| Year |
Citation |
Score |
| 2023 |
Zapletal D, Kubicek K, Svoboda P, Stefl R. Dicer structure and function: conserved and evolving features. Embo Reports. 24: e57215. PMID 37310138 DOI: 10.15252/embr.202357215 |
0.322 |
|
| 2021 |
Malik R, Svoboda P. CRISPR-Induced Expression of N-Terminally Truncated Dicer in Mouse Cells. Genes. 12. PMID 33918028 DOI: 10.3390/genes12040540 |
0.402 |
|
| 2020 |
Svoboda P. Key Mechanistic Principles and Considerations Concerning RNA Interference. Frontiers in Plant Science. 11: 1237. PMID 32903622 DOI: 10.3389/fpls.2020.01237 |
0.321 |
|
| 2020 |
Kataruka S, Modrak M, Kinterova V, Malik R, Zeitler DM, Horvat F, Kanka J, Meister G, Svoboda P. MicroRNA dilution during oocyte growth disables the microRNA pathway in mammalian oocytes. Nucleic Acids Research. PMID 32609824 DOI: 10.1093/Nar/Gkaa543 |
0.322 |
|
| 2020 |
Ganesh S, Horvat F, Drutovic D, Efenberkova M, Pinkas D, Jindrova A, Pasulka J, Iyyappan R, Malik R, Susor A, Vlahovicek K, Solc P, Svoboda P. The most abundant maternal lncRNA Sirena1 acts post-transcriptionally and impacts mitochondrial distribution. Nucleic Acids Research. PMID 31956907 DOI: 10.1093/Nar/Gkz1239 |
0.481 |
|
| 2019 |
Taborska E, Pasulka J, Malik R, Horvat F, Jenickova I, Jelić Matošević Z, Svoboda P. Restricted and non-essential redundancy of RNAi and piRNA pathways in mouse oocytes. Plos Genetics. 15: e1008261. PMID 31860668 DOI: 10.1371/Journal.Pgen.1008261 |
0.453 |
|
| 2019 |
Demeter T, Vaskovicova M, Malik R, Horvat F, Pasulka J, Svobodova E, Flemr M, Svoboda P. Main constraints for RNAi induced by expressed long dsRNA in mouse cells. Life Science Alliance. 2. PMID 30808654 DOI: 10.26508/lsa.201800289 |
0.307 |
|
| 2018 |
Horvat F, Fulka H, Jankele R, Malik R, Jun M, Solcova K, Sedlacek R, Vlahovicek K, Schultz RM, Svoboda P. Role of in maternal mRNA turnover. Life Science Alliance. 1: e201800084. PMID 30456367 DOI: 10.26508/lsa.201800084 |
0.538 |
|
| 2018 |
Cechova K, Hlouskova M, Javorkova E, Roubalova L, Ujcikova H, Holan V, Svoboda P. Up-regulation of μ-, δ- and κ-opioid receptors in concanavalin A-stimulated rat spleen lymphocytes. Journal of Neuroimmunology. 321: 12-23. PMID 29957382 DOI: 10.1016/J.Jneuroim.2018.05.008 |
0.308 |
|
| 2018 |
Schultz RM, Stein P, Svoboda P. The oocyte-to-embryo transition in mouse: past, present, and future. Biology of Reproduction. PMID 29462259 DOI: 10.1093/Biolre/Ioy013 |
0.567 |
|
| 2017 |
Svoboda P. Mammalian zygotic genome activation. Seminars in Cell & Developmental Biology. PMID 29233752 DOI: 10.1016/J.Semcdb.2017.12.006 |
0.42 |
|
| 2017 |
Svoboda P. Long and small noncoding RNAs during oocyte-to-embryo transition in mammals. Biochemical Society Transactions. PMID 28939692 DOI: 10.1042/Bst20170033 |
0.49 |
|
| 2017 |
Franke V, Ganesh S, Karlic R, Malik R, Pasulka J, Horvat F, Kuzman M, Fulka H, Cernohorska M, Urbanova J, Svobodova E, Ma J, Suzuki Y, Aoki F, Schultz RM, ... ... Svoboda P, et al. Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes. Genome Research. PMID 28522611 DOI: 10.1101/Gr.216150.116 |
0.575 |
|
| 2017 |
Karlic R, Ganesh S, Franke V, Svobodova E, Urbanova J, Suzuki Y, Aoki F, Vlahovicek K, Svoboda P. Long non-coding RNA exchange during the oocyte-to-embryo transition in mice. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 28087610 DOI: 10.1093/Dnares/Dsw058 |
0.485 |
|
| 2017 |
Svoboda P, Fulka H, Malik R. Clearance of Parental Products. Advances in Experimental Medicine and Biology. 953: 489-535. PMID 27975278 DOI: 10.1007/978-3-319-46095-6_10 |
0.32 |
|
| 2016 |
Svobodova E, Kubikova J, Svoboda P. Production of small RNAs by mammalian Dicer. Pflugers Archiv : European Journal of Physiology. PMID 27048428 DOI: 10.1007/S00424-016-1817-6 |
0.42 |
|
| 2016 |
Ganesh S, Svoboda P. Retrotransposon-associated long non-coding RNAs in mice and men. Pflugers Archiv : European Journal of Physiology. PMID 27044413 DOI: 10.1007/S00424-016-1818-5 |
0.366 |
|
| 2015 |
Svoboda P, Franke V, Schultz RM. Sculpting the Transcriptome During the Oocyte-to-Embryo Transition in Mouse. Current Topics in Developmental Biology. 113: 305-49. PMID 26358877 DOI: 10.1016/Bs.Ctdb.2015.06.004 |
0.649 |
|
| 2015 |
Abe K, Yamamoto R, Franke V, Cao M, Suzuki Y, Suzuki MG, Vlahovicek K, Svoboda P, Schultz RM, Aoki F. The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3' processing. The Embo Journal. 34: 1523-37. PMID 25896510 DOI: 10.15252/Embj.201490648 |
0.606 |
|
| 2015 |
Svoboda P, Franke V, Schultz RM. Sculpting the Transcriptome During the Oocyte-to-Embryo Transition in Mouse Current Topics in Developmental Biology. DOI: 10.1016/bs.ctdb.2015.06.004 |
0.46 |
|
| 2014 |
Abranches E, Guedes AM, Moravec M, Maamar H, Svoboda P, Raj A, Henrique D. Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency. Development (Cambridge, England). 141: 2770-9. PMID 25005472 DOI: 10.1242/Dev.108910 |
0.309 |
|
| 2014 |
Jankele R, Svoboda P. TAL effectors: tools for DNA targeting. Briefings in Functional Genomics. 13: 409-19. PMID 24907364 DOI: 10.1093/Bfgp/Elu013 |
0.32 |
|
| 2014 |
Svoboda P. Renaissance of mammalian endogenous RNAi. Febs Letters. 588: 2550-6. PMID 24873877 DOI: 10.1016/J.Febslet.2014.05.030 |
0.458 |
|
| 2014 |
Flemr M, Moravec M, Libova V, Sedlacek R, Svoboda P. Lin28a is dormant, functional, and dispensable during mouse oocyte-to-embryo transition. Biology of Reproduction. 90: 131. PMID 24829024 DOI: 10.1095/Biolreprod.114.118703 |
0.493 |
|
| 2014 |
Chalupnikova K, Solc P, Sulimenko V, Sedlacek R, Svoboda P. An oocyte-specific ELAVL2 isoform is a translational repressor ablated from meiotically competent antral oocytes. Cell Cycle (Georgetown, Tex.). 13: 1187-200. PMID 24553115 DOI: 10.4161/Cc.28107 |
0.402 |
|
| 2014 |
Nejepinska J, Malik R, Wagner S, Svoboda P. Reporters transiently transfected into mammalian cells are highly sensitive to translational repression induced by dsRNA expression. Plos One. 9: e87517. PMID 24475301 DOI: 10.1371/Journal.Pone.0087517 |
0.45 |
|
| 2014 |
Podolska K, Sedlak D, Bartunek P, Svoboda P. Fluorescence-based high-throughput screening of dicer cleavage activity. Journal of Biomolecular Screening. 19: 417-26. PMID 23945873 DOI: 10.1177/1087057113497400 |
0.381 |
|
| 2013 |
Flemr M, Malik R, Franke V, Nejepinska J, Sedlacek R, Vlahovicek K, Svoboda P. A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes. Cell. 155: 807-16. PMID 24209619 DOI: 10.1016/J.Cell.2013.10.001 |
0.439 |
|
| 2013 |
Stein P, Svoboda P, Schultz RM. RNAi-based methods for gene silencing in mouse oocytes. Methods in Molecular Biology (Clifton, N.J.). 957: 135-51. PMID 23138949 DOI: 10.1007/978-1-62703-191-2_9 |
0.616 |
|
| 2013 |
Ma J, Flemr M, Strnad H, Svoboda P, Schultz RM. Maternally recruited DCP1A and DCP2 contribute to messenger RNA degradation during oocyte maturation and genome activation in mouse. Biology of Reproduction. 88: 11. PMID 23136299 DOI: 10.1095/Biolreprod.112.105312 |
0.601 |
|
| 2013 |
Chalupnikova K, Nejepinska J, Svoboda P. Production and application of long dsRNA in mammalian cells. Methods in Molecular Biology (Clifton, N.J.). 942: 291-314. PMID 23027058 DOI: 10.1007/978-1-62703-119-6_16 |
0.461 |
|
| 2012 |
Malik R, Svoboda P. Transgenic RNAi in mouse oocytes: the first decade. Animal Reproduction Science. 134: 64-8. PMID 22921723 DOI: 10.1016/J.Anireprosci.2012.08.012 |
0.494 |
|
| 2012 |
Nejepinska J, Malik R, Moravec M, Svoboda P. Deep sequencing reveals complex spurious transcription from transiently transfected plasmids. Plos One. 7: e43283. PMID 22916237 DOI: 10.1371/Journal.Pone.0043283 |
0.396 |
|
| 2012 |
Ohrt T, Muetze J, Svoboda P, Schwille P. Intracellular localization and routing of miRNA and RNAi pathway components. Current Topics in Medicinal Chemistry. 12: 79-88. PMID 22196276 DOI: 10.2174/156802612798919132 |
0.446 |
|
| 2012 |
Nejepinska J, Flemr M, Svoboda P. Control of the interferon response in RNAi experiments. Methods in Molecular Biology (Clifton, N.J.). 820: 133-61. PMID 22131030 DOI: 10.1007/978-1-61779-439-1_9 |
0.338 |
|
| 2012 |
Nejepinska J, Malik R, Filkowski J, Flemr M, Filipowicz W, Svoboda P. dsRNA expression in the mouse elicits RNAi in oocytes and low adenosine deamination in somatic cells. Nucleic Acids Research. 40: 399-413. PMID 21908396 DOI: 10.1093/Nar/Gkr702 |
0.492 |
|
| 2011 |
Podolska K, Svoboda P. Targeting genes in living mammals by RNA interference. Briefings in Functional Genomics. 10: 238-47. PMID 21737416 DOI: 10.1093/Bfgp/Elr013 |
0.478 |
|
| 2011 |
Flemr M, Svoboda P. Ribonucleoprotein localization in mouse oocytes. Methods (San Diego, Calif.). 53: 136-41. PMID 20708690 DOI: 10.1016/J.Ymeth.2010.08.005 |
0.44 |
|
| 2010 |
Svoboda P. Why mouse oocytes and early embryos ignore miRNAs? Rna Biology. 7: 559-63. PMID 21037419 DOI: 10.4161/Rna.7.5.12940 |
0.425 |
|
| 2010 |
Sarnova L, Malik R, Sedlacek R, Svoboda P. Shortcomings of short hairpin RNA-based transgenic RNA interference in mouse oocytes. Journal of Negative Results in Biomedicine. 9: 8. PMID 20939886 DOI: 10.1186/1477-5751-9-8 |
0.46 |
|
| 2010 |
Sinkkonen L, Hugenschmidt T, Filipowicz W, Svoboda P. Dicer is associated with ribosomal DNA chromatin in mammalian cells. Plos One. 5: e12175. PMID 20730047 DOI: 10.1371/Journal.Pone.0012175 |
0.472 |
|
| 2010 |
Svoboda P, Flemr M. The role of miRNAs and endogenous siRNAs in maternal-to-zygotic reprogramming and the establishment of pluripotency. Embo Reports. 11: 590-7. PMID 20651740 DOI: 10.1038/Embor.2010.102 |
0.434 |
|
| 2010 |
Ma J, Flemr M, Stein P, Berninger P, Malik R, Zavolan M, Svoboda P, Schultz RM. MicroRNA Activity Is Suppressed in Mouse Oocytes Current Biology. 20: 265-270. PMID 20116252 DOI: 10.1016/J.Cub.2009.12.042 |
0.565 |
|
| 2010 |
Flemr M, Ma J, Schultz RM, Svoboda P. P-body loss is concomitant with formation of a messenger RNA storage domain in mouse oocytes Biology of Reproduction. 82: 1008-1017. PMID 20075394 DOI: 10.1095/Biolreprod.109.082057 |
0.591 |
|
| 2010 |
Ma J, Flemr M, Medvedev S, Svoboda P, Schultz RM. Role of Maturation-Associated Recruitment of Dcp1a and Dcp2 in Degradation of Maternal mRNA. Biology of Reproduction. 83: 72-72. DOI: 10.1093/Biolreprod/83.S1.72 |
0.513 |
|
| 2009 |
Svoboda P, Stein P. RNAi experiments in mouse oocytes and early embryos. Cold Spring Harbor Protocols. 2009: pdb.top56. PMID 20147032 DOI: 10.1101/Pdb.Top56 |
0.471 |
|
| 2009 |
Svoboda P. Cloning a transgene for transgenic RNAi in mouse oocytes. Cold Spring Harbor Protocols. 2009: pdb.prot5134. PMID 20147029 DOI: 10.1101/Pdb.Prot5134 |
0.381 |
|
| 2009 |
Svoboda P. Preparation of dsRNA for microinjection experiments in mouse. Cold Spring Harbor Protocols. 2009: pdb.prot5131. PMID 20147026 DOI: 10.1101/Pdb.Prot5131 |
0.453 |
|
| 2009 |
Svoboda P. Cloning and sequencing an inverted repeat. Cold Spring Harbor Protocols. 2009: pdb.ip64. PMID 20147011 DOI: 10.1101/Pdb.Ip64 |
0.309 |
|
| 2009 |
Svoboda P. Choosing the sequence of dsRNA for RNAi in mouse. Cold Spring Harbor Protocols. 2009: pdb.ip63. PMID 20147010 DOI: 10.1101/Pdb.Ip63 |
0.414 |
|
| 2009 |
Ma J, Flemr M, Buffone M, Stein P, Svoboda P, Schultz R. Cytoplasmic Processing Body (P-body) Formation and miRNA Function in Mouse Oocytes. Biology of Reproduction. 81: 27-27. DOI: 10.1093/Biolreprod/81.S1.27 |
0.473 |
|
| 2008 |
Kutter C, Svoboda P. miRNA, siRNA, piRNA: Knowns of the unknown. Rna Biology. 5: 181-8. PMID 19182524 DOI: 10.4161/Rna.7227 |
0.473 |
|
| 2008 |
Sinkkonen L, Hugenschmidt T, Berninger P, Gaidatzis D, Mohn F, Artus-Revel CG, Zavolan M, Svoboda P, Filipowicz W. MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells. Nature Structural & Molecular Biology. 15: 259-67. PMID 18311153 DOI: 10.1038/Nsmb.1391 |
0.311 |
|
| 2008 |
Svoboda P. RNA silencing in mammalian oocytes and early embryos. Current Topics in Microbiology and Immunology. 320: 225-56. PMID 18268847 DOI: 10.1007/978-3-540-75157-1_11 |
0.473 |
|
| 2006 |
Stein P, Svoboda P. RNA Isolation and RT-PCR from dsRNA-Treated Mouse Oocytes and Early Embryos. Csh Protocols. 2006. PMID 22485881 DOI: 10.1101/Pdb.Prot4513 |
0.438 |
|
| 2006 |
Stein P, Svoboda P. Microinjection of dsRNA into Mouse Oocytes and Early Embryos. Csh Protocols. 2006. PMID 22485879 DOI: 10.1101/Pdb.Prot4511 |
0.36 |
|
| 2006 |
Stein P, Svoboda P. Collection of Early Mouse Embryos for RNAi. Csh Protocols. 2006. PMID 22485878 DOI: 10.1101/Pdb.Prot4510 |
0.357 |
|
| 2006 |
Stein P, Svoboda P. Collection of Mouse Oocytes for RNAi. Csh Protocols. 2006. PMID 22485877 DOI: 10.1101/Pdb.Prot4509 |
0.383 |
|
| 2006 |
Stein P, Svoboda P. Preparation of dsRNA Molecules for RNAi in Mouse Oocytes and Early Embryos. Csh Protocols. 2006. PMID 22485876 DOI: 10.1101/Pdb.Prot4508 |
0.35 |
|
| 2006 |
Schmitter D, Filkowski J, Sewer A, Pillai RS, Oakeley EJ, Zavolan M, Svoboda P, Filipowicz W. Effects of Dicer and Argonaute down-regulation on mRNA levels in human HEK293 cells. Nucleic Acids Research. 34: 4801-15. PMID 16971455 DOI: 10.1093/Nar/Gkl646 |
0.443 |
|
| 2006 |
Horman SR, Svoboda P, Luning Prak ET. The potential regulation of L1 mobility by RNA interference. Journal of Biomedicine & Biotechnology. 2006: 32713. PMID 16877813 DOI: 10.1155/Jbb/2006/32713 |
0.308 |
|
| 2006 |
Bultman SJ, Gebuhr TC, Pan H, Svoboda P, Schultz RM, Magnuson T. Maternal BRG1 regulates zygotic genome activation in the mouse. Genes & Development. 20: 1744-54. PMID 16818606 DOI: 10.1101/Gad.1435106 |
0.623 |
|
| 2006 |
Puschendorf M, Stein P, Oakeley EJ, Schultz RM, Peters AH, Svoboda P. Abundant transcripts from retrotransposons are unstable in fully grown mouse oocytes. Biochemical and Biophysical Research Communications. 347: 36-43. PMID 16815300 DOI: 10.1016/J.Bbrc.2006.06.106 |
0.59 |
|
| 2006 |
Svoboda P, Cara AD. Hairpin RNA: a secondary structure of primary importance Cellular and Molecular Life Sciences. 63: 901-908. PMID 16568238 DOI: 10.1007/S00018-005-5558-5 |
0.442 |
|
| 2004 |
Gangloff YG, Mueller M, Dann SG, Svoboda P, Sticker M, Spetz JF, Um SH, Brown EJ, Cereghini S, Thomas G, Kozma SC. Disruption of the mouse mTOR gene leads to early postimplantation lethality and prohibits embryonic stem cell development. Molecular and Cellular Biology. 24: 9508-16. PMID 15485918 DOI: 10.1128/Mcb.24.21.9508-9516.2004 |
0.354 |
|
| 2004 |
Svoboda P, Stein P, Filipowicz W, Schultz RM. Lack of homologous sequence-specific DNA methylation in response to stable dsRNA expression in mouse oocytes. Nucleic Acids Research. 32: 3601-6. PMID 15247344 DOI: 10.1093/Nar/Gkh697 |
0.582 |
|
| 2004 |
Svoboda P. Long dsRNA and silent genes strike back:RNAi in mouse oocytes and early embryos Cytogenetic and Genome Research. 105: 422-434. PMID 15237230 DOI: 10.1159/000078215 |
0.493 |
|
| 2004 |
Svoboda P, Stein P, Anger M, Bernstein E, Hannon GJ, Schultz RM. RNAi and expression of retrotransposons MuERV-L and IAP in preimplantation mouse embryos. Developmental Biology. 269: 276-85. PMID 15081373 DOI: 10.1016/J.Ydbio.2004.01.028 |
0.584 |
|
| 2004 |
Fedoriw AM, Stein P, Svoboda P, Schultz RM, Bartolomei MS. Transgenic RNAi reveals essential function for CTCF in H19 gene imprinting. Science (New York, N.Y.). 303: 238-40. PMID 14716017 DOI: 10.1126/Science.1090934 |
0.536 |
|
| 2003 |
Stein P, Svoboda P, Schultz RM. Transgenic RNAi in mouse oocytes: a simple and fast approach to study gene function. Developmental Biology. 256: 187-93. PMID 12654301 DOI: 10.1016/S0012-1606(02)00122-7 |
0.615 |
|
| 2003 |
Stein P, Svoboda P, Anger M, Schultz RM. RNAi: mammalian oocytes do it without RNA-dependent RNA polymerase. Rna (New York, N.Y.). 9: 187-92. PMID 12554861 DOI: 10.1261/Rna.2860603 |
0.619 |
|
| 2002 |
Stein P, Svoboda P, Stumpo DJ, Blackshear PJ, Lombard DB, Johnson B, Schultz RM. Analysis of the role of RecQ helicases in RNAi in mammals. Biochemical and Biophysical Research Communications. 291: 1119-22. PMID 11883931 DOI: 10.1006/Bbrc.2002.6578 |
0.606 |
|
| 2001 |
Svoboda P, Stein P, Schultz RM. RNAi in mouse oocytes and preimplantation embryos: effectiveness of hairpin dsRNA. Biochemical and Biophysical Research Communications. 287: 1099-104. PMID 11587535 DOI: 10.1006/Bbrc.2001.5707 |
0.625 |
|
| 2001 |
Ma J, Svoboda P, Schultz RM, Stein P. Regulation of zygotic gene activation in the preimplantation mouse embryo: global activation and repression of gene expression. Biology of Reproduction. 64: 1713-21. PMID 11369600 DOI: 10.1095/Biolreprod64.6.1713 |
0.57 |
|
| 2000 |
Svoboda P, Stein P, Hayashi H, Schultz RM. Selective reduction of dormant maternal mRNAs in mouse oocytes by RNA interference. Development (Cambridge, England). 127: 4147-56. PMID 10976047 |
0.546 |
|
| 1999 |
Schultz RM, Davis W, Stein P, Svoboda P. Reprogramming of gene expression during preimplantation development. The Journal of Experimental Zoology. 285: 276-82. PMID 10497327 DOI: 10.1002/(Sici)1097-010X(19991015)285:3<276::Aid-Jez11>3.0.Co;2-K |
0.549 |
|
| 1999 |
Zavadil J, Svoboda P, Liang H, Kottickal LV, Nagarajan L. An antisense transcript to SMAD5 expressed in fetal and tumor tissues Biochemical and Biophysical Research Communications. 255: 668-672. PMID 10049768 DOI: 10.1006/Bbrc.1999.0256 |
0.329 |
|
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