Timothy J. Cherry, Ph.D. - Publications

Affiliations: 
2017- Center for Developmental Biology and Regenerative Medicine U Washington/Seattle Children's Research Inst. 
Area:
Retinal Development
Website:
http://depts.washington.edu/cdbrm/wordpress/research-labs-center-for-developmental-biology-and-regenerative-medicine/cherry-lab/

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 VandenBosch LS, Luu K, Timms AE, Challam S, Wu Y, Lee AY, Cherry TJ. Machine Learning Prediction of Non-Coding Variant Impact in Human Retinal cis-Regulatory Elements. Translational Vision Science & Technology. 11: 16. PMID 35435921 DOI: 10.1167/tvst.11.4.16  0.603
2022 Bisbach CM, Hass DT, Thomas ED, Cherry TJ, Hurley JB. Monocarboxylate Transporter 1 (MCT1) Mediates Succinate Export in the Retina. Investigative Ophthalmology & Visual Science. 63: 1. PMID 35363247 DOI: 10.1167/iovs.63.4.1  0.648
2022 Thomas ED, Timms AE, Giles S, Harkins-Perry S, Lyu P, Hoang T, Qian J, Jackson VE, Bahlo M, Blackshaw S, Friedlander M, Eade K, Cherry TJ. Cell-specific cis-regulatory elements and mechanisms of non-coding genetic disease in human retina and retinal organoids. Developmental Cell. PMID 35303433 DOI: 10.1016/j.devcel.2022.02.018  0.765
2021 Lyu P, Hoang T, Santiago CP, Thomas ED, Timms AE, Appel H, Gimmen M, Le N, Jiang L, Kim DW, Chen S, Espinoza DF, Telger AE, Weir K, Clark BS, ... Cherry TJ, et al. Gene regulatory networks controlling temporal patterning, neurogenesis, and cell-fate specification in mammalian retina. Cell Reports. 37: 109994. PMID 34788628 DOI: 10.1016/j.celrep.2021.109994  0.756
2021 Sinha R, Grimes WN, Wallin J, Ebbinghaus BN, Luu K, Cherry T, Rieke F, Rudolph U, Wong RO, Hoon M. Transient expression of a GABA receptor subunit during early development is critical for inhibitory synapse maturation and function. Current Biology : Cb. PMID 34433078 DOI: 10.1016/j.cub.2021.07.059  0.674
2020 Cherry TJ, Yang MG, Harmin DA, Tao P, Timms AE, Bauwens M, Allikmets R, Jones EM, Chen R, De Baere E, Greenberg ME. Mapping the -regulatory architecture of the human retina reveals noncoding genetic variation in disease. Proceedings of the National Academy of Sciences of the United States of America. PMID 32265282 DOI: 10.1073/Pnas.1922501117  0.556
2019 Majidi SP, Reddy NC, Moore MJ, Chen H, Yamada T, Andzelm MM, Cherry TJ, Hu LS, Greenberg ME, Bonni A. Chromatin Environment and Cellular Context Specify Compensatory Activity of Paralogous MEF2 Transcription Factors. Cell Reports. 29: 2001-2015.e5. PMID 31722213 DOI: 10.1016/J.Celrep.2019.10.033  0.734
2018 Van de Sompele S, Smith C, Karali M, Corton M, Van Schil K, Peelman F, Cherry T, Rosseel T, Verdin H, Derolez J, Van Laethem T, Khan KN, McKibbin M, Toomes C, Ali M, et al. Biallelic sequence and structural variants in RAX2 are a novel cause for autosomal recessive inherited retinal disease. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 30377383 DOI: 10.1038/s41436-018-0345-5  0.428
2018 Van Schil K, Naessens S, Van de Sompele S, Carron M, Aslanidis A, Van Cauwenbergh C, Mayer AK, Van Heetvelde M, Bauwens M, Verdin H, Coppieters F, Greenberg ME, Yang MG, Karlstetter M, Langmann T, ... ... Cherry TJ, et al. Correction: Mapping the genomic landscape of inherited retinal disease genes prioritizes genes prone to coding and noncoding copy-number variations. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 30297699 DOI: 10.1038/s41436-018-0305-0  0.447
2018 Jamshidi F, Place EM, Mehrotra S, Navarro-Gomez D, Maher M, Branham KE, Valkanas E, Cherry TJ, Lek M, MacArthur D, Pierce EA, Bujakowska KM. Contribution of noncoding pathogenic variants to RPGRIP1-mediated inherited retinal degeneration. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 30072743 DOI: 10.1038/S41436-018-0104-7  0.38
2017 Van Schil K, Naessens S, Van de Sompele S, Carron M, Aslanidis A, Van Cauwenbergh C, Kathrin Mayer A, Van Heetvelde M, Bauwens M, Verdin H, Coppieters F, Greenberg ME, Yang MG, Karlstetter M, Langmann T, ... ... Cherry TJ, et al. Mapping the genomic landscape of inherited retinal disease genes prioritizes genes prone to coding and noncoding copy-number variations. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 28749477 DOI: 10.1038/gim.2017.97  0.494
2015 Andzelm MM, Cherry TJ, Harmin DA, Boeke AC, Lee C, Hemberg M, Pawlyk B, Malik AN, Flavell SW, Sandberg MA, Raviola E, Greenberg ME. MEF2D drives photoreceptor development through a genome-wide competition for tissue-specific enhancers. Neuron. 86: 247-63. PMID 25801704 DOI: 10.1016/J.Neuron.2015.02.038  0.712
2011 Cherry TJ, Wang S, Bormuth I, Schwab M, Olson J, Cepko CL. NeuroD factors regulate cell fate and neurite stratification in the developing retina. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 7365-79. PMID 21593321 DOI: 10.1523/Jneurosci.2555-10.2011  0.65
2009 Cherry TJ, Trimarchi JM, Stadler MB, Cepko CL. Development and diversification of retinal amacrine interneurons at single cell resolution. Proceedings of the National Academy of Sciences of the United States of America. 106: 9495-500. PMID 19470466 DOI: 10.1073/pnas.0903264106  0.735
2005 Sun T, Patoine C, Abu-Khalil A, Visvader J, Sum E, Cherry TJ, Orkin SH, Geschwind DH, Walsh CA. Early asymmetry of gene transcription in embryonic human left and right cerebral cortex. Science (New York, N.Y.). 308: 1794-8. PMID 15894532 DOI: 10.1126/Science.1110324  0.587
2004 Sheen VL, Basel-Vanagaite L, Goodman JR, Scheffer IE, Bodell A, Ganesh VS, Ravenscroft R, Hill RS, Cherry TJ, Shugart YY, Barkovich J, Straussberg R, Walsh CA. Etiological heterogeneity of familial periventricular heterotopia and hydrocephalus. Brain & Development. 26: 326-34. PMID 15165674 DOI: 10.1016/J.Braindev.2003.09.004  0.579
2003 Ferland RJ, Cherry TJ, Preware PO, Morrisey EE, Walsh CA. Characterization of Foxp2 and Foxp1 mRNA and protein in the developing and mature brain. The Journal of Comparative Neurology. 460: 266-79. PMID 12687690 DOI: 10.1002/Cne.10654  0.619
2003 Sheen VL, Topçu M, Berkovic S, Yalnizoglu D, Blatt I, Bodell A, Hill RS, Ganesh VS, Cherry TJ, Shugart YY, Walsh CA. Autosomal recessive form of periventricular heterotopia. Neurology. 60: 1108-12. PMID 12682315 DOI: 10.1212/01.Wnl.0000055898.00349.02  0.563
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