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Matthew W. Thomson, Ph.D. - Publications

Affiliations: 
2011 Harvard University, Cambridge, MA, United States 
Area:
Biology
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Gehring J, Hwee Park J, Chen S, Thomson M, Pachter L. Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins. Nature Biotechnology. PMID 31873215 DOI: 10.1038/S41587-019-0372-Z  0.34
2019 Ross TD, Lee HJ, Qu Z, Banks RA, Phillips R, Thomson M. Controlling organization and forces in active matter through optically defined boundaries. Nature. 572: 224-229. PMID 31391558 DOI: 10.1038/S41586-019-1447-1  0.307
2018 Xu AM, Liu Q, Takata KL, Jeoung S, Su Y, Antoshechkin I, Chen S, Thomson M, Heath JR. Integrated measurement of intracellular proteins and transcripts in single cells. Lab On a Chip. PMID 30178802 DOI: 10.1039/C8Lc00639C  0.399
2018 Hendel NL, Thomson M, Marshall WF. Diffusion as a Ruler: Modeling Kinesin Diffusion as a Length Sensor for Intraflagellar Transport. Biophysical Journal. 114: 663-674. PMID 29414712 DOI: 10.1016/J.Bpj.2017.11.3784  0.323
2018 Obernier K, Cebrian-Silla A, Thomson M, Parraguez JI, Anderson R, Guinto C, Rodas Rodriguez J, Garcia-Verdugo JM, Alvarez-Buylla A. Adult Neurogenesis Is Sustained by Symmetric Self-Renewal and Differentiation. Cell Stem Cell. 22: 221-234.e8. PMID 29395056 DOI: 10.1016/J.Stem.2018.01.003  0.392
2017 Aull KH, Tanner EJ, Thomson M, Weinberger LS. Transient Thresholding: A Mechanism Enabling Noncooperative Transcriptional Circuitry to Form a Switch. Biophysical Journal. 112: 2428-2438. PMID 28591615 DOI: 10.1016/J.Bpj.2017.05.002  0.332
2016 Tsai YH, Nattiv R, Dedhia PH, Nagy MS, Chin AM, Thomson M, Klein O, Spence J. In vitro patterning of pluripotent stem cell-derived intestine recapitulates in vivo human development. Development (Cambridge, England). PMID 27927684 DOI: 10.1242/Dev.138453  0.335
2016 Thomson M. Signaling Boundary Conditions Drive Self-Organization of Human "Gastruloids". Developmental Cell. 39: 279-280. PMID 27825435 DOI: 10.1016/J.Devcel.2016.10.016  0.347
2016 Heimberg G, Bhatnagar R, El-Samad H, Thomson M. Low Dimensionality in Gene Expression Data Enables the Accurate Extraction of Transcriptional Programs from Shallow Sequencing. Cell Systems. 2: 239-50. PMID 27135536 DOI: 10.1016/J.Cels.2016.04.001  0.313
2016 Myers SA, Peddada S, Chatterjee N, Freidreich T, Tomoda K, Krings G, Thomas S, Broeker M, Maynard J, Thomson M, Pollard K, Yamanaka S, Burlingame AL, Panning B. SOX2 O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells. Elife. 5. PMID 26949256 DOI: 10.7554/Elife.10647  0.356
2016 Morsut L, Roybal KT, Xiong X, Gordley RM, Coyle SM, Thomson M, Lim WA. Engineering Customized Cell Sensing and Response Behaviors Using Synthetic Notch Receptors. Cell. PMID 26830878 DOI: 10.1016/J.Cell.2016.01.012  0.352
2016 Myers SA, Peddada S, Chatterjee N, Friedrich T, Tomoda K, Krings G, Thomas S, Maynard J, Broeker M, Thomson M, Pollard K, Yamanaka S, Burlingame AL, Panning B. Author response: SOX2 O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells Elife. DOI: 10.7554/Elife.10647.033  0.331
2015 Sokolik C, Liu Y, Bauer D, McPherson J, Broeker M, Heimberg G, Qi LS, Sivak DA, Thomson M. Transcription factor competition allows embryonic stem cells to distinguish authentic signals from noise. Cell Systems. 1: 117-129. PMID 26405695 DOI: 10.1016/J.Cels.2015.08.001  0.438
2015 Finkbeiner SR, Hill DR, Altheim CH, Dedhia PH, Taylor MJ, Tsai YH, Chin AM, Mahe MM, Watson CL, Freeman JJ, Nattiv R, Thomson M, Klein OD, Shroyer NF, Helmrath MA, et al. Transcriptome-wide Analysis Reveals Hallmarks of Human Intestine Development and Maturation In Vitro and In Vivo. Stem Cell Reports. PMID 26050928 DOI: 10.1016/J.Stemcr.2015.04.010  0.339
2015 Cerchiari AE, Garbe JC, Jee NY, Todhunter ME, Broaders KE, Peehl DM, Desai TA, LaBarge MA, Thomson M, Gartner ZJ. A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity. Proceedings of the National Academy of Sciences of the United States of America. 112: 2287-92. PMID 25633040 DOI: 10.1073/Pnas.1410776112  0.361
2014 Sivak DA, Thomson M. Environmental statistics and optimal regulation. Plos Computational Biology. 10: e1003826. PMID 25254493 DOI: 10.1371/Journal.Pcbi.1003826  0.303
2011 Thomson M, Liu SJ, Zou LN, Smith Z, Meissner A, Ramanathan S. Pluripotency factors in embryonic stem cells regulate differentiation into germ layers. Cell. 145: 875-89. PMID 21663792 DOI: 10.1016/J.Cell.2011.05.017  0.536
2009 Thomson M, Gunawardena J. The rational parameterisation theorem for multisite post-translational modification systems Journal of Theoretical Biology. 261: 626-636. PMID 19765594 DOI: 10.1016/J.Jtbi.2009.09.003  0.3
2008 Ben-Porath I, Thomson MW, Carey VJ, Ge R, Bell GW, Regev A, Weinberg RA. An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors. Nature Genetics. 40: 499-507. PMID 18443585 DOI: 10.1038/Ng.127  0.376
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