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Jeffrey A. Chao, Ph.D. - Publications

Affiliations: 
2005 Scripps Research Institute, La Jolla, La Jolla, CA, United States 
Area:
structural role of RNA
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Hochstoeger T, Papasaikas P, Piskadlo E, Chao JA. Distinct roles of LARP1 and 4EBP1/2 in regulating translation and stability of 5'TOP mRNAs. Science Advances. 10: eadi7830. PMID 38363833 DOI: 10.1126/sciadv.adi7830  0.427
2024 Ngo LH, Bert AG, Dredge BK, Williams T, Murphy V, Li W, Hamilton WB, Carey KT, Toubia J, Pillman KA, Liu D, Desogus J, Chao JA, Deans AJ, Goodall GJ, et al. Nuclear export of circular RNA. Nature. PMID 38355801 DOI: 10.1038/s41586-024-07060-5  0.51
2023 Eichenberger BT, Griesbach E, Mitchell J, Chao JA. Following the Birth, Life, and Death of mRNAs in Single Cells. Annual Review of Cell and Developmental Biology. 39: 253-275. PMID 37843928 DOI: 10.1146/annurev-cellbio-022723-024045  0.435
2023 Hochstoeger T, Chao JA. Towards a molecular understanding of the 5'TOP motif in regulating translation of ribosomal mRNAs. Seminars in Cell & Developmental Biology. PMID 37316417 DOI: 10.1016/j.semcdb.2023.06.001  0.365
2023 Dave P, Roth G, Griesbach E, Mateju D, Hochstoeger T, Chao JA. Single-molecule imaging reveals translation-dependent destabilization of mRNAs. Molecular Cell. PMID 36731471 DOI: 10.1016/j.molcel.2023.01.013  0.389
2022 Piskadlo E, Eichenberger BT, Giorgetti L, Chao JA. Design, Labeling, and Application of Probes for RNA smFISH. Methods in Molecular Biology (Clifton, N.J.). 2537: 173-183. PMID 35895264 DOI: 10.1007/978-1-0716-2521-7_10  0.397
2022 Gómez-Puerta S, Ferrero R, Hochstoeger T, Zubiri I, Chao J, Aragón T, Voigt F. Live imaging of the co-translational recruitment of XBP1 mRNA to the ER and its processing by diffuse, non-polarized IRE1α. Elife. 11. PMID 35730412 DOI: 10.7554/eLife.75580  0.321
2022 Zinnall U, Milek M, Minia I, Vieira-Vieira CH, Müller S, Mastrobuoni G, Hazapis OG, Del Giudice S, Schwefel D, Bley N, Voigt F, Chao JA, Kempa S, Hüttelmaier S, Selbach M, et al. HDLBP binds ER-targeted mRNAs by multivalent interactions to promote protein synthesis of transmembrane and secreted proteins. Nature Communications. 13: 2727. PMID 35585045 DOI: 10.1038/s41467-022-30322-7  0.395
2021 Duchon A, Santos S, Chen J, Brown M, Nikolaitchik OA, Tai S, Chao JA, Freed EO, Pathak VK, Hu WS. Plasma Membrane Anchoring and Gag:Gag Multimerization on Viral RNA Are Critical Properties of HIV-1 Gag Required To Mediate Efficient Genome Packaging. Mbio. e0325421. PMID 34872357 DOI: 10.1128/mbio.03254-21  0.414
2021 Mitchell J, Chao JA. Single-molecule mRNA and translation imaging in neurons. Biochemical Society Transactions. PMID 34495323 DOI: 10.1042/BST20210313  0.337
2020 Mateju D, Eichenberger B, Voigt F, Eglinger J, Roth G, Chao JA. Single-Molecule Imaging Reveals Translation of mRNAs Localized to Stress Granules. Cell. PMID 33308477 DOI: 10.1016/j.cell.2020.11.010  0.451
2020 Bhaskar V, Jia M, Chao JA. A Single-Molecule RNA Mobility Assay to Identify Proteins that Link RNAs to Molecular Motors. Methods in Molecular Biology (Clifton, N.J.). 2166: 269-282. PMID 32710415 DOI: 10.1007/978-1-0716-0712-1_16  0.545
2020 Dave P, Chao JA. Insights into mRNA degradation from single-molecule imaging in living cells. Current Opinion in Structural Biology. 65: 89-95. PMID 32659634 DOI: 10.1016/J.Sbi.2020.06.003  0.53
2020 Bhaskar V, Graff-Meyer A, Schenk AD, Cavadini S, von Loeffelholz O, Natchiar SK, Artus-Revel CG, Hotz HR, Bretones G, Klaholz BP, Chao JA. Dynamics of uS19 C-Terminal Tail during the Translation Elongation Cycle in Human Ribosomes. Cell Reports. 31: 107473. PMID 32268098 DOI: 10.1016/J.Celrep.2020.03.037  0.399
2019 Ross NT, Lohmann F, Carbonneau S, Fazal A, Weihofen WA, Gleim S, Salcius M, Sigoillot F, Henault M, Carl SH, Rodríguez-Molina JB, Miller HR, Brittain SM, Murphy J, Zambrowski M, ... ... Chao JA, et al. CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing's sarcoma. Nature Chemical Biology. PMID 31819276 DOI: 10.1038/S41589-019-0424-1  0.449
2019 Biswas J, Patel VL, Bhaskar V, Chao JA, Singer RH, Eliscovich C. The structural basis for RNA selectivity by the IMP family of RNA-binding proteins. Nature Communications. 10: 4440. PMID 31570709 DOI: 10.1038/S41467-019-12193-7  0.582
2019 Voigt F, Eglinger J, Chao JA. Quantification of mRNA Turnover in Living Cells: A Pipeline for TREAT Data Analysis. Methods in Molecular Biology (Clifton, N.J.). 2038: 75-88. PMID 31407279 DOI: 10.1007/978-1-4939-9674-2_6  0.564
2019 Voigt F, Gerbracht JV, Boehm V, Horvathova I, Eglinger J, Chao JA, Gehring NH. Detection and quantification of RNA decay intermediates using XRN1-resistant reporter transcripts. Nature Protocols. PMID 31019309 DOI: 10.1038/S41596-019-0152-8  0.594
2019 Wilbertz JH, Voigt F, Horvathova I, Roth G, Zhan Y, Chao JA. Single-Molecule Imaging of mRNA Localization and Regulation during the Integrated Stress Response. Molecular Cell. PMID 30661979 DOI: 10.1016/J.Molcel.2018.12.006  0.491
2018 Chao JA, Lionnet T. Imaging the Life and Death of mRNAs in Single Cells. Cold Spring Harbor Perspectives in Biology. 10. PMID 30510061 DOI: 10.1101/Cshperspect.A032086  0.6
2018 Jia M, Gut H, Chao JA. Structural basis of IMP3 RRM12 recognition of RNA. Rna (New York, N.Y.). PMID 30135093 DOI: 10.2210/Pdb6Fqr/Pdb  0.6
2018 Voigt F, Eglinger J, Chao JA. Detection of the First Round of Translation: The TRICK Assay. Methods in Molecular Biology (Clifton, N.J.). 1649: 373-384. PMID 29130211 DOI: 10.1007/978-1-4939-7213-5_25  0.614
2017 Voigt F, Zhang H, Cui XA, Triebold D, Liu AX, Eglinger J, Lee ES, Chao JA, Palazzo AF. Single-Molecule Quantification of Translation-Dependent Association of mRNAs with the Endoplasmic Reticulum. Cell Reports. 21: 3740-3753. PMID 29281824 DOI: 10.1016/J.Celrep.2017.12.008  0.515
2017 Horvathova I, Voigt F, Kotrys AV, Zhan Y, Artus-Revel CG, Eglinger J, Stadler MB, Giorgetti L, Chao JA. The Dynamics of mRNA Turnover Revealed by Single-Molecule Imaging in Single Cells. Molecular Cell. PMID 29056324 DOI: 10.1016/J.Molcel.2017.09.030  0.619
2016 Halstead JM, Wilbertz JH, Wippich F, Lionnet T, Ephrussi A, Chao JA. TRICK: A Single-Molecule Method for Imaging the First Round of Translation in Living Cells and Animals. Methods in Enzymology. 572: 123-57. PMID 27241753 DOI: 10.1016/Bs.Mie.2016.02.027  0.611
2015 Halstead JM, Lionnet T, Wilbertz JH, Wippich F, Ephrussi A, Singer RH, Chao JA. Translation. An RNA biosensor for imaging the first round of translation from single cells to living animals. Science (New York, N.Y.). 347: 1367-671. PMID 25792328 DOI: 10.1126/Science.Aaa3380  0.579
2015 Campbell PD, Chao JA, Singer RH, Marlow FL. Dynamic visualization of transcription and RNA subcellular localization in zebrafish. Development (Cambridge, England). 142: 1368-74. PMID 25758462 DOI: 10.1242/Dev.118968  0.584
2013 Hocine S, Raymond P, Zenklusen D, Chao JA, Singer RH. Single-molecule analysis of gene expression using two-color RNA labeling in live yeast. Nature Methods. 10: 119-21. PMID 23263691 DOI: 10.1038/Nmeth.2305  0.59
2012 Chao JA, Yoon YJ, Singer RH. Imaging translation in single cells using fluorescent microscopy. Cold Spring Harbor Perspectives in Biology. 4. PMID 22960595 DOI: 10.1101/Cshperspect.A012310  0.458
2012 Park HY, Trcek T, Wells AL, Chao JA, Singer RH. An unbiased analysis method to quantify mRNA localization reveals its correlation with cell motility. Cell Reports. 1: 179-84. PMID 22832165 DOI: 10.1016/J.Celrep.2011.12.009  0.448
2012 Wu B, Chao JA, Singer RH. Fluorescence fluctuation spectroscopy enables quantitative imaging of single mRNAs in living cells. Biophysical Journal. 102: 2936-44. PMID 22735544 DOI: 10.1016/J.Bpj.2012.05.017  0.577
2012 Trcek T, Chao JA, Larson DR, Park HY, Zenklusen D, Shenoy SM, Singer RH. Single-mRNA counting using fluorescent in situ hybridization in budding yeast. Nature Protocols. 7: 408-19. PMID 22301778 DOI: 10.1038/Nprot.2011.451  0.456
2012 Patel VL, Mitra S, Harris R, Buxbaum AR, Lionnet T, Brenowitz M, Girvin M, Levy M, Almo SC, Singer RH, Chao JA. Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control. Genes & Development. 26: 43-53. PMID 22215810 DOI: 10.1101/Gad.177428.111  0.571
2012 Patel V, Chao J, Singer R, Guha C. IMP1 Consensus Recognition Elements Identify Transcripts Affecting Tumor Cell Survival After Ionizing Radiation International Journal of Radiation Oncology*Biology*Physics. 84: S672-S673. DOI: 10.1016/J.Ijrobp.2012.07.1797  0.509
2011 Larson DR, Zenklusen D, Wu B, Chao JA, Singer RH. Real-time observation of transcription initiation and elongation on an endogenous yeast gene. Science (New York, N.Y.). 332: 475-8. PMID 21512033 DOI: 10.1126/Science.1202142  0.513
2011 Lionnet T, Czaplinski K, Darzacq X, Shav-Tal Y, Wells AL, Chao JA, Park HY, de Turris V, Lopez-Jones M, Singer RH. A transgenic mouse for in vivo detection of endogenous labeled mRNA. Nature Methods. 8: 165-70. PMID 21240280 DOI: 10.1038/Nmeth.1551  0.465
2010 Chao JA, Patskovsky Y, Patel V, Levy M, Almo SC, Singer RH. ZBP1 recognition of beta-actin zipcode induces RNA looping. Genes & Development. 24: 148-58. PMID 20080952 DOI: 10.1101/Gad.1862910  0.608
2009 Singer RH, Shav-Tal Y, Darzacq X, de Turris V, Chao J, Gruenwald D, Lionnet T, Shenoy S. Using fluorescent proteins to analyze gene expression in real-time Biophysical Journal. 96: 205a. DOI: 10.1016/J.Bpj.2008.12.1832  0.611
2008 Chao JA, Patskovsky Y, Almo SC, Singer RH. Structural basis for the coevolution of a viral RNA-protein complex. Nature Structural & Molecular Biology. 15: 103-5. PMID 18066080 DOI: 10.1038/Nsmb1327  0.558
2008 Chao JA, Czaplinski K, Singer RH. Using the Bacteriophage MS2 Coat Protein-RNA Binding Interaction to Visualize RNA in Living Cells Probes and Tags to Study Biomolecular Function: For Proteins, Rna, and Membranes. 163-174. DOI: 10.1002/9783527623099.ch9  0.456
2005 Chao JA, Lee JH, Chapados BR, Debler EW, Schneemann A, Williamson JR. Dual modes of RNA-silencing suppression by Flock House virus protein B2. Nature Structural & Molecular Biology. 12: 952-7. PMID 16228003 DOI: 10.1038/Nsmb1005  0.627
2004 Chao JA, Williamson JR. Joint X-ray and NMR refinement of the yeast L30e-mRNA complex. Structure (London, England : 1993). 12: 1165-76. PMID 15242593 DOI: 10.1016/J.Str.2004.04.023  0.646
2003 Hoggan DB, Chao JA, Prasad GS, Stout CD, Williamson JR. Combinatorial crystallization of an RNA-protein complex. Acta Crystallographica. Section D, Biological Crystallography. 59: 466-73. PMID 12595703 DOI: 10.1107/S0907444902023399  0.625
2003 Chao JA, Prasad GS, White SA, Stout CD, Williamson JR. Inherent protein structural flexibility at the RNA-binding interface of L30e. Journal of Molecular Biology. 326: 999-1004. PMID 12589748 DOI: 10.1016/S0022-2836(02)01476-6  0.642
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