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Allison J. Miller, Ph.D. - Publications

Affiliations: 
Washington University, Saint Louis, St. Louis, MO 
 St. Louis University, St. Louis, MO, United States 
Area:
Plant Evolutionary Genetics
Website:
http://millerlabatslu.weebly.com/
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53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Swift JF, Migicovsky Z, Trello GE, Miller AJ. Grapevine bacterial communities display compartment-specific dynamics over space and time within the Central Valley of California. Environmental Microbiome. 18: 84. PMID 37996903 DOI: 10.1186/s40793-023-00539-0  0.622
2023 Williams BR, Miller AJ, Edwards CE. How do threatened plant species with low genetic diversity respond to environmental stress? Insights from comparative conservation epigenomics and phenotypic plasticity. Molecular Ecology Resources. PMID 37988186 DOI: 10.1111/1755-0998.13897  0.612
2023 Patel S, Harris ZN, Londo JP, Miller A, Fennell A. Genome assembly of the hybrid grapevine 'Chambourcin'. Gigabyte (Hong Kong, China). 2023: gigabyte84. PMID 37408731 DOI: 10.46471/gigabyte.84  0.759
2023 Karabulut E, Erkoç K, Acı M, Aydın M, Barriball S, Braley J, Cassetta E, Craine EB, Diaz-Garcia L, Hershberger J, Meyering B, Miller AJ, Rubin MJ, Tesdell O, Schlautman B, et al. Sainfoin ( spp.) crop ontology: supporting germplasm characterization and international research collaborations. Frontiers in Plant Science. 14: 1177406. PMID 37255566 DOI: 10.3389/fpls.2023.1177406  0.758
2023 Harris ZN, Pratt JE, Kovacs LG, Klein LL, Kwasniewski MT, Londo JP, Wu AS, Miller AJ. Grapevine scion gene expression is driven by rootstock and environment interaction. Bmc Plant Biology. 23: 211. PMID 37085756 DOI: 10.1186/s12870-023-04223-w  0.794
2022 Harris ZN, Pratt JE, Bhakta N, Frawley E, Klein LL, Kwasniewski MT, Migicovsky Z, Miller AJ. Temporal and environmental factors interact with rootstock genotype to shape leaf elemental composition in grafted grapevines. Plant Direct. 6: e440. PMID 35999957 DOI: 10.1002/pld3.440  0.779
2022 Migicovsky Z, Swift JF, Helget Z, Klein LL, Ly A, Maimaitiyiming M, Woodhouse K, Fennell A, Kwasniewski M, Miller AJ, Cousins P, Chitwood DH. Increases in vein length compensate for leaf area lost to lobing in grapevine. American Journal of Botany. 109: 1063-1073. PMID 35851467 DOI: 10.1002/ajb2.16033  0.746
2022 Linan AG, Lowry Ii PP, Miller AJ, Schatz GE, Sevathian JC, Edwards CE. Interspecific hybridization and island colonization history, not rarity, most strongly affect the genetic diversity in a clade of Mascarene-endemic trees. The Journal of Heredity. PMID 35192705 DOI: 10.1093/jhered/esac010  0.354
2021 Harris ZN, Awale M, Bhakta N, Chitwood DH, Fennell A, Frawley E, Klein LL, Kovacs LG, Kwasniewski M, Londo JP, Ma Q, Migicovsky Z, Swift JF, Miller AJ. Multi-dimensional leaf phenotypes reflect root system genotype in grafted grapevine over the growing season. Gigascience. 10. PMID 34966928 DOI: 10.1093/gigascience/giab087  0.766
2021 Van Tassel DL, DeHaan LR, Diaz-Garcia L, Hershberger J, Rubin MJ, Schlautman B, Turner K, Miller AJ. Re-imagining crop domestication in the era of high throughput phenomics. Current Opinion in Plant Biology. 65: 102150. PMID 34883308 DOI: 10.1016/j.pbi.2021.102150  0.748
2021 Herron SA, Rubin MJ, Albrecht MA, Long QG, Sandoval MC, Miller AJ. The role of genus and life span in predicting seed and vegetative trait variation and correlation in Lathyrus, Phaseolus, and Vicia. American Journal of Botany. PMID 34634144 DOI: 10.1002/ajb2.1773  0.808
2021 Khoury CK, Brush S, Costich DE, Curry HA, de Haan S, Engels JMM, Guarino L, Hoban S, Mercer KL, Miller AJ, Nabhan GP, Perales HR, Richards C, Riggins C, Thormann I. Crop genetic erosion: understanding and responding to loss of crop diversity. The New Phytologist. PMID 34515358 DOI: 10.1111/nph.17733  0.336
2021 Swift JF, Hall ME, Harris ZN, Kwasniewski MT, Miller AJ. Grapevine Microbiota Reflect Diversity among Compartments and Complex Interactions within and among Root and Shoot Systems. Microorganisms. 9. PMID 33401756 DOI: 10.3390/microorganisms9010092  0.807
2020 Linan AG, Lowry PP, Miller A, Schatz GE, Sevathian JC, Edwards CE. RAD-seq reveals patterns of diversification, hybridization, and the accumulation of reproductive isolation in a clade of partially sympatric, tropical island trees. Molecular Ecology. PMID 33210759 DOI: 10.1111/mec.15736  0.355
2020 Herron SA, Rubin MJ, Ciotir C, Crews TE, Van Tassel DL, Miller AJ. Comparative Analysis of Early Life Stage Traits in Annual and Perennial Crops and Their Wild Relatives. Frontiers in Plant Science. 11: 34. PMID 32210978 DOI: 10.3389/Fpls.2020.00034  0.803
2020 Khoury CK, Greene SL, Krishnan S, Miller AJ, Moreau T, Williams KA, Rodriguez-Bonilla L, Spurrier CS, Zalapa J, Nabhan GP. Toward Integrated Conservation of North America's Crop Wild Relatives Natural Areas Journal. 40: 96. DOI: 10.3375/043.040.0111  0.515
2020 Frawley ES, Ciotir C, Micke B, Rubin MJ, Miller AJ. An Ethnobotanical Study of the Genus Elymus 1 Economic Botany. 74: 159-177. DOI: 10.1007/S12231-020-09494-0  0.812
2019 Li M, Klein LL, Duncan KE, Jiang N, Chitwood DH, Londo J, Miller AJ, Topp CN. Characterizing grapevine 3D inflorescence architecture using X-ray imaging and advanced morphometrics: implications for understanding cluster density. Journal of Experimental Botany. PMID 31504758 DOI: 10.1093/Jxb/Erz394  0.785
2019 Gaut BS, Miller AJ, Seymour DK. Living with Two Genomes: Grafting and Its Implications for Plant Genome-to-Genome Interactions, Phenotypic Variation, and Evolution. Annual Review of Genetics. PMID 31424971 DOI: 10.1146/Annurev-Genet-112618-043545  0.369
2019 Migicovsky Z, Harris ZN, Klein LL, Li M, McDermaid A, Chitwood DH, Fennell A, Kovacs LG, Kwasniewski M, Londo JP, Ma Q, Miller AJ. Rootstock effects on scion phenotypes in a 'Chambourcin' experimental vineyard. Horticulture Research. 6: 64. PMID 31069086 DOI: 10.1038/S41438-019-0146-2  0.795
2019 Schier HE, Eliot KA, Herron SA, Landfried LK, Migicovsky Z, Rubin MJ, Miller AJ. Comparative Analysis of Perennial and Annual Phaseolus Seed Nutrient Concentrations Sustainability. 11: 2787. DOI: 10.3390/Su11102787  0.384
2019 Migicovsky Z, Warschefsky E, Klein LL, Miller AJ. Using Living Germplasm Collections to Characterize, Improve, and Conserve Woody Perennials Crop Science. 59: 2365-2380. DOI: 10.2135/Cropsci2019.05.0353  0.605
2019 Ciotir C, Applequist W, Crews TE, Cristea N, DeHaan LR, Frawley E, Herron S, Magill R, Miller J, Roskov Y, Schlautman B, Solomon J, Townesmith A, Van Tassel D, Zarucchi J, ... Miller AJ, et al. Building a botanical foundation for perennial agriculture: Global inventory of wild, perennial herbaceous Fabaceae species Plants, People, Planet. 1: 375-386. DOI: 10.1002/PPP3.37  0.786
2018 Li M, An H, Angelovici R, Bagaza C, Batushansky A, Clark L, Coneva V, Donoghue MJ, Edwards E, Fajardo D, Fang H, Frank MH, Gallaher T, Gebken S, Hill T, ... ... Miller A, et al. Topological Data Analysis as a Morphometric Method: Using Persistent Homology to Demarcate a Leaf Morphospace. Frontiers in Plant Science. 9: 553. PMID 29922307 DOI: 10.3389/Fpls.2018.00553  0.768
2018 Klein LL, Miller AJ, Ciotir C, Hyma K, Uribe-Convers S, Londo J. High-throughput sequencing data clarify evolutionary relationships among North American Vitis species and improve identification in USDA Vitis germplasm collections. American Journal of Botany. 105: 215-226. PMID 29578297 DOI: 10.1002/Ajb2.1033  0.795
2018 Schlautman B, Barriball S, Ciotir C, Herron S, Miller A. Perennial Grain Legume Domestication Phase I: Criteria for Candidate Species Selection Sustainability. 10: 730. DOI: 10.3390/Su10030730  0.795
2017 Klein LL, Caito M, Chapnick C, Kitchen C, O'Hanlon R, Chitwood DH, Miller AJ. Digital Morphometrics of Two North American Grapevines (Vitis: Vitaceae) Quantifies Leaf Variation between Species, within Species, and among Individuals. Frontiers in Plant Science. 8: 373. PMID 28367159 DOI: 10.3389/Fpls.2017.00373  0.715
2016 McAllister CA, Miller AJ. Single nucleotide polymorphism discovery via genotyping by sequencing to assess population genetic structure and recurrent polyploidization in Andropogon gerardii. American Journal of Botany. PMID 27466055 DOI: 10.3732/Ajb.1600146  0.653
2016 Migicovsky Z, Sawler J, Money D, Eibach R, Miller AJ, Luby JJ, Jamieson AR, Velasco D, von Kintzel S, Warner J, Wührer W, Brown PJ, Myles S. Genomic ancestry estimation quantifies use of wild species in grape breeding. Bmc Genomics. 17: 478. PMID 27357509 DOI: 10.1186/S12864-016-2834-8  0.454
2016 Miller AJ, Gross BL. Report from The International Plant and Animal Genome Meeting. American Journal of Botany. PMID 27307208 DOI: 10.3732/Ajb.1600143  0.353
2016 Callen ST, Klein LL, Miller AJ. Climatic Niche Characterization of 13 North American Vitis Species American Journal of Enology and Viticulture. 67: 339-349. DOI: 10.5344/Ajev.2016.15110  0.791
2016 DeHaan LR, Van Tassel DL, Anderson JA, Asselin SR, Barnes R, Baute GJ, Cattani DJ, Culman SW, Dorn KM, Hulke BS, Kantar M, Larson S, David Marks M, Miller AJ, Poland J, et al. A pipeline strategy for grain crop domestication Crop Science. 56: 917-930. DOI: 10.2135/Cropsci2015.06.0356  0.49
2016 Walters SA, Bernhardt P, Joseph M, Miller AJ. Pollination and sterility in horseradish Plant Breeding. 135: 735-742. DOI: 10.1111/Pbr.12413  0.317
2015 Warschefsky EJ, Klein LL, Frank MH, Chitwood DH, Londo JP, von Wettberg EJ, Miller AJ. Rootstocks: Diversity, Domestication, and Impacts on Shoot Phenotypes. Trends in Plant Science. PMID 26698413 DOI: 10.1016/J.Tplants.2015.11.008  0.784
2015 Chitwood DH, Klein LL, O'Hanlon R, Chacko S, Greg M, Kitchen C, Miller AJ, Londo JP. Latent developmental and evolutionary shapes embedded within the grapevine leaf. The New Phytologist. PMID 26580864 DOI: 10.1111/Nph.13754  0.788
2015 McAllister C, Blaine R, Kron P, Bennett B, Garrett H, Kidson J, Matzenbacher B, Glotzbach A, Miller AJ. Environmental correlates of cytotype distribution in Andropogon gerardii (Poaceae). American Journal of Botany. 102: 92-102. PMID 25587152 DOI: 10.3732/Ajb.1400296  0.578
2015 Pap D, Miller AJ, Londo JP, Kovács LG. Population structure of Vitis rupestris, an important resource for viticulture American Journal of Enology and Viticulture. 66: 403-410. DOI: 10.5344/Ajev.2015.15012  0.674
2015 Callen ST, Miller AJ. Signatures of niche conservatism and niche shift in the North American kudzu (Pueraria montana) invasion Diversity and Distributions. DOI: 10.1111/Ddi.12341  0.783
2014 Gross BL, Kellogg EA, Miller AJ. Speaking of food: connecting basic and applied plant science. American Journal of Botany. 101: 1597-600. PMID 25326609 DOI: 10.3732/Ajb.1400409  0.41
2014 Albrecht MA, Broecker LA, Romero-Hernandez C, Miller AJ. Conservation genetics of edaphic endemics in naturally isolated habitats: A case study with Geocarpon minimum (Caryophyllaceae) Journal of the Torrey Botanical Society. 141: 1-13. DOI: 10.3159/Torrey-D-13-00052.1  0.766
2013 Miller AJ, Matasci N, Schwaninger H, Aradhya MK, Prins B, Zhong GY, Simon C, Buckler ES, Myles S. Vitis phylogenomics: hybridization intensities from a SNP array outperform genotype calls. Plos One. 8: e78680. PMID 24236035 DOI: 10.1371/Journal.Pone.0078680  0.355
2012 Miller A. Out in the cold - How big and how old? Genetic fingerprinting reveals long-lived individuals withstand climatic oscillations in the arctic-alpine Molecular Ecology. 21: 1036-1037. PMID 22360454 DOI: 10.1111/J.1365-294X.2012.05467.X  0.436
2011 Miller AJ, Gross BL. From forest to field: perennial fruit crop domestication. American Journal of Botany. 98: 1389-414. PMID 21865506 DOI: 10.3732/Ajb.1000522  0.532
2011 Grauke LJ, Mendoza-Herrera MA, Miller AJ, Wood BW. Geographic patterns of genetic variation in native pecans Tree Genetics and Genomes. 7: 917-932. DOI: 10.1007/S11295-011-0384-4  0.398
2010 Gunn BF, Aradhya M, Salick JM, Miller AJ, Yongping Y, Lin L, Xian H. Genetic variation in walnuts (Juglans regia and J. sigillata; Juglandaceae): Species distinctions, human impacts, and the conservation of agrobiodiversity in Yunnan, China. American Journal of Botany. 97: 660-71. PMID 21622428 DOI: 10.3732/Ajb.0900114  0.469
2009 Sampliner D, Miller A. Ethnobotany of horseradish (Armoracia rusticana, Brassicaceae) and its wild relatives (Armoracia spp.): Reproductive biology and local uses in their native ranges Economic Botany. 63: 303-313. DOI: 10.1007/S12231-009-9088-1  0.771
2008 Miller AJ. Characterization of a domesticated tree lineage (Spondias purpurea, Anacardiaceae) based on nuclear and chloroplast sequence data Journal of the Torrey Botanical Society. 135: 463-474. DOI: 10.3159/08-Ra-020R.1  0.392
2007 Miller A. Darwin's Harvest. New Approaches to the Origins, Evolution, and Conservation of Crops Brittonia. 59: 102. DOI: 10.1663/0007-196X(2007)59[102:Dhnatt]2.0.Co;2  0.311
2006 Miller AJ, Knouft JH. GIS-based characterization of the geographic distributions of wild and cultivated populations of the Mesoamerican fruit tree Spondias purpurea (Anacardiaceae). American Journal of Botany. 93: 1757-67. PMID 21642121 DOI: 10.3732/Ajb.93.12.1757  0.429
2006 Miller AJ, Schaal BA. Domestication and the distribution of genetic variation in wild and cultivated populations of the Mesoamerican fruit tree Spondias purpurea L. (Anacardiaceae). Molecular Ecology. 15: 1467-80. PMID 16629804 DOI: 10.1111/J.1365-294X.2006.02834.X  0.644
2005 Miller A, Schaal B. Domestication of a Mesoamerican cultivated fruit tree, Spondias purpurea Proceedings of the National Academy of Sciences of the United States of America. 102: 12801-12806. PMID 16126899 DOI: 10.1073/Pnas.0505447102  0.659
2004 Yi T, Miller AJ, Wen J. Phylogenetic and biogeographic diversification of Rhus (Anacardiaceae) in the Northern Hemisphere. Molecular Phylogenetics and Evolution. 33: 861-79. PMID 15522809 DOI: 10.1016/J.Ympev.2004.07.006  0.33
1997 Kiss JZ, Guisinger MM, Miller AJ, Stackhouse KS. Reduced gravitropism in hypocotyls of starch-deficient mutants of Arabidopsis. Plant & Cell Physiology. 38: 518-25. PMID 9210329 DOI: 10.1093/Oxfordjournals.Pcp.A029199  0.357
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