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Vikram Pattanayak, Ph.D. - Publications

Affiliations: 
2011 Harvard University, Cambridge, MA, United States 
Area:
The Chemistry of Molecular Evolution
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13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Garrood WT, Kranjc N, Petri K, Kim DY, Guo JA, Hammond AM, Morianou I, Pattanayak V, Joung JK, Crisanti A, Simoni A. Analysis of off-target effects in CRISPR-based gene drives in the human malaria mosquito. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34050017 DOI: 10.1073/pnas.2004838117  0.346
2016 Kleinstiver BP, Pattanayak V, Prew MS, Tsai SQ, Nguyen NT, Zheng Z, Keith Joung J. High-fidelity CRISPR-Cas9 nucleases with no detectable genome-wide off-target effects. Nature. PMID 26735016 DOI: 10.1038/Nature16526  0.618
2016 Kleinstiver BP, Pattanayak V, Prew MS, Tsai SQ, Nguyen NT, Joung JK. 731. High-Fidelity CRISPR-Cas9 Nucleases with No Detectable Genome-Wide Off-Target Effects Molecular Therapy. 24. DOI: 10.1016/S1525-0016(16)33539-0  0.614
2015 Davis KM, Pattanayak V, Thompson DB, Zuris JA, Liu DR. Small molecule-triggered Cas9 protein with improved genome-editing specificity. Nature Chemical Biology. 11: 316-8. PMID 25848930 DOI: 10.1038/Nchembio.1793  0.64
2014 Pattanayak V, Guilinger JP, Liu DR. Determining the specificities of TALENs, Cas9, and other genome-editing enzymes. Methods in Enzymology. 546: 47-78. PMID 25398335 DOI: 10.1016/B978-0-12-801185-0.00003-9  0.74
2014 Guilinger JP, Pattanayak V, Reyon D, Tsai SQ, Sander JD, Joung JK, Liu DR. Broad specificity profiling of TALENs results in engineered nucleases with improved DNA-cleavage specificity Nature Methods. 11: 429-435. PMID 24531420 DOI: 10.1038/Nmeth.2845  0.734
2014 Pattanayak V, Guilinger JP, Liu DR. Determining the specificities of TALENs, cas9, and other genome-editing enzymes Methods in Enzymology. 546: 47-78. DOI: 10.1016/B978-0-12-801185-0.00003-9  0.711
2013 Sander JD, Ramirez CL, Linder SJ, Pattanayak V, Shoresh N, Ku M, Foden JA, Reyon D, Bernstein BE, Liu DR, Joung JK. In silico abstraction of zinc finger nuclease cleavage profiles reveals an expanded landscape of off-target sites. Nucleic Acids Research. 41: e181. PMID 23945932 DOI: 10.1093/Nar/Gkt716  0.627
2013 Pattanayak V, Lin S, Guilinger JP, Ma E, Doudna JA, Liu DR. High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity. Nature Biotechnology. 31: 839-43. PMID 23934178 DOI: 10.1038/Nbt.2673  0.717
2011 Pattanayak V, Ramirez CL, Joung JK, Liu DR. Revealing off-target cleavage specificities of zinc-finger nucleases by in vitro selection. Nature Methods. 8: 765-70. PMID 21822273 DOI: 10.1038/Nmeth.1670  0.69
2006 Doyon JB, Pattanayak V, Meyer CB, Liu DR. Directed evolution and substrate specificity profile of homing endonuclease I-SceI. Journal of the American Chemical Society. 128: 2477-84. PMID 16478204 DOI: 10.1021/Ja057519L  0.746
2005 Gifford LK, Jordan D, Pattanayak V, Vernovsky K, Do BT, Gewirtz AM, Lu P. Stemless self-quenching reporter molecules identify target sequences in mRNA. Analytical Biochemistry. 347: 77-88. PMID 16246289 DOI: 10.1016/J.Ab.2005.08.030  0.445
2005 Gifford LK, Opalinska JB, Jordan D, Pattanayak V, Greenham P, Kalota A, Robbins M, Vernovsky K, Rodriguez LC, Do BT, Lu P, Gewirtz AM. Identification of antisense nucleic acid hybridization sites in mRNA molecules with self-quenching fluorescent reporter molecules. Nucleic Acids Research. 33: e28. PMID 15718294 DOI: 10.1093/Nar/Gni024  0.323
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