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John M. Finke, Ph.D. - Publications

Affiliations: 
2001 University of California, San Diego, La Jolla, CA 
Area:
protein structure, dynamics and folding; 2, 3 and 4D NMR spectroscopy; PCR; equilibrium and kinetic-fluorescence, absorbance and circular dichroism spectroscopies
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Dahlstrom TJ, Capraro DT, Jennings PA, Finke JM. Knotting Optimization and Folding Pathways of a Go-Model with a Deep Knot. The Journal of Physical Chemistry. B. 126: 10221-10236. PMID 36424347 DOI: 10.1021/acs.jpcb.2c05588  0.677
2015 Crisostomo AC, Dang L, Digambaranath JL, Klaver AC, Loeffler DA, Payne JJ, Smith LM, Yokom AL, Finke JM. Biophysical characterization data on Aβ soluble oligomers produced through a method enabling prolonged oligomer stability and biological buffer conditions. Data in Brief. 4: 650-8. PMID 26401521 DOI: 10.1016/J.Dib.2015.07.034  0.388
2015 Crisostomo AC, Dang L, Digambaranath JL, Klaver AC, Loeffler DA, Payne JJ, Smith LM, Yokom AL, Finke JM. Kinetic analysis of IgG antibodies to beta-amyloid oligomers with surface plasmon resonance. Analytical Biochemistry. 481: 43-54. PMID 25921794 DOI: 10.1016/J.Ab.2015.03.032  0.328
2013 Quintyn RS, Zhou M, Dagan S, Finke J, Wysocki VH. Ligand binding and unfolding of tryptophan synthase revealed by ion mobility-tandem mass spectrometry employing collision and surface induced dissociation International Journal For Ion Mobility Spectrometry. 16: 133-143. DOI: 10.1007/S12127-013-0126-4  0.358
2011 Digambaranath JL, Campbell TV, Chung A, McPhail MJ, Stevenson KE, Zohdy MA, Finke JM. An accurate model of polyglutamine. Proteins. 79: 1427-40. PMID 21337625 DOI: 10.1002/Prot.22970  0.409
2011 Klaver AC, Patrias LM, Finke JM, Loeffler DA. Specificity and sensitivity of the Abeta oligomer ELISA. Journal of Neuroscience Methods. 195: 249-54. PMID 21163305 DOI: 10.1016/J.Jneumeth.2010.12.001  0.313
2010 Digambaranath JL, Dang L, Dembinska M, Vasyluk A, Finke JM. Conformations within soluble oligomers and insoluble aggregates revealed by resonance energy transfer. Biopolymers. 93: 299-317. PMID 19927295 DOI: 10.1002/Bip.21324  0.445
2010 Klaver AC, Finke JM, Digambaranath J, Balasubramaniam M, Loeffler DA. Antibody concentrations to Abeta1-42 monomer and soluble oligomers in untreated and antibody-antigen-dissociated intravenous immunoglobulin preparations. International Immunopharmacology. 10: 115-9. PMID 19840873 DOI: 10.1016/J.Intimp.2009.10.005  0.3
2009 Digambaranath JL, Block BP, Campbell T, Dang L, Dembinska M, Williams KK, Finke JM. Amyloid Peptide Conformations In Soluble Oligomers Biophysical Journal. 96: 88a. DOI: 10.1016/J.Bpj.2008.12.359  0.436
2008 Andrews BT, Gosavi S, Finke JM, Onuchic JN, Jennings PA. The dual-basin landscape in GFP folding. Proceedings of the National Academy of Sciences of the United States of America. 105: 12283-8. PMID 18713871 DOI: 10.1073/Pnas.0804039105  0.677
2008 Rao MK, Chapman TR, Finke JM. Crystallographic B-factors highlight energetic frustration in aldolase folding. The Journal of Physical Chemistry. B. 112: 10417-31. PMID 18671365 DOI: 10.1021/Jp7117295  0.411
2007 Gu Z, Rao MK, Forsyth WR, Finke JM, Matthews CR. Structural analysis of kinetic folding intermediates for a TIM barrel protein, indole-3-glycerol phosphate synthase, by hydrogen exchange mass spectrometry and Gō model simulation. Journal of Molecular Biology. 374: 528-46. PMID 17942114 DOI: 10.1016/J.Jmb.2007.09.024  0.645
2007 Patel B, Finke JM. Folding and unfolding of gammaTIM monomers and dimers. Biophysical Journal. 93: 2457-71. PMID 17545246 DOI: 10.1529/Biophysj.107.108068  0.468
2007 Finke JM, Jennings PA, Lee JC, Onuchic JN, Winkler JR. Equilibrium unfolding of the poly(glutamic acid)20 helix. Biopolymers. 86: 193-211. PMID 17370320 DOI: 10.1002/Bip.20719  0.526
2005 Finke JM, Onuchic JN. Equilibrium and kinetic folding pathways of a TIM barrel with a funneled energy landscape. Biophysical Journal. 89: 488-505. PMID 15833999 DOI: 10.1529/Biophysj.105.059147  0.507
2005 Roy M, Chavez LL, Finke JM, Heidary DK, Onuchic JN, Jennings PA. The native energy landscape for interleukin-1beta. Modulation of the population ensemble through native-state topology. Journal of Molecular Biology. 348: 335-47. PMID 15811372 DOI: 10.1016/J.Jmb.2005.02.059  0.676
2004 Finke JM, Cheung MS, Onuchic JN. A structural model of polyglutamine determined from a host-guest method combining experiments and landscape theory. Biophysical Journal. 87: 1900-18. PMID 15345567 DOI: 10.1529/Biophysj.104.041533  0.425
2003 Cheung MS, Finke JM, Callahan B, Onuchic JN. Exploring the interplay between topology and secondary structural formation in the protein folding problem Journal of Physical Chemistry B. 107: 11193-11200. DOI: 10.1021/Jp034441R  0.432
2002 Finke JM, Jennings PA. Interleukin-1 beta folding between pH 5 and 7: experimental evidence for three-state folding behavior and robust transition state positions late in folding. Biochemistry. 41: 15056-67. PMID 12475255 DOI: 10.1021/Bi026197K  0.595
2001 Finke JM, Jennings PA. Early aggregated States in the folding of interleukin-1β. Journal of Biological Physics. 27: 119-31. PMID 23345738 DOI: 10.1023/A:1013178505077  0.562
2000 Finke JM, Gross LA, Ho HM, Sept D, Zimm BH, Jennings PA. Commitment to folded and aggregated states occurs late in interleukin-1 beta folding. Biochemistry. 39: 15633-42. PMID 11112552 DOI: 10.1021/Bi001307D  0.619
2000 Finke JM, Roy M, Zimm BH, Jennings PA. Aggregation events occur prior to stable intermediate formation during refolding of interleukin 1beta. Biochemistry. 39: 575-83. PMID 10642182 DOI: 10.1021/Bi991518M  0.636
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