| Year |
Citation |
Score |
| 2022 |
Larson KE, Oguz I. Synthetic Atrophy for Longitudinal Cortical Surface Analyses. Frontiers in Neuroimaging. 1: 861687. PMID 37555187 DOI: 10.3389/fnimg.2022.861687 |
0.368 |
|
| 2022 |
Liu Y, Bao S, Englot DJ, Morgan VL, Taylor WD, Wei Y, Oguz I, Landman BA, Lyu I. Hierarchical particle optimization for cortical shape correspondence in temporal lobe resection. Computers in Biology and Medicine. 152: 106414. PMID 36525831 DOI: 10.1016/j.compbiomed.2022.106414 |
0.628 |
|
| 2022 |
Stoebner ZA, Hett K, Lyu I, Johnson H, Paulsen JS, Long JD, Oguz I. Comprehensive shape analysis of the cortex in Huntington's disease. Human Brain Mapping. PMID 36409662 DOI: 10.1002/hbm.26125 |
0.624 |
|
| 2021 |
Liu Y, Englot DJ, Morgan VL, Taylor WD, Wei Y, Oguz I, Landman BA, Lyu I. Establishing Surface Correspondence for Post-surgical Cortical Thickness Changes in Temporal Lobe Epilepsy. Proceedings of Spie--the International Society For Optical Engineering. 11596. PMID 34531630 DOI: 10.1117/12.2580808 |
0.653 |
|
| 2021 |
Hett K, Lyu I, Trujillo P, Lopez AM, Aumann M, Larson KE, Hedera P, Dawant B, Landman BA, Claassen DO, Oguz I. Anatomical texture patterns identify cerebellar distinctions between essential tremor and Parkinson's disease. Human Brain Mapping. PMID 33755270 DOI: 10.1002/hbm.25331 |
0.647 |
|
| 2020 |
Carass A, Roy S, Gherman A, Reinhold JC, Jesson A, Arbel T, Maier O, Handels H, Ghafoorian M, Platel B, Birenbaum A, Greenspan H, Pham DL, Crainiceanu CM, Calabresi PA, ... ... Oguz I, et al. Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis. Scientific Reports. 10: 8242. PMID 32427874 DOI: 10.1038/S41598-020-64803-W |
0.322 |
|
| 2020 |
Oguz I, Yushkevich N, Pouch A, Oguz BU, Wang J, Parameshwaran S, Gee J, Yushkevich PA, Schwartz N. Minimally interactive placenta segmentation from three-dimensional ultrasound images. Journal of Medical Imaging (Bellingham, Wash.). 7: 014004. PMID 32118089 DOI: 10.1117/1.Jmi.7.1.014004 |
0.353 |
|
| 2019 |
Malone JD, El-Haddad MT, Yerramreddy SS, Oguz I, Tao YK. Handheld spectrally encoded coherence tomography and reflectometry for motion-corrected ophthalmic optical coherence tomography and optical coherence tomography angiography. Neurophotonics. 6: 041102. PMID 32042852 DOI: 10.1117/1.Nph.6.4.041102 |
0.344 |
|
| 2018 |
Yushkevich PA, Pashchinskiy A, Oguz I, Mohan S, Schmitt JE, Stein JM, Zukić D, Vicory J, McCormick M, Yushkevich N, Schwartz N, Gao Y, Gerig G. User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP. Neuroinformatics. PMID 29946897 DOI: 10.1007/S12021-018-9385-X |
0.361 |
|
| 2017 |
Guo Z, Kashyap S, Sonka M, Oguz I. Machine learning in a graph framework for subcortical segmentation. Proceedings of Spie--the International Society For Optical Engineering. 10133. PMID 28626291 DOI: 10.1117/12.2254874 |
0.381 |
|
| 2016 |
Oguz I, Abramoff MD, Zhang L, Lee K, Zhang EZ, Sonka M. 4D Graph-Based Segmentation for Reproducible and Sensitive Choroid Quantification From Longitudinal OCT Scans. Investigative Ophthalmology & Visual Science. 57: OCT621-OCT630. PMID 27936264 DOI: 10.1167/Iovs.15-18924 |
0.358 |
|
| 2016 |
Lee J, Kim SH, Oguz I, Styner M. Enhanced Cortical Thickness Measurements for Rodent Brains via Lagrangian-based RK4 Streamline Computation. Proceedings of Spie--the International Society For Optical Engineering. 9784. PMID 27065047 DOI: 10.1117/12.2216420 |
0.563 |
|
| 2016 |
Oguz I, Zhang L, Abràmoff MD, Sonka M. Optimal retinal cyst segmentation from OCT images Proceedings of Spie. 9784. DOI: 10.1117/12.2217355 |
0.339 |
|
| 2015 |
Oguz I, Cates J, Datar M, Paniagua B, Fletcher T, Vachet C, Styner M, Whitaker R. Entropy-based particle correspondence for shape populations. International Journal of Computer Assisted Radiology and Surgery. PMID 26646417 DOI: 10.1007/s11548-015-1319-6 |
0.438 |
|
| 2015 |
Oguz I, Styner M, Sanchez M, Shi Y, Sonka M. LOGISMOS-B for Primates: Primate Cortical Surface Reconstruction and Thickness Measurement. Proceedings of Spie--the International Society For Optical Engineering. 9413. PMID 26028802 DOI: 10.1117/12.2082327 |
0.549 |
|
| 2015 |
Johnson CP, Follmer RL, Oguz I, Warren LA, Christensen GE, Fiedorowicz JG, Magnotta VA, Wemmie JA. Brain abnormalities in bipolar disorder detected by quantitative T1ρ mapping. Molecular Psychiatry. 20: 201-6. PMID 25560762 DOI: 10.1038/Mp.2014.157 |
0.373 |
|
| 2015 |
McMurray MS, Oguz I, Rumple AM, Paniagua B, Styner MA, Johns JM. Effects of prenatal cocaine exposure on early postnatal rodent brain structure and diffusion properties. Neurotoxicology and Teratology. 47: 80-8. PMID 25459688 DOI: 10.1016/J.Ntt.2014.11.007 |
0.549 |
|
| 2014 |
Oguz I, Sonka M. LOGISMOS-B: layered optimal graph image segmentation of multiple objects and surfaces for the brain. Ieee Transactions On Medical Imaging. 33: 1220-35. PMID 24760901 DOI: 10.1109/Tmi.2014.2304499 |
0.417 |
|
| 2014 |
Oguz I, Farzinfar M, Matsui J, Budin F, Liu Z, Gerig G, Johnson HJ, Styner M. DTIPrep: quality control of diffusion-weighted images. Frontiers in Neuroinformatics. 8: 4. PMID 24523693 DOI: 10.3389/Fninf.2014.00004 |
0.561 |
|
| 2014 |
Coleman LG, Liu W, Oguz I, Styner M, Crews FT. Adolescent binge ethanol treatment alters adult brain regional volumes, cortical extracellular matrix protein and behavioral flexibility. Pharmacology, Biochemistry, and Behavior. 116: 142-51. PMID 24275185 DOI: 10.1016/J.Pbb.2013.11.021 |
0.503 |
|
| 2014 |
Oguz I, Zhang H, Rumple A, Sonka M. RATS: Rapid Automatic Tissue Segmentation in rodent brain MRI. Journal of Neuroscience Methods. 221: 175-82. PMID 24140478 DOI: 10.1016/J.Jneumeth.2013.09.021 |
0.429 |
|
| 2014 |
Skwerer S, Bullitt E, Huckemann S, Miller E, Oguz I, Owen M, Patrangenaru V, Provan S, Marron JS. Tree-Oriented Analysis of Brain Artery Structure Journal of Mathematical Imaging and Vision. 1-18. DOI: 10.1007/S10851-013-0473-0 |
0.337 |
|
| 2013 |
Grauer M, Reynolds P, Hoogstoel M, Budin F, Styner MA, Oguz I. A midas plugin to enable construction of reproducible web-based image processing pipelines. Frontiers in Neuroinformatics. 7: 46. PMID 24416016 DOI: 10.3389/Fninf.2013.00046 |
0.532 |
|
| 2013 |
Oguz I, Yaxley R, Budin F, Hoogstoel M, Lee J, Maltbie E, Liu W, Crews FT. Comparison of magnetic resonance imaging in live vs. post mortem rat brains. Plos One. 8: e71027. PMID 23967148 DOI: 10.1371/Journal.Pone.0071027 |
0.432 |
|
| 2013 |
Budin F, Hoogstoel M, Reynolds P, Grauer M, O'Leary-Moore SK, Oguz I. Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics. Frontiers in Neuroinformatics. 7: 15. PMID 23964234 DOI: 10.3389/Fninf.2013.00015 |
0.416 |
|
| 2013 |
Parnell SE, Holloway HT, O'Leary-Moore SK, Dehart DB, Paniaqua B, Oguz I, Budin F, Styner MA, Johnson GA, Sulik KK. Magnetic resonance microscopy-based analyses of the neuroanatomical effects of gestational day 9 ethanol exposure in mice. Neurotoxicology and Teratology. 39: 77-83. PMID 23911654 DOI: 10.1016/J.Ntt.2013.07.009 |
0.5 |
|
| 2013 |
Rumple A, McMurray M, Johns J, Lauder J, Makam P, Radcliffe M, Oguz I. 3-dimensional diffusion tensor imaging (DTI) atlas of the rat brain. Plos One. 8: e67334. PMID 23861758 DOI: 10.1371/Journal.Pone.0067334 |
0.423 |
|
| 2013 |
Farzinfar M, Li Y, Verde AR, Oguz I, Gerig G, Styner MA. DTI Quality Control Assessment via Error Estimation From Monte Carlo Simulations. Proceedings of Spie--the International Society For Optical Engineering. 8669: 1667549. PMID 23833547 DOI: 10.1117/12.2006925 |
0.724 |
|
| 2013 |
Farzinfar M, Oguz I, Smith RG, Verde AR, Dietrich C, Gupta A, Escolar ML, Piven J, Pujol S, Vachet C, Gouttard S, Gerig G, Dager S, McKinstry RC, Paterson S, et al. Diffusion imaging quality control via entropy of principal direction distribution. Neuroimage. 82: 1-12. PMID 23684874 DOI: 10.1016/J.Neuroimage.2013.05.022 |
0.727 |
|
| 2013 |
Ehlers CL, Oguz I, Budin F, Wills DN, Crews FT. Peri-adolescent ethanol vapor exposure produces reductions in hippocampal volume that are correlated with deficits in prepulse inhibition of the startle. Alcoholism, Clinical and Experimental Research. 37: 1466-75. PMID 23578102 DOI: 10.1111/Acer.12125 |
0.31 |
|
| 2012 |
Lipinski RJ, Hammond P, O'Leary-Moore SK, Ament JJ, Pecevich SJ, Jiang Y, Budin F, Parnell SE, Suttie M, Godin EA, Everson JL, Dehart DB, Oguz I, Holloway HT, Styner MA, et al. Ethanol-induced face-brain dysmorphology patterns are correlative and exposure-stage dependent. Plos One. 7: e43067. PMID 22937012 DOI: 10.1371/Journal.Pone.0043067 |
0.484 |
|
| 2012 |
Oguz I, McMurray MS, Styner M, Johns JM. The translational role of diffusion tensor image analysis in animal models of developmental pathologies. Developmental Neuroscience. 34: 5-19. PMID 22627095 DOI: 10.1159/000336825 |
0.553 |
|
| 2012 |
Coleman LG, Oguz I, Lee J, Styner M, Crews FT. Postnatal day 7 ethanol treatment causes persistent reductions in adult mouse brain volume and cortical neurons with sex specific effects on neurogenesis. Alcohol (Fayetteville, N.Y.). 46: 603-12. PMID 22572057 DOI: 10.1016/J.Alcohol.2012.01.003 |
0.483 |
|
| 2011 |
Paniagua B, Alhadidi A, Cevidanes L, Styner M, Oguz I. MANDIBULAR ASYMMETRY CHARACTERIZATION USING GENERALIZED TENSOR-BASED MORPHOMETRY. Proceedings / Ieee International Symposium On Biomedical Imaging: From Nano to Macro. Ieee International Symposium On Biomedical Imaging. 2011: 1175-1178. PMID 24443671 DOI: 10.1109/ISBI.2011.5872611 |
0.493 |
|
| 2011 |
Boucharin A, Oguz I, Vachet C, Shi Y, Sanchez M, Styner M. Efficient, Graph-based White Matter Connectivity from Orientation Distribution Functions via Multi-directional Graph Propagation. Proceedings of Spie--the International Society For Optical Engineering. 7962: 79620S. PMID 23066452 DOI: 10.1117/12.878291 |
0.566 |
|
| 2011 |
Cai Y, McMurray MS, Oguz I, Yuan H, Styner MA, Lin W, Johns JM, An H. Use of High Resolution 3D Diffusion Tensor Imaging to Study Brain White Matter Development in Live Neonatal Rats. Frontiers in Psychiatry. 2: 54. PMID 22013426 DOI: 10.3389/Fpsyt.2011.00054 |
0.573 |
|
| 2011 |
Gerig G, Oguz I, Gouttard S, Lee J, An H, Lin W, McMurray M, Grewen K, Johns J, Styner MA. Synergy of image analysis for animal and human neuroimaging supports translational research on drug abuse. Frontiers in Psychiatry. 2: 53. PMID 22013425 DOI: 10.3389/Fpsyt.2011.00053 |
0.576 |
|
| 2011 |
Lee J, Ehlers C, Crews F, Niethammer M, Budin F, Paniagua B, Sulik K, Johns J, Styner M, Oguz I. Automatic cortical thickness analysis on rodent brain. Proceedings of Spie--the International Society For Optical Engineering. 7962: 7962481-79624811. PMID 21909228 DOI: 10.1117/12.878305 |
0.554 |
|
| 2011 |
Oguz I, Lee J, Budin F, Rumple A, McMurray M, Ehlers C, Crews F, Johns J, Styner M. Automatic Skull-stripping of Rat MRI/DTI Scans and Atlas Building. Proceedings of Spie--the International Society For Optical Engineering. 7962: 7962251-7962257. PMID 21909227 DOI: 10.1117/12.878405 |
0.595 |
|
| 2011 |
Paniagua B, Ehlers C, Crews F, Budin F, Larson G, Styner M, Oguz I. Using tensor-based morphometry to detect structural brain abnormalities in rats with adolescent intermittent alcohol exposure Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7965. DOI: 10.1117/12.878389 |
0.551 |
|
| 2011 |
Vachet C, Cody Hazlett H, Niethammer M, Oguz I, Cates J, Whitaker R, Piven J, Styner M. Group-wise automatic mesh-based analysis of cortical thickness Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7962. DOI: 10.1117/12.878300 |
0.558 |
|
| 2010 |
Liu X, Oguz I, Pizer SM, Mageras GS. Shape-correlated Deformation Statistics for Respiratory Motion Prediction in 4D Lung. Proceedings of Spie--the International Society For Optical Engineering. 7625. PMID 24236220 DOI: 10.1117/12.843974 |
0.322 |
|
| 2009 |
Oguz I, Niethammer M, Cates J, Whitaker R, Fletcher T, Vachet C, Styner M. Cortical correspondence with probabilistic fiber connectivity. Information Processing in Medical Imaging : Proceedings of the ... Conference. 21: 651-63. PMID 19694301 DOI: 10.1007/978-3-642-02498-6_54 |
0.482 |
|
| 2006 |
Styner M, Oguz I, Xu S, Brechbühler C, Pantazis D, Levitt JJ, Shenton ME, Gerig G. Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM. The Insight Journal. 242-250. PMID 21941375 |
0.503 |
|
| 2005 |
Styner MA, Oguz I, Smith RG, Cascio C, Jomier M. Corpus callosum subdivision based on a probabilistic model of inter-hemispheric connectivity. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 8: 765-72. PMID 16686029 DOI: 10.1007/11566489_94 |
0.511 |
|
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