8  0.585
2003 Rest JS, Mindell DP. Retroids in archaea: phylogeny and lateral origins. Molecular Biology and Evolution. 20: 1134-42. PMID 12777534 DOI: 10.1093/Molbev/Msg135  0.569
2003 Tucker PK, Adkins RM, Rest JS. Differential rates of evolution for the ZFY-related zinc finger genes, Zfy, Zfx, and Zfa in the mouse genus Mus. Molecular Biology and Evolution. 20: 999-1005. PMID 12716983 DOI: 10.1093/Molbev/Msg112  0.408
2002 Dimmic MW, Rest JS, Mindell DP, Goldstein RA. rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny. Journal of Molecular Evolution. 55: 65-73. PMID 12165843 DOI: 10.1007/S00239-001-2304-Y  0.561
2001 Meshnick SR, Hossler PA, Enger KS, Kazanjian P, Rest JS, Mindell D, Li B, Lee CH, Nimri LF, Carter JL, Beard CB, Huang L. Distribution of DHPS mutations among ITS subtypes of P. carinii f. sp. hominis. The Journal of Eukaryotic Microbiology. 126S-128S. PMID 11906022 DOI: 10.1111/J.1550-7408.2001.Tb00481.X  0.518
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