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Nicole C. Riddle, Ph.D. - Publications

Affiliations: 
1997-2002 Biology Washington University, Saint Louis, St. Louis, MO 
 2002-2005 Biological Sciences University of Missouri - Columbia, Columbia, MO, United States 
 2005-2012 Biology Washington University, Saint Louis, St. Louis, MO 
 2012- Biology University of Alabama, Birmingham, Birmingham, AL, United States 
Area:
Epigenetics/chromatin
Website:
http://www.uab.edu/cas/biology/riddle
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Schoelz JM, Riddle NC. Functions of HP1 proteins in transcriptional regulation. Epigenetics & Chromatin. 15: 14. PMID 35526078 DOI: 10.1186/s13072-022-00453-8  0.731
2021 Schoelz JM, Feng JX, Riddle NC. The Drosophila HP1 family is associated with active gene expression across chromatin contexts. Genetics. 219. PMID 34849911 DOI: 10.1093/genetics/iyab108  0.734
2021 Watanabe LP, Riddle NC. Exercise-induced changes in climbing performance. Royal Society Open Science. 8: 211275. PMID 34804578 DOI: 10.1098/rsos.211275  0.786
2021 Watanabe LP, Riddle NC. GWAS reveal a role for the central nervous system in regulating weight and weight change in response to exercise. Scientific Reports. 11: 5144. PMID 33664357 DOI: 10.1038/s41598-021-84534-w  0.767
2020 Feng JX, Riddle NC. Epigenetics and genome stability. Mammalian Genome : Official Journal of the International Mammalian Genome Society. PMID 32296924 DOI: 10.1007/S00335-020-09836-2  0.343
2020 Watanabe LP, Gordon C, Momeni MY, Riddle NC. Genetic Networks Underlying Natural Variation in Basal and Induced Activity Levels in . G3 (Bethesda, Md.). PMID 32014853 DOI: 10.1534/G3.119.401034  0.794
2019 Riddle NC. Drosophila melanogaster, a new model for exercise research. Acta Physiologica (Oxford, England). e13352. PMID 31344748 DOI: 10.1111/Apha.13352  0.329
2019 Watanabe LP, Riddle NC. New opportunities: Drosophila as a model system for exercise research. Journal of Applied Physiology (Bethesda, Md. : 1985). PMID 31268829 DOI: 10.1152/Japplphysiol.00394.2019  0.78
2018 Riddle NC, Elgin SCR. The Dot Chromosome: Where Genes Flourish Amidst Repeats. Genetics. 210: 757-772. PMID 30401762 DOI: 10.1534/Genetics.118.301146  0.363
2018 Mills BB, Thomas AD, Riddle NC. HP1B is a euchromatic Drosophila HP1 homolog with links to metabolism. Plos One. 13: e0205867. PMID 30346969 DOI: 10.1371/Journal.Pone.0205867  0.403
2018 Watanabe LP, Riddle NC. Measuring Exercise Levels in Drosophila melanogaster Using the Rotating Exercise Quantification System (REQS). Journal of Visualized Experiments : Jove. PMID 29889199 DOI: 10.3791/57751  0.78
2017 Watanabe LP, Riddle NC. Characterization of the Rotating Exercise Quantification System (REQS), a novel Drosophila exercise quantification apparatus. Plos One. 12: e0185090. PMID 29016615 DOI: 10.1371/Journal.Pone.0185090  0.783
2016 Mendez S, Watanabe L, Hill R, Owens M, Moraczewski J, Rowe GC, Riddle NC, Reed LK. The TreadWheel: A Novel Apparatus to Measure Genetic Variation in Response to Gently Induced Exercise for Drosophila. Plos One. 11: e0164706. PMID 27736996 DOI: 10.1371/Journal.Pone.0164706  0.789
2015 Huisinga KL, Riddle NC, Leung W, Shimonovich S, McDaniel S, Figueroa-Clarevega A, Elgin SC. Targeting of P Element Reporters to Heterochromatic Domains by Transposable Element 1360 in Drosophila melanogaster. Genetics. PMID 26680659 DOI: 10.1534/Genetics.115.183228  0.586
2015 Leung W, Shaffer CD, Reed LK, Smith ST, Barshop W, Dirkes W, Dothager M, Lee P, Wong J, Xiong D, Yuan H, Bedard JE, Machone JF, Patterson SD, Price AL, ... ... Riddle NC, et al. Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution. G3 (Bethesda, Md.). 5: 719-40. PMID 25740935 DOI: 10.1534/G3.114.015966  0.559
2015 Watanabe LP, Riddle NC. Interindividual Variability of DNA Methylation Personalized Epigenetics. 17-53. DOI: 10.1016/B978-0-12-420135-4.00002-4  0.727
2014 Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, et al. Comparative analysis of metazoan chromatin organization. Nature. 512: 449-52. PMID 25164756 DOI: 10.1038/Nature13415  0.619
2012 Riddle NC, Jung YL, Gu T, Alekseyenko AA, Asker D, Gui H, Kharchenko PV, Minoda A, Plachetka A, Schwartz YB, Tolstorukov MY, Kuroda MI, Pirrotta V, Karpen GH, Park PJ, et al. Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain. Plos Genetics. 8: e1002954. PMID 23028361 DOI: 10.1371/Journal.Pgen.1002954  0.642
2012 Schwartz YB, Linder-Basso D, Kharchenko PV, Tolstorukov MY, Kim M, Li HB, Gorchakov AA, Minoda A, Shanower G, Alekseyenko AA, Riddle NC, Jung YL, Gu T, Plachetka A, Elgin SC, et al. Nature and function of insulator protein binding sites in the Drosophila genome. Genome Research. 22: 2188-98. PMID 22767387 DOI: 10.1101/Gr.138156.112  0.621
2012 Alekseyenko AA, Ho JW, Peng S, Gelbart M, Tolstorukov MY, Plachetka A, Kharchenko PV, Jung YL, Gorchakov AA, Larschan E, Gu T, Minoda A, Riddle NC, Schwartz YB, Elgin SC, et al. Sequence-specific targeting of dosage compensation in Drosophila favors an active chromatin context. Plos Genetics. 8: e1002646. PMID 22570616 DOI: 10.1371/Journal.Pgen.1002646  0.608
2011 Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, et al. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 471: 480-5. PMID 21179089 DOI: 10.1038/Nature09725  0.645
2011 Riddle NC, Minoda A, Kharchenko PV, Alekseyenko AA, Schwartz YB, Tolstorukov MY, Gorchakov AA, Jaffe JD, Kennedy C, Linder-Basso D, Peach SE, Shanower G, Zheng H, Kuroda MI, Pirrotta V, et al. Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin. Genome Research. 21: 147-63. PMID 21177972 DOI: 10.1101/Gr.110098.110  0.642
2011 Egelhofer TA, Minoda A, Klugman S, Lee K, Kolasinska-Zwierz P, Alekseyenko AA, Cheung MS, Day DS, Gadel S, Gorchakov AA, Gu T, Kharchenko PV, Kuan S, Latorre I, Linder-Basso D, ... ... Riddle NC, et al. An assessment of histone-modification antibody quality. Nature Structural & Molecular Biology. 18: 91-3. PMID 21131980 DOI: 10.1038/Nsmb.1972  0.53
2010 Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... Riddle NC, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/Science.1198374  0.634
2010 Riddle NC, Jiang H, An L, Doerge RW, Birchler JA. Gene expression analysis at the intersection of ploidy and hybridity in maize. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 341-53. PMID 19657617 DOI: 10.1007/S00122-009-1113-3  0.549
2009 Riddle NC, Shaffer CD, Elgin SC. A lot about a little dot - lessons learned from Drosophila melanogaster chromosome 4. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 87: 229-41. PMID 19234537 DOI: 10.1139/O08-119  0.533
2009 Brower-Toland B, Riddle NC, Jiang H, Huisinga KL, Elgin SC. Multiple SET methyltransferases are required to maintain normal heterochromatin domains in the genome of Drosophila melanogaster. Genetics. 181: 1303-19. PMID 19189944 DOI: 10.1534/Genetics.108.100271  0.777
2008 Riddle NC, Elgin SC. A role for RNAi in heterochromatin formation in Drosophila. Current Topics in Microbiology and Immunology. 320: 185-209. PMID 18268845 DOI: 10.1007/978-3-540-75157-1_9  0.605
2008 Riddle NC, Leung W, Haynes KA, Granok H, Wuller J, Elgin SC. An investigation of heterochromatin domains on the fourth chromosome of Drosophila melanogaster. Genetics. 178: 1177-91. PMID 18245350 DOI: 10.1534/Genetics.107.081828  0.728
2008 Riddle NC, Birchler JA. Comparative analysis of inbred and hybrid maize at the diploid and tetraploid levels. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 116: 563-76. PMID 18080809 DOI: 10.1007/S00122-007-0691-1  0.506
2007 Lamb JC, Riddle NC, Cheng YM, Theuri J, Birchler JA. Localization and transcription of a retrotransposon-derived element on the maize B chromosome. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 15: 383-98. PMID 17429746 DOI: 10.1007/S10577-007-1135-0  0.526
2006 Riddle NC, Kato A, Birchler JA. Genetic variation for the response to ploidy change in Zea mays L. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 114: 101-11. PMID 17053922 DOI: 10.1007/S00122-006-0414-Z  0.517
2006 Riddle NC, Elgin SC. The dot chromosome of Drosophila: insights into chromatin states and their change over evolutionary time. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 14: 405-16. PMID 16821136 DOI: 10.1007/S10577-006-1061-6  0.602
2005 Birchler JA, Riddle NC, Auger DL, Veitia RA. Dosage balance in gene regulation: biological implications. Trends in Genetics : Tig. 21: 219-26. PMID 15797617 DOI: 10.1016/J.Tig.2005.02.010  0.583
2005 Riddle NC, Richards EJ. Genetic variation in epigenetic inheritance of ribosomal RNA gene methylation in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 41: 524-32. PMID 15686517 DOI: 10.1111/J.1365-313X.2004.02317.X  0.328
2003 Riddle NC, Birchler JA. Effects of reunited diverged regulatory hierarchies in allopolyploids and species hybrids. Trends in Genetics : Tig. 19: 597-600. PMID 14585608 DOI: 10.1016/J.Tig.2003.09.005  0.58
2003 Birchler JA, Auger DL, Riddle NC. In search of the molecular basis of heterosis. The Plant Cell. 15: 2236-9. PMID 14523245 DOI: 10.1105/Tpc.151030  0.477
2003 Riddle NC, Birchler JA. Book Review:The Role of Chromosomal Change in Plant Evolution Bioessays. 25: 918-919. DOI: 10.1002/Bies.10334  0.501
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