Arjen van Ooyen - Publications

Affiliations: 
Vrije Universiteit Amsterdam, Amsterdam, Netherlands 
Website:
http://www.falw.vu/~aooyen/

78 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Avella Gonzalez OJ, Mansvelder HD, van Pelt J, van Ooyen A. H-Channels Affect Frequency, Power and Amplitude Fluctuations of Neuronal Network Oscillations. Frontiers in Computational Neuroscience. 9: 141. PMID 26635594 DOI: 10.3389/fncom.2015.00141  1
2014 Butz M, Steenbuck ID, van Ooyen A. Homeostatic structural plasticity can account for topology changes following deafferentation and focal stroke. Frontiers in Neuroanatomy. 8: 115. PMID 25360087 DOI: 10.3389/fnana.2014.00115  1
2014 van Pelt J, van Ooyen A, Uylings HB. Axonal and dendritic density field estimation from incomplete single-slice neuronal reconstructions. Frontiers in Neuroanatomy. 8: 54. PMID 25009472 DOI: 10.3389/fnana.2014.00054  1
2014 Avella Gonzalez OJ, van Aerde KI, Mansvelder HD, van Pelt J, van Ooyen A. Inter-network interactions: impact of connections between oscillatory neuronal networks on oscillation frequency and pattern. Plos One. 9: e100899. PMID 25007325 DOI: 10.1371/journal.pone.0100899  0.52
2014 Groen MR, Paulsen O, Pérez-Garci E, Nevian T, Wortel J, Dekker MP, Mansvelder HD, van Ooyen A, Meredith RM. Development of dendritic tonic GABAergic inhibition regulates excitability and plasticity in CA1 pyramidal neurons. Journal of Neurophysiology. 112: 287-99. PMID 24760781 DOI: 10.1152/jn.00066.2014  1
2014 Butz M, Steenbuck ID, van Ooyen A. Homeostatic structural plasticity increases the efficiency of small-world networks. Frontiers in Synaptic Neuroscience. 6: 7. PMID 24744727 DOI: 10.3389/fnsyn.2014.00007  1
2014 Hjorth JJ, van Pelt J, Mansvelder HD, van Ooyen A. Competitive dynamics during resource-driven neurite outgrowth. Plos One. 9: e86741. PMID 24498280 DOI: 10.1371/journal.pone.0086741  1
2014 McAssey MP, Bijma F, Tarigan B, van Pelt J, van Ooyen A, de Gunst M. A morpho-density approach to estimating neural connectivity. Plos One. 9: e86526. PMID 24489738 DOI: 10.1371/journal.pone.0086526  1
2014 van Ooyen A, Carnell A, de Ridder S, Tarigan B, Mansvelder HD, Bijma F, de Gunst M, van Pelt J. Independently outgrowing neurons and geometry-based synapse formation produce networks with realistic synaptic connectivity. Plos One. 9: e85858. PMID 24454938 DOI: 10.1371/journal.pone.0085858  1
2013 van Pelt J, van Ooyen A. Estimating neuronal connectivity from axonal and dendritic density fields. Frontiers in Computational Neuroscience. 7: 160. PMID 24324430 DOI: 10.3389/fncom.2013.00160  1
2013 Butz M, van Ooyen A. A simple rule for dendritic spine and axonal bouton formation can account for cortical reorganization after focal retinal lesions. Plos Computational Biology. 9: e1003259. PMID 24130472 DOI: 10.1371/journal.pcbi.1003259  1
2012 Olde Scheper TV, Mansvelder HD, van Ooyen A. Short term depression unmasks the ghost frequency. Plos One. 7: e50189. PMID 23227159 DOI: 10.1371/journal.pone.0050189  1
2012 Avella Gonzalez OJ, van Aerde KI, van Elburg RA, Poil SS, Mansvelder HD, Linkenkaer-Hansen K, van Pelt J, van Ooyen A. External drive to inhibitory cells induces alternating episodes of high- and low-amplitude oscillations. Plos Computational Biology. 8: e1002666. PMID 22956901 DOI: 10.1371/journal.pcbi.1002666  1
2012 Sterratt DC, Groen MR, Meredith RM, van Ooyen A. Spine calcium transients induced by synaptically-evoked action potentials can predict synapse location and establish synaptic democracy. Plos Computational Biology. 8: e1002545. PMID 22719238 DOI: 10.1371/journal.pcbi.1002545  1
2012 Rombouts JO, Van Ooyen A, Roelfsema PR, Bohte SM. Biologically plausible multi-dimensional reinforcement learning in neural networks Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7552: 443-450. DOI: 10.1007/978-3-642-33269-2_56  1
2011 Jansen R, Timmerman J, Loos M, Spijker S, van Ooyen A, Brussaard AB, Mansvelder HD, Smit AB, de Gunst M, Linkenkaer-Hansen K. Novel candidate genes associated with hippocampal oscillations. Plos One. 6: e26586. PMID 22066001 DOI: 10.1371/journal.pone.0026586  1
2011 van Ooyen A. Using theoretical models to analyse neural development. Nature Reviews. Neuroscience. 12: 311-26. PMID 21587288 DOI: 10.1038/nrn3031  1
2011 Schmitz SK, Hjorth JJ, Joemai RM, Wijntjes R, Eijgenraam S, de Bruijn P, Georgiou C, de Jong AP, van Ooyen A, Verhage M, Cornelisse LN, Toonen RF, Veldkamp WJ, Veldkamp W. Automated analysis of neuronal morphology, synapse number and synaptic recruitment. Journal of Neuroscience Methods. 195: 185-93. PMID 21167201 DOI: 10.1016/j.jneumeth.2010.12.011  1
2011 Schmitz SK, Hjorth JJJ, Joemai RMS, Wijntjes R, Eijgenraam S, de Bruijn P, Georgiou C, de Jong APH, van Ooyen A, Verhage M, Cornelisse LN, Toonen RF, Veldkamp WJH. Corrigendum to " Automated analysis of neuronal morphology, synapse number and synaptic recruitment" [J. Neurosci. Methods 195 (2) (2011) 185-193] Journal of Neuroscience Methods. 197: 190. DOI: 10.1016/j.jneumeth.2011.01.028  1
2010 van Pelt J, Carnell A, de Ridder S, Mansvelder HD, van Ooyen A. An algorithm for finding candidate synaptic sites in computer generated networks of neurons with realistic morphologies. Frontiers in Computational Neuroscience. 4: 148. PMID 21160548 DOI: 10.3389/fncom.2010.00148  1
2010 van Elburg RA, van Ooyen A. Impact of dendritic size and dendritic topology on burst firing in pyramidal cells. Plos Computational Biology. 6: e1000781. PMID 20485556 DOI: 10.1371/journal.pcbi.1000781  1
2010 Roelfsema PR, van Ooyen A, Watanabe T. Perceptual learning rules based on reinforcers and attention. Trends in Cognitive Sciences. 14: 64-71. PMID 20060771 DOI: 10.1016/j.tics.2009.11.005  1
2010 Houweling AR, van Ooyen A. Homeostasis at Multiple Spatial and Temporal Scales Encyclopedia of Neuroscience. 1189-1194. DOI: 10.1016/B978-008045046-9.01408-X  1
2009 Jansen R, Linkenkaer-Hansen K, Heistek T, Timmerman J, Mansvelder HD, Brussaard AB, de Gunst M, van Ooyen A. Inbred mouse strains differ in multiple hippocampal activity traits. The European Journal of Neuroscience. 30: 1092-100. PMID 19735297 DOI: 10.1111/j.1460-9568.2009.06883.x  1
2009 Butz M, van Ooyen A, Wörgötter F. A model for cortical rewiring following deafferentation and focal stroke. Frontiers in Computational Neuroscience. 3: 10. PMID 19680468 DOI: 10.3389/neuro.10.010.2009  1
2009 Koene RA, Tijms B, van Hees P, Postma F, de Ridder A, Ramakers GJ, van Pelt J, van Ooyen A. NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics. 7: 195-210. PMID 19672726 DOI: 10.1007/s12021-009-9052-3  1
2009 Kaiser M, Hilgetag CC, van Ooyen A. A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions. Cerebral Cortex (New York, N.Y. : 1991). 19: 3001-10. PMID 19435708 DOI: 10.1093/cercor/bhp071  1
2009 van Elburg RA, van Ooyen A. Generalization of the event-based Carnevale-Hines integration scheme for integrate-and-fire models. Neural Computation. 21: 1913-30. PMID 19292645 DOI: 10.1162/neco.2009.07-08-815  1
2009 Montez T, Poil SS, Jones BF, Manshanden I, Verbunt JP, van Dijk BW, Brussaard AB, van Ooyen A, Stam CJ, Scheltens P, Linkenkaer-Hansen K. Altered temporal correlations in parietal alpha and prefrontal theta oscillations in early-stage Alzheimer disease. Proceedings of the National Academy of Sciences of the United States of America. 106: 1614-9. PMID 19164579 DOI: 10.1073/pnas.0811699106  1
2009 Butz M, Wörgötter F, van Ooyen A. Activity-dependent structural plasticity. Brain Research Reviews. 60: 287-305. PMID 19162072 DOI: 10.1016/j.brainresrev.2008.12.023  1
2008 Butz M, Teuchert-Noodt G, Grafen K, van Ooyen A. Inverse relationship between adult hippocampal cell proliferation and synaptic rewiring in the dentate gyrus. Hippocampus. 18: 879-98. PMID 18481284 DOI: 10.1002/hipo.20445  1
2008 Poil SS, van Ooyen A, Linkenkaer-Hansen K. Avalanche dynamics of human brain oscillations: relation to critical branching processes and temporal correlations. Human Brain Mapping. 29: 770-7. PMID 18454457 DOI: 10.1002/hbm.20590  1
2008 Vajda I, van Pelt J, Wolters P, Chiappalone M, Martinoia S, van Someren E, van Ooyen A. Low-frequency stimulation induces stable transitions in stereotypical activity in cortical networks. Biophysical Journal. 94: 5028-39. PMID 18339760 DOI: 10.1529/biophysj.107.112730  1
2008 Goodhill G, Baker C, Balasubramanian V, Bazhenov M, Beck J, Becker S, Bethge M, Boahen K, Boden M, Bonin V, Bouret S, Fairhall A, Flash T, French R, Gillies A, ... ... Van Ooyen A, et al. Network: Computation in Neural Systems: Editorial Network: Computation in Neural Systems. 19: 1-2. DOI: 10.1080/09548980801915409  1
2007 Linkenkaer-Hansen K, Smit DJ, Barkil A, van Beijsterveldt TE, Brussaard AB, Boomsma DI, van Ooyen A, de Geus EJ. Genetic contributions to long-range temporal correlations in ongoing oscillations. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 27: 13882-9. PMID 18077700 DOI: 10.1523/JNEUROSCI.3083-07.2007  1
2006 Graham BP, van Ooyen A. Mathematical modelling and numerical simulation of the morphological development of neurons. Bmc Neuroscience. 7: S9. PMID 17118163 DOI: 10.1186/1471-2202-7-S1-S9  1
2006 Steuber V, Willshaw D, Van Ooyen A. Generation of time delays: simplified models of intracellular signalling in cerebellar Purkinje cells. Network (Bristol, England). 17: 173-91. PMID 16818396 DOI: 10.1080/09548980500520328  1
2006 van Ooyen A, Roelfsema PR. Envisioning the reward. Neuron. 50: 188-90. PMID 16630831 DOI: 10.1016/j.neuron.2006.04.008  1
2006 Janulevicius A, van Pelt J, van Ooyen A. Compartment volume influences microtubule dynamic instability: a model study. Biophysical Journal. 90: 788-98. PMID 16410484 DOI: 10.1529/biophysj.105.059410  1
2005 Roelfsema PR, van Ooyen A. Attention-gated reinforcement learning of internal representations for classification. Neural Computation. 17: 2176-214. PMID 16105222 DOI: 10.1162/0899766054615699  1
2005 Bosman L, Lodder JC, van Ooyen A, Brussaard AB. Role of synaptic inhibition in spatiotemporal patterning of cortical activity. Progress in Brain Research. 147: 201-4. PMID 15581707 DOI: 10.1016/S0079-6123(04)47015-0  1
2005 Kiddie G, McLean D, Van Ooyen A, Graham B. Biologically plausible models of neurite outgrowth. Progress in Brain Research. 147: 67-80. PMID 15581698 DOI: 10.1016/S0079-6123(04)47006-X  1
2004 Graham BP, van Ooyen A. Transport limited effects in a model of dendritic branching. Journal of Theoretical Biology. 230: 421-32. PMID 15321709 DOI: 10.1016/j.jtbi.2004.06.007  1
2004 Van Pelt J, Kamermans M, Levelt C, Van Ooyen A, Ramakers G, Roelfsema P. Progress in Brain Research: Preface Progress in Brain Research. 147: ix-x. DOI: 10.1016/S0079-6123(04)47027-7  1
2004 McLean DR, van Ooyen A, Graham BP. Continuum model for tubulin-driven neurite elongation Neurocomputing. 58: 511-516. DOI: 10.1016/j.neucom.2004.01.088  1
2004 van Elburg RAJ, van Ooyen A. A new measure for bursting Neurocomputing. 58: 497-502. DOI: 10.1016/j.neucom.2004.01.086  1
2004 Sterratt DC, van Ooyen A. Does a dendritic democracy need a ruler? Neurocomputing. 58: 437-442. DOI: 10.1016/j.neucom.2004.01.078  1
2004 van Ooyen A, Bosman L, Brussaard A. Influence of the decay time of the GABAergic postsynaptic current on the spatial spread of network activity Neurocomputing. 58: 291-295. DOI: 10.1016/j.neucom.2004.01.058  1
2002 van Ooyen A, Duijnhouwer J, Remme MW, van Pelt J. The effect of dendritic topology on firing patterns in model neurons. Network (Bristol, England). 13: 311-25. PMID 12222816 DOI: 10.1088/0954-898X/13/3/304  1
2002 Sterratt DC, Van Ooyen A. Does morphology influence temporal plasticity? Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2415: 186-191.  1
2001 van Pelt J, van Ooyen A, Uylings HB. The need for integrating neuronal morphology databases and computational environments in exploring neuronal structure and function. Anatomy and Embryology. 204: 255-65. PMID 11720232 DOI: 10.1007/s004290100197  1
2001 van Ooyen A. Competition in the development of nerve connections: a review of models. Network (Bristol, England). 12: R1-47. PMID 11254084 DOI: 10.1088/0954-898X/12/1/201  1
2001 Ramakers GJ, Avci B, van Hulten P, van Ooyen A, van Pelt J, Pool CW, Lequin MB. The role of calcium signaling in early axonal and dendritic morphogenesis of rat cerebral cortex neurons under non-stimulated growth conditions. Brain Research. Developmental Brain Research. 126: 163-72. PMID 11248350 DOI: 10.1016/S0165-3806(00)00148-6  1
2001 Duijnhouwer J, Remme MWH, Van Ooyen A, Van Pelt J. Influence of dendritic topology on firing patterns in model neurons Neurocomputing. 38: 183-189. DOI: 10.1016/S0925-2312(01)00502-1  1
2001 Van Ooyen A, P. Graham B, J.a. Ramakers G. Competition for tubulin between growing neurites during development Neurocomputing. 38: 73-78. DOI: 10.1016/S0925-2312(01)00487-8  1
2001 Graham BP, Van Ooyen A. Compartmental models of growing neurites Neurocomputing. 38: 31-36. DOI: 10.1016/S0925-2312(01)00463-5  1
2000 van Ooyen A, Willshaw DJ. Development of nerve connections under the control of neurotrophic factors: parallels with consumer-resource systems in population biology. Journal of Theoretical Biology. 206: 195-210. PMID 10966757 DOI: 10.1006/jtbi.2000.2114  1
2000 Eglen SJ, van Ooyen A, Willshaw DJ. Lateral cell movement driven by dendritic interactions is sufficient to form retinal mosaics. Network (Bristol, England). 11: 103-18. PMID 10735531  1
2000 Van Ooyen A, Willshaw DJ, Ramakers GJA. Influence of dendritic morphology on axonal competition Neurocomputing. 32: 255-260. DOI: 10.1016/S0925-2312(00)00172-7  1
2000 Hentschel HGE, Van Ooyen A. Dynamic mechanisms for bundling and guidance during neural network formation Physica a: Statistical Mechanics and Its Applications. 288: 369-379. DOI: 10.1016/S0378-4371(00)00434-9  1
1999 van Ooyen A, Willshaw DJ. Competition for neurotrophic factor in the development of nerve connections. Proceedings. Biological Sciences / the Royal Society. 266: 883-92. PMID 10380678 DOI: 10.1098/rspb.1999.0719  1
1999 van Ooyen A, Willshaw DJ. Poly- and mononeuronal innervation in a model for the development of neuromuscular connections. Journal of Theoretical Biology. 196: 495-511. PMID 10036202 DOI: 10.1006/jtbi.1998.0849  1
1999 Eglen SJ, van Ooyen A. Modelling retinal mosaic development with dendritic outgrowth and lateral cell movement Iee Conference Publication. 1: 377-382.  1
1997 van Oss C, van Ooyen A. Effects of inhibition on neural network development through activity-dependent neurite outgrowth. Journal of Theoretical Biology. 185: 263-80. PMID 9135804 DOI: 10.1006/jtbi.1996.0361  1
1997 Van Ooyen A, Willshaw DJ. Competition amongst neurons for neurotrophins Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1327: 140-144.  1
1996 van Pelt J, van Ooyen A, Corner MA. Growth cone dynamics and activity-dependent processes in neuronal network development. Progress in Brain Research. 108: 333-46. PMID 8979812  1
1996 van Ooyen A, van Pelt J. Complex periodic behaviour in a neural network model with activity-dependent neurite outgrowth. Journal of Theoretical Biology. 179: 229-42. PMID 8762335 DOI: 10.1006/jtbi.1996.0063  1
1996 Van Ooyen A. Network connectivity changes through activity-dependent neurite outgrowth Neural Processing Letters. 3: 123-130.  1
1995 Van Ooyen A, Van Pelt J, Corner MA. Implications of activity dependent neurite outgrowth for neuronal morphology and network development. Journal of Theoretical Biology. 172: 63-82. PMID 7891450 DOI: 10.1006/jtbi.1995.0005  1
1994 van Ooyen A, van Pelt J. Activity-dependent neurite outgrowth and neural network development. Progress in Brain Research. 102: 245-59. PMID 7800816 DOI: 10.1016/S0079-6123(08)60544-0  1
1994 van Ooyen A. Activity-dependent neural network development Network: Computation in Neural Systems. 5: 401-423. DOI: 10.1088/0954-898X_5_3_006  1
1994 Van Ooyen A, Van Pelt J. Activity-dependent outgrowth of neurons and overshoot phenomena in developing neural networks Journal of Theoretical Biology. 167: 27-43. DOI: 10.1006/jtbi.1994.1047  1
1993 van Ooyen A, Nienhuis B. Pattern recognition in the neocognitron is improved by neuronal adaptation. Biological Cybernetics. 70: 47-53. PMID 8312398 DOI: 10.1007/BF00202565  1
1993 van Ooyen A, Nienhuis B. Response to letter by N. Weymaere Neural Networks. 6: 611-612. DOI: 10.1016/S0893-6080(05)80105-4  1
1992 van Ooyen A, van Pelt J, Corner MA, da Silva FH, van Ooyten A. The emergence of long-lasting transients of activity in simple neural networks. Biological Cybernetics. 67: 269-77. PMID 1498190 DOI: 10.1007/BF00204400  0.52
1992 van Ooyen A, van Pelt J, Corner MA, Lopes da Silva FH. Long-lasting transients of activation in neural networks Neurocomputing. 4: 75-87. DOI: 10.1016/0925-2312(92)90045-Q  1
1992 Van Ooyen A, Nienhuis B. Improving the convergence of the back-propagation algorithm Neural Networks. 5: 465-471. DOI: 10.1016/0893-6080(92)90008-7  1
1992 van Ooyen A, van Pelt J, Corner MA, da Silva FHL. The emergence of long-lasting transients of activity in simple neural networks Biological Cybernetics. 68: 93. DOI: 10.1007/BF00203141  1
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