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Dmitry A. Kondrashov, Ph.D. - Publications

Affiliations: 
2005 University of Arizona, Tucson, AZ 
Area:
Protein Structure, Function and Inhibition
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Kondrashov DA, Kondrashov FA. Topological features of rugged fitness landscapes in sequence space. Trends in Genetics : Tig. 31: 24-33. PMID 25438718 DOI: 10.1016/J.Tig.2014.09.009  0.327
2011 Kondrashov DA. Using normal mode analysis in teaching mathematical modeling to biology students Mathematical Modelling of Natural Phenomena. 6: 278-294. DOI: 10.1051/Mmnp/20116615  0.305
2008 Bitto E, Bingman CA, Bittova L, Kondrashov DA, Bannen RM, Fox BG, Markley JL, Phillips GN. Structure of human J-type co-chaperone HscB reveals a tetracysteine metal-binding domain. The Journal of Biological Chemistry. 283: 30184-92. PMID 18713742 DOI: 10.1074/Jbc.M804746200  0.364
2008 Kondrashov DA, Zhang W, Aranda R, Stec B, Phillips GN. Sampling of the native conformational ensemble of myoglobin via structures in different crystalline environments. Proteins. 70: 353-62. PMID 17680690 DOI: 10.1002/Prot.21499  0.399
2008 Bitto E, Bingman CA, Kondrashov DA, McCoy JG, Bannen RM, Wesenberg GE, Phillips GN. Structure and dynamics of gamma-SNAP: insight into flexibility of proteins from the SNAP family. Proteins. 70: 93-104. PMID 17634982 DOI: 10.1002/Prot.21468  0.407
2007 Levin EJ, Kondrashov DA, Wesenberg GE, Phillips GN. Ensemble refinement of protein crystal structures: validation and application. Structure (London, England : 1993). 15: 1040-52. PMID 17850744 DOI: 10.1016/J.Str.2007.06.019  0.431
2007 Kondrashov DA, Montfort WR. Nonequilibrium dynamics simulations of nitric oxide release: comparative study of nitrophorin and myoglobin. The Journal of Physical Chemistry. B. 111: 9244-52. PMID 17622170 DOI: 10.1021/Jp071136N  0.548
2007 Kondrashov DA, Van Wynsberghe AW, Bannen RM, Cui Q, Phillips GN. Protein structural variation in computational models and crystallographic data. Structure (London, England : 1993). 15: 169-77. PMID 17292835 DOI: 10.1016/J.Str.2006.12.006  0.386
2007 McCoy JG, Bitto E, Bingman CA, Wesenberg GE, Bannen RM, Kondrashov DA, Phillips GN. Structure and dynamics of UDP-glucose pyrophosphorylase from Arabidopsis thaliana with bound UDP-glucose and UTP. Journal of Molecular Biology. 366: 830-41. PMID 17178129 DOI: 10.1016/J.Jmb.2006.11.059  0.377
2006 Kondrashov DA, Cui Q, Phillips GN. Optimization and evaluation of a coarse-grained model of protein motion using x-ray crystal data. Biophysical Journal. 91: 2760-7. PMID 16891367 DOI: 10.1529/Biophysj.106.085894  0.369
2005 Kondrashov DA, Phillips GN. Molecular mastication mechanics. Structure (London, England : 1993). 13: 836-7. PMID 15939014 DOI: 10.1016/J.Str.2005.05.004  0.371
2004 Kondrashov DA, Roberts SA, Weichsel A, Montfort WR. Protein functional cycle viewed at atomic resolution: conformational change and mobility in nitrophorin 4 as a function of pH and NO binding. Biochemistry. 43: 13637-47. PMID 15504026 DOI: 10.1021/Bi0483155  0.556
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