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Wei Zhuang, Ph.D. - Publications

Affiliations: 
2007 University of California, Irvine, Irvine, CA 
Area:
dynamics and relaxation processes of large molecules, biological complexes and semiconductors
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53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhang X, Wang Z, Chen ZN, Li H, Zhang L, Ye JT, Zhang Q, Zhuang W. Molecular Mechanism of Water Reorientation Dynamics in Dimethyl Sulfoxide Aqueous Mixtures. The Journal of Physical Chemistry. B. PMID 32022564 DOI: 10.1021/Acs.Jpcb.0C00717  0.341
2019 Long F, Chen Z, Han K, Zhang L, Zhuang W. Differentiation between Enamines and Tautomerizable Imines Oxidation Reaction Mechanism using Electron-Vibration-Vibration Two Dimensional Infrared Spectroscopy. Molecules (Basel, Switzerland). 24. PMID 30823671 DOI: 10.3390/Molecules24050869  0.315
2018 Chen X, Song J, Chen ZN, Jin T, Long F, Xie H, Zheng Y, Zhuang W, Zhang L. Rational designing of 8-hydroxyquinolin-imidazolinone-based fluorescent protein mutants with dramatically red shifted emission: A computational study. Journal of Computational Chemistry. PMID 30318750 DOI: 10.1002/Jcc.25552  0.304
2018 Zhang Q, Wu T, Chen C, Mukamel S, Zhuang W. Reply to Stirnemann et al.: Frame retardation is the key reason behind the general slowdown of water reorientation dynamics in concentrated electrolytes. Proceedings of the National Academy of Sciences of the United States of America. PMID 29748428 DOI: 10.1073/Pnas.1805682115  0.367
2018 Zhang X, Zhang L, Jin T, Zhang Q, Zhuang W. Cosolvent effect on the dynamics of water in aqueous binary mixtures Molecular Physics. 116: 1014-1025. DOI: 10.1080/00268976.2018.1424958  0.312
2018 Zhang Q, Du Y, Chen C, Zhuang W. Rotational Mechanism of Ammonium Ion in Water and Methanol Chinese Journal of Chemical Physics. 31: 568-574. DOI: 10.1063/1674-0068/31/Cjcp1806144  0.35
2018 Zhang Q, Pan Z, Zhang L, Zhang R, Chen Z, Jin T, Wu T, Chen X, Zhuang W. Ion effect on the dynamics of water hydrogen bonding network: A theoretical and computational spectroscopy point of view Wiley Interdisciplinary Reviews: Computational Molecular Science. 8: e1373. DOI: 10.1002/Wcms.1373  0.3
2017 Zhang Q, Wu T, Chen C, Mukamel S, Zhuang W. Molecular mechanism of water reorientational slowing down in concentrated ionic solutions. Proceedings of the National Academy of Sciences of the United States of America. PMID 28874580 DOI: 10.1073/Pnas.1707453114  0.458
2017 Zhang Q, Chen H, Wu T, Jin T, Pan Z, Zheng J, Gao Y, Zhuang W. The opposite effects of sodium and potassium cations on water dynamics. Chemical Science. 8: 1429-1435. PMID 28451283 DOI: 10.1039/C6Sc03320B  0.338
2017 Chen X, Wu T, Chen Z, Jin T, Zhuang W, Zheng Y. Simulation of the T-jump triggered unfolding and thermal unfolding vibrational spectroscopy related to polypeptides conformation fluctuation Science China-Chemistry. 60: 1115-1129. DOI: 10.1007/S11426-016-9055-3  0.366
2016 Chen F, Zeng Q, Zhuang W, Liang W. Characterizing the Structures, Spectra and Energy Landscapes Involved in Excited-state Proton Transfer Process of Red Fluorescent Protein LSSmKate1. The Journal of Physical Chemistry. B. PMID 27581731 DOI: 10.1021/Acs.Jpcb.6B04708  0.349
2015 Fang B, Wang T, Chen X, Jin T, Zhang R, Zhuang W. Modeling Vibrational Spectra of Ester Carbonyl Stretch in Water and DMSO based on Molecular Dynamics Simulation. The Journal of Physical Chemistry. B. PMID 26335032 DOI: 10.1021/Acs.Jpcb.5B06541  0.396
2015 Pan Z, Wu T, Jin T, Liu Y, Nagata Y, Zhang R, Zhuang W. Low frequency 2D Raman-THz spectroscopy of ionic solution: A simulation study. The Journal of Chemical Physics. 142: 212419. PMID 26049439 DOI: 10.1063/1.4917260  0.606
2015 Wu T, Wang T, Chen X, Fang B, Zhang R, Zhuang W. Modeling the temperature-dependent peptide vibrational spectra based on implicit-solvent model and enhance sampling technique Chinese Physics B. 25. DOI: 10.1088/1674-1056/25/1/018201  0.401
2015 Zhang R, Pan Z, Zhuang W. Modeling the low frequency vibrational spectroscopy of ionic solutions International Journal of Quantum Chemistry. 115: 564-569. DOI: 10.1002/Qua.24826  0.363
2014 Jin T, Zhang B, Song J, Jiang L, Qiu Y, Zhuang W. Infrared signature of the early stage microsolvation in the NaSO₄⁻(H₂O)₁₋₅ clusters: a simulation study. The Journal of Physical Chemistry. A. 118: 9157-62. PMID 24878274 DOI: 10.1021/Jp5028299  0.361
2014 Wu T, Zhang R, Li H, Yang L, Zhuang W. Discriminating trpzip2 and trpzip4 peptides' folding landscape using the two-dimensional infrared spectroscopy: a simulation study. The Journal of Chemical Physics. 140: 055101. PMID 24511982 DOI: 10.1063/1.4863562  0.379
2014 Zhang R, Zhuang W. Cation effect in the ionic solution optical Kerr effect measurements: a simulation study. The Journal of Chemical Physics. 140: 054507. PMID 24511952 DOI: 10.1063/1.4863696  0.373
2014 Wang T, Zhang R, Wu T, Li H, Zhuang W. Simulating ion clustering in potassium thiocyanate aqueous solutions with various ion-water models Science China Chemistry. 57: 1723-1730. DOI: 10.1007/S11426-014-5244-2  0.309
2013 Zhang R, Zhuang W. Effect of ion pairing on the solution dynamics investigated by the simulations of the optical Kerr effect and the dielectric relaxation spectra. The Journal of Physical Chemistry. B. 117: 15395-406. PMID 23875693 DOI: 10.1021/Jp404923Y  0.362
2013 Bian H, Chen H, Zhang Q, Li J, Wen X, Zhuang W, Zheng J. Cation effects on rotational dynamics of anions and water molecules in alkali (Li+, Na+, K+, Cs+) thiocyanate (SCN-) aqueous solutions. The Journal of Physical Chemistry. B. 117: 7972-84. PMID 23763605 DOI: 10.1021/Jp4016646  0.335
2013 Wu T, Yang L, Zhang R, Shao Q, Zhuang W. Modeling the thermal unfolding 2DIR spectra of a β-hairpin peptide based on the implicit solvent MD simulation. The Journal of Physical Chemistry. A. 117: 6256-63. PMID 23496267 DOI: 10.1021/Jp400625A  0.372
2013 Zhang Q, Xie W, Bian H, Gao YQ, Zheng J, Zhuang W. Microscopic origin of the deviation from Stokes-Einstein behavior observed in dynamics of the KSCN aqueous solutions: a MD simulation study. The Journal of Physical Chemistry. B. 117: 2992-3004. PMID 23414456 DOI: 10.1021/Jp400441E  0.322
2012 Bian H, Li J, Zhang Q, Chen H, Zhuang W, Gao YQ, Zheng J. Ion segregation in aqueous solutions. The Journal of Physical Chemistry. B. 116: 14426-32. PMID 23181902 DOI: 10.1021/Jp310153N  0.324
2012 Song J, Gao F, Cui RZ, Shuang F, Liang W, Huang X, Zhuang W. Investigating the structural origin of trpzip2 temperature dependent unfolding fluorescence line shape based on a Markov state model simulation. The Journal of Physical Chemistry. B. 116: 12669-76. PMID 22994891 DOI: 10.1021/Jp304714Q  0.34
2012 Falvo C, Zhuang W, Kim YS, Axelsen PH, Hochstrasser RM, Mukamel S. Frequency distribution of the amide-I vibration sorted by residues in amyloid fibrils revealed by 2D-IR measurements and simulations. The Journal of Physical Chemistry. B. 116: 3322-30. PMID 22338639 DOI: 10.1021/Jp2096423  0.421
2012 Z. Cui R, Silva D, Song J, R. Bowman G, Zhuang W, Huang X. Bridging the Gap Between Optical Spectroscopic Experiments and Computer Simulations for Fast Protein Folding Dynamics Current Physical Chemistry. 2: 45-58. DOI: 10.2174/1877946811202010045  0.376
2011 Bian H, Li J, Wen X, Sun Z, Song J, Zhuang W, Zheng J. Mapping molecular conformations with multiple-mode two-dimensional infrared spectroscopy. The Journal of Physical Chemistry. A. 115: 3357-65. PMID 21438508 DOI: 10.1021/Jp200516P  0.371
2011 Zhuang W, Cui RZ, Silva DA, Huang X. Simulating the T-jump-triggered unfolding dynamics of trpzip2 peptide and its time-resolved IR and two-dimensional IR signals using the Markov state model approach. The Journal of Physical Chemistry. B. 115: 5415-24. PMID 21388153 DOI: 10.1021/Jp109592B  0.388
2010 Zhuang W, Sgourakis NG, Li Z, Garcia AE, Mukamel S. Discriminating early stage A{beta}42 monomer structures using chirality-induced 2DIR spectroscopy in a simulation study. Proceedings of the National Academy of Sciences of the United States of America. 107: 15687-92. PMID 20798063 DOI: 10.1073/Pnas.1002131107  0.517
2009 Sengupta N, Maekawa H, Zhuang W, Toniolo C, Mukamel S, Tobias DJ, Ge NH. Sensitivity of 2D IR spectra to peptide helicity: a concerted experimental and simulation study of an octapeptide. The Journal of Physical Chemistry. B. 113: 12037-49. PMID 19496555 DOI: 10.1021/Jp901504R  0.54
2009 Zhuang W, Hayashi T, Mukamel S. Coherent multidimensional vibrational spectroscopy of biomolecules: concepts, simulations, and challenges. Angewandte Chemie (International Ed. in English). 48: 3750-81. PMID 19415637 DOI: 10.1002/Anie.200802644  0.572
2009 Mukamel S, Abramavicius D, Yang L, Zhuang W, Schweigert IV, Voronine DV. Coherent multidimensional optical probes for electron correlations and exciton dynamics: from NMR to X-rays. Accounts of Chemical Research. 42: 553-62. PMID 19323494 DOI: 10.1021/Ar800258Z  0.745
2009 Zhuang W, Hayashi T, Mukamel S. Kohärente mehrdimensionale Schwingungsspektroskopie von Biomolekülen: Konzepte, Simulationen und Herausforderungen Angewandte Chemie. 121: 3804-3838. DOI: 10.1002/Ange.200802644  0.346
2008 Falvo C, Hayashi T, Zhuang W, Mukamel S. Coherent two dimensional infrared spectroscopy of a cyclic decapeptide antamanide. A simulation study of the amide-I and A bands. The Journal of Physical Chemistry. B. 112: 12479-90. PMID 18781709 DOI: 10.1021/Jp801493Y  0.544
2008 Li Z, Yu H, Zhuang W, Mukamel S. Geometry and Excitation Energy Fluctuations of NMA in Aqueous Solution with CHARMM, AMBER, OPLS, and GROMOS Force Fields: Implications for Protein Ultraviolet Spectra Simulation. Chemical Physics Letters. 452: 78-83. PMID 18438457 DOI: 10.1016/J.Cplett.2007.12.022  0.458
2008 Lorenz VO, Mukamel S, Zhuang W, Cundiff ST. Ultrafast optical spectroscopy of spectral fluctuations in a dense atomic vapor. Physical Review Letters. 100: 013603. PMID 18232760 DOI: 10.1103/Physrevlett.100.013603  0.497
2008 Wang J, Zhuang W, Mukamel S, Hochstrasser R. Two-dimensional infrared spectroscopy as a probe of the solvent electrostatic field for a twelve residue peptide. The Journal of Physical Chemistry. B. 112: 5930-7. PMID 18078331 DOI: 10.1021/Jp075683K  0.5
2007 Li Z, Abramavicius D, Zhuang W, Mukamel S. Two Dimensional Electronic Correlation Spectroscopy of the npi* and pipi* Protein Backbone Transitions: A Simulation Study. Chemical Physics. 341: 29-36. PMID 19011677 DOI: 10.1016/J.Chemphys.2007.03.029  0.671
2007 Volkov VV, Chelli R, Zhuang W, Nuti F, Takaoka Y, Papini AM, Mukamel S, Righini R. Electrostatic interactions in phospholipid membranes revealed by coherent 2D IR spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 104: 15323-7. PMID 17881567 DOI: 10.1073/Pnas.0706426104  0.433
2007 Zhuang W, Abramavicius D, Voronine DV, Mukamel S. Simulation of two-dimensional infrared spectroscopy of amyloid fibrils. Proceedings of the National Academy of Sciences of the United States of America. 104: 14233-6. PMID 17675411 DOI: 10.1073/Pnas.0700392104  0.673
2007 Mukamel S, Zhuang W, Abramavicius D, Hayashi T, Voronine D. Coherent Nonlinear Optical Spectroscopy of Proteins: Femtosecond Analogues of Multidimensional NMR Frontiers in Optics. DOI: 10.1364/Fio.2007.Ftha1  0.756
2006 Zhuang W, Abramavicius D, Mukamel S. Two-dimensional vibrational optical probes for peptide fast folding investigation. Proceedings of the National Academy of Sciences of the United States of America. 103: 18934-8. PMID 17146054 DOI: 10.1073/Pnas.0606912103  0.679
2006 Zhuang W, Abramavicius D, Hayashi T, Mukamel S. Simulation protocols for coherent femtosecond vibrational spectra of peptides. The Journal of Physical Chemistry. B. 110: 3362-74. PMID 16494351 DOI: 10.1021/Jp055813U  0.671
2006 Abramavicius D, Zhuang W, Mukamel S. Probing molecular chirality via excitonic nonlinear response Journal of Physics B: Atomic, Molecular and Optical Physics. 39: 5051-5066. DOI: 10.1088/0953-4075/39/24/003  0.656
2005 Hayashi T, la Cour Jansen T, Zhuang W, Mukamel S. Collective solvent coordinates for the infrared spectrum of HOD in D2O based on an ab initio electrostatic map. The Journal of Physical Chemistry. A. 109: 64-82. PMID 16839090 DOI: 10.1021/Jp046685X  0.496
2005 Hayashi T, Zhuang W, Mukamel S. Electrostatic DFT map for the complete vibrational amide band of NMA. The Journal of Physical Chemistry. A. 109: 9747-59. PMID 16833288 DOI: 10.1021/Jp052324L  0.49
2005 Jansen Tl, Hayashi T, Zhuang W, Mukamel S. Stochastic Liouville equations for hydrogen-bonding fluctuations and their signatures in two-dimensional vibrational spectroscopy of water. The Journal of Chemical Physics. 123: 114504. PMID 16392570 DOI: 10.1063/1.2008251  0.634
2005 Mukamel S, Zhuang W. Coherent femtosecond multidimensional probes of molecular vibrations. Proceedings of the National Academy of Sciences of the United States of America. 102: 13717-8. PMID 16172375 DOI: 10.1073/Pnas.0506874102  0.49
2005 Zhuang W, Abramavicius D, Mukamel S. Dissecting coherent vibrational spectra of small proteins into secondary structural elements by sensitivity analysis. Proceedings of the National Academy of Sciences of the United States of America. 102: 7443-8. PMID 15894625 DOI: 10.1073/Pnas.0408781102  0.669
2004 Jansen Tl, Zhuang W, Mukamel S. Stochastic Liouville equation simulation of multidimensional vibrational line shapes of trialanine. The Journal of Chemical Physics. 121: 10577-98. PMID 15549941 DOI: 10.1063/1.1807824  0.639
2004 Abramavicius D, Zhuang W, Mukamel S. Peptide Secondary Structure Determination by Three-Pulse Coherent Vibrational Spectroscopies:  A Simulation Study The Journal of Physical Chemistry B. 108: 18034-18045. DOI: 10.1021/Jp047711U  0.652
2004 Zhuang W, Dellago C. Dissociation of hydrogen chloride and proton transfer in liquid glycerol: An ab initio molecular dynamics study Journal of Physical Chemistry B. 108: 19647-19656. DOI: 10.1021/Jp047676R  0.325
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